RLG00000018498

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017936
Physical Location & Seq
Forward (+)
30825327 .. 30825692
366 bp
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UTR
Exon/CDS
Intron
RLM00000018498

Sequence Viewer

Length: 366 bp
ATGGCGGCAGAAGCACCGTCTTCTTCTTCATCACGTAGCAATGTTTATCATCAAGGCTCCGACGACAAGGCCTTGACAGAGTCGGACTTGGCCGCCGCACAGCAGCTGATGCAACTCAGCGACGAGGATAACAACAACAGCAGCAGCAGTTGCGGCAGCAAGAAGAAGAGAAGAAGTTACAAAGGGGAAGAGTACGAGACAGATGAAGAAGGGGTCGAATATCAGAGCCCCCTGAGTGTGATCACCTGCGCAAAGATTGAAGAGATTTTTGGGAAGGAAGACGAACAAGATTACCAGCCAAAGAAGAAGACAAGGTTCCGGTCGCTTGCTGATATTTATCTGACGACCAGACCAATCAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.58

Weight (kDa)

4.96

Isoelectric Point (pI)

77.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09876
fragaria_vesca FvH4_1g23900
prunus_persica Prupe.6G161200_v2.0.a1
pyrus_communis pycom01g03560
rosa_laevigata RLG00000018498
rosa_roxburghii Rroxscaffold_2G00124000
rosa_rugosa Rorug02G0224600
rosa_samantha Rh2AG282200 Rh2BG293500 Rh2DG288400 Rh2DG307500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
Acc16I TGCGCA 1 cut(s) 250
Acc36I ACCTGC 1 cut(s) 254
AciI CCGC 4 cut(s) 5, 93, 96, 153
AcoI YGGCCR 1 cut(s) 90
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 1 cut(s) 260
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 2 cut(s) 69, 90
ApeKI GCWGC 4 cut(s) 103, 141, 144, 156
AspLEI GCGC 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 235
BanII GRGCYC 1 cut(s) 230
BbsI GAAGAC 3 cut(s) 12, 285, 314
BbvI GCAGC 4 cut(s) 115, 153, 156, 168
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 254
BisI GCNGC 8 cut(s) 6, 93, 96, 104, 142, 145, 154, 157
BlsI GCNGC 8 cut(s) 7, 94, 97, 105, 143, 146, 155, 158
BmiI GGNNCC 2 cut(s) 58, 317
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 3 cut(s) 12, 285, 314
BsaAI YACGTR 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 336
BsaWI WCCGGW 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 336
BseJI GATNNNNATC 1 cut(s) 336
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 130, 224
BseXI GCAGC 4 cut(s) 115, 153, 156, 168
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 71, 92
BsiEI CGRYCG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 2 cut(s) 71, 92
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 4 cut(s) 5, 93, 96, 153
BspANI GGCC 2 cut(s) 71, 92
BspCNI CTCAG 2 cut(s) 129, 225
BspLI GGNNCC 2 cut(s) 58, 317
BspMI ACCTGC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 46
BssMI GATC 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 3 cut(s) 161, 183, 255
BstAPI GCANNNNNTGC 2 cut(s) 109, 150
BstBAI YACGTR 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 116, 233
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 240
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 4 cut(s) 11, 109, 150, 153
BstV1I GCAGC 4 cut(s) 115, 153, 156, 168
BstV2I GAAGAC 3 cut(s) 12, 285, 314
BsuRI GGCC 2 cut(s) 71, 92
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 327
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 363
CviJI RGCY 6 cut(s) 57, 71, 92, 106, 228, 298
CviKI_1 RGCY 6 cut(s) 57, 71, 92, 106, 228, 298
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 116, 233
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 161, 183, 255
EarI CTCTTC 3 cut(s) 161, 183, 255
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 230
FaeI CATG 1 cut(s) 366
FaiI YATR 1 cut(s) 364
FatI CATG 1 cut(s) 362
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 8 cut(s) 6, 93, 96, 104, 142, 145, 154, 157
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 8 cut(s) 6, 93, 96, 104, 142, 145, 154, 157
FspI TGCGCA 1 cut(s) 250
GlaI GCGC 1 cut(s) 250
GluI GCNGC 8 cut(s) 6, 93, 96, 104, 142, 145, 154, 157
HaeIII GGCC 2 cut(s) 71, 92
HapII CCGG 1 cut(s) 319
HhaI GCGC 1 cut(s) 251
Hin1II CATG 1 cut(s) 366
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 319
HphI GGTGA 1 cut(s) 235
Hpy188I TCNGA 5 cut(s) 61, 85, 225, 342, 359
Hpy99I CGWCG 2 cut(s) 65, 125
HpyAV CCTTC 2 cut(s) 203, 268
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 109, 150, 153
HpyF3I CTNAG 2 cut(s) 116, 233
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 1 cut(s) 366
HspAI GCGC 1 cut(s) 249
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 245, 259, 308, 332, 361
Lsp1109I GCAGC 4 cut(s) 115, 153, 156, 168
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 176
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 230
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 63, 84
MnlI CCTC 1 cut(s) 118
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 1 cut(s) 319
MwoI GCNNNNNNNGC 4 cut(s) 11, 109, 150, 153
NdeII GATC 1 cut(s) 240
NlaIII CATG 1 cut(s) 366
NlaIV GGNNCC 2 cut(s) 58, 317
NsbI TGCGCA 1 cut(s) 250
PaqCI CACCTGC 1 cut(s) 254
PceI AGGCCT 1 cut(s) 71
PflFI GACNNNGTC 1 cut(s) 79
PkrI GCNGC 8 cut(s) 7, 94, 97, 105, 143, 146, 155, 158
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 58, 317
PstNI CAGNNNCTG 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SatI GCNGC 8 cut(s) 6, 93, 96, 104, 142, 145, 154, 157
Sau3AI GATC 1 cut(s) 240
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 1 cut(s) 230
SetI ASST 4 cut(s) 37, 108, 248, 317
SfaNI GCATC 1 cut(s) 99
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 4 cut(s) 5, 93, 96, 153
StuI AGGCCT 1 cut(s) 71
TaaI ACNGT 1 cut(s) 18
TaiI ACGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 216
TauI GCSGC 4 cut(s) 8, 95, 98, 156
TseI GCWGC 4 cut(s) 103, 141, 144, 156
TspDTI ATGAA 2 cut(s) 18, 219
Tth111I GACNNNGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.