Prupe.6G161200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017936
Physical Location & Seq
Reverse (-)
14971398 .. 14971691
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G161200.1

Sequence Viewer

Length: 294 bp
ATGACCGAGTCAGAGTTGGCCGCGGCGCAGCAGCTGATGCAGCTTAGCGACGAAGATAACAACAATAACAGCAGCAGCAGCAGCAACAAGAACACTAAGCACGAGGGTGAGGAGGTTGATCAGAGGCCGTTGATCAATGTGATCACATGGGCAAAGATTGAAGAGATTTTTGGGAAAGAAGAAGATGTTGATCGGCCCAAGAAGCGAAGATACCGGTCTCTTGCGAGTATTTATCTGACGAGCAAACCAGTGAATGCAGGATCAGCACATGGGAAGAAGGTGAGGACATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.97

Weight (kDa)

6.74

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09876
fragaria_vesca FvH4_1g23900
prunus_persica Prupe.6G161200_v2.0.a1
pyrus_communis pycom01g03560
rosa_laevigata RLG00000018498
rosa_roxburghii Rroxscaffold_2G00124000
rosa_rugosa Rorug02G0224600
rosa_samantha Rh2AG282200 Rh2BG293500 Rh2DG288400 Rh2DG307500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 21, 23
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 18
AgeI ACCGGT 1 cut(s) 213
AgsI TTSAA 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 2 cut(s) 34, 43
AluI AGCT 2 cut(s) 34, 43
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 3 cut(s) 18, 125, 194
ApeKI GCWGC 7 cut(s) 28, 31, 40, 72, 75, 78, 81
AsiGI ACCGGT 1 cut(s) 213
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 119, 292
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BauI CACGAG 1 cut(s) 101
BbvI GCAGC 7 cut(s) 40, 43, 52, 84, 87, 90, 93
BceAI ACGGC 1 cut(s) 112
BclI TGATCA 3 cut(s) 118, 132, 141
BcoDI GTCTC 1 cut(s) 222
BisI GCNGC 9 cut(s) 21, 24, 29, 32, 41, 73, 76, 79, 82
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 9 cut(s) 22, 25, 30, 33, 42, 74, 77, 80, 83
BmgT120I GGNCC 1 cut(s) 195
BmsI GCATC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 213
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 21
BseJI GATNNNNATC 1 cut(s) 189
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 7 cut(s) 40, 43, 52, 84, 87, 90, 93
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 3 cut(s) 20, 127, 196
BshTI ACCGGT 1 cut(s) 213
BsiSI CCGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 3 cut(s) 20, 127, 196
Bso31I GGTCTC 1 cut(s) 222
Bsp143I GATC 5 cut(s) 118, 132, 141, 190, 260
Bsp1720I GCTNAGC 1 cut(s) 44
BspACI CCGC 2 cut(s) 21, 23
BspANI GGCC 3 cut(s) 20, 127, 196
BspFNI CGCG 1 cut(s) 23
BspPI GGATC 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 213
BsrI ACTGG 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 5 cut(s) 118, 132, 141, 190, 260
BssSI CACGAG 1 cut(s) 101
Bst2BI CACGAG 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 44, 96
BstDSI CCRYGG 1 cut(s) 21
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 5 cut(s) 121, 135, 144, 193, 263
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 5 cut(s) 118, 132, 141, 190, 260
BstMWI GCNNNNNNNGC 6 cut(s) 37, 40, 78, 81, 202, 263
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 7 cut(s) 40, 43, 52, 84, 87, 90, 93
BsuRI GGCC 3 cut(s) 20, 127, 196
BtgI CCRYGG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 195
Cfr42I CCGCGG 1 cut(s) 24
CspAI ACCGGT 1 cut(s) 213
CviAII CATG 2 cut(s) 147, 269
CviJI RGCY 5 cut(s) 20, 34, 43, 127, 196
CviKI_1 RGCY 5 cut(s) 20, 34, 43, 127, 196
DdeI CTNAG 2 cut(s) 44, 96
DpnI GATC 5 cut(s) 120, 134, 143, 192, 262
DpnII GATC 5 cut(s) 118, 132, 141, 190, 260
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 222
FaeI CATG 2 cut(s) 150, 272
FaiI YATR 2 cut(s) 148, 270
FatI CATG 2 cut(s) 146, 268
FbaI TGATCA 3 cut(s) 118, 132, 141
Fnu4HI GCNGC 9 cut(s) 21, 24, 29, 32, 41, 73, 76, 79, 82
Fsp4HI GCNGC 9 cut(s) 21, 24, 29, 32, 41, 73, 76, 79, 82
GlaI GCGC 1 cut(s) 27
GluI GCNGC 9 cut(s) 21, 24, 29, 32, 41, 73, 76, 79, 82
HaeIII GGCC 3 cut(s) 20, 127, 196
HapII CCGG 1 cut(s) 214
HhaI GCGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 150, 272
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 214
HphI GGTGA 2 cut(s) 119, 292
Hpy188I TCNGA 3 cut(s) 13, 123, 237
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 2 cut(s) 40, 257
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 40, 78, 81, 202, 263
HpyF3I CTNAG 2 cut(s) 44, 96
Hsp92II CATG 2 cut(s) 150, 272
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 3 cut(s) 118, 132, 141
KspI CCGCGG 1 cut(s) 24
Kzo9I GATC 5 cut(s) 118, 132, 141, 190, 260
LpnPI CCDG 3 cut(s) 227, 243, 261
Lsp1109I GCAGC 7 cut(s) 40, 43, 52, 84, 87, 90, 93
LweI GCATC 1 cut(s) 27
MalI GATC 5 cut(s) 120, 134, 143, 192, 262
MboI GATC 5 cut(s) 118, 132, 141, 190, 260
MboII GAAGA 6 cut(s) 65, 173, 191, 194, 219, 286
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 5 cut(s) 97, 103, 106, 117, 276
MseI TTAA 1 cut(s) 292
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 2 cut(s) 23, 34
MspI CCGG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 259
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 6 cut(s) 37, 40, 78, 81, 202, 263
NdeII GATC 5 cut(s) 118, 132, 141, 190, 260
NlaIII CATG 2 cut(s) 150, 272
OliI CACNNNNGTG 1 cut(s) 105
PctI GAATGC 1 cut(s) 259
PflFI GACNNNGTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 213
PkrI GCNGC 9 cut(s) 22, 25, 30, 33, 42, 74, 77, 80, 83
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 105
SacII CCGCGG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 9 cut(s) 21, 24, 29, 32, 41, 73, 76, 79, 82
Sau3AI GATC 5 cut(s) 118, 132, 141, 190, 260
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 1 cut(s) 17
SetI ASST 4 cut(s) 36, 45, 117, 282
SfaNI GCATC 1 cut(s) 27
Sfr303I CCGCGG 1 cut(s) 24
SgrBI CCGCGG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 105
SsiI CCGC 2 cut(s) 21, 23
TaqII GACCGA 1 cut(s) 20
TauI GCSGC 2 cut(s) 23, 26
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TscAI CASTG 1 cut(s) 255
TseI GCWGC 7 cut(s) 28, 31, 40, 72, 75, 78, 81
TspRI CASTG 1 cut(s) 255
Tth111I GACNNNGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.