FvH4_1g23900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017936
Physical Location & Seq
Forward (+)
15753308 .. 15754202
895 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23900.t1

Sequence Viewer

Length: 369 bp
ATGGCGGCAGAAGCACCATCTAATTCTTCTTCATCACGTAGCAATGTTTATCATCAGGGCTCCGACGAGAAGGCCTTGACCGAGTCGGAGTTTAACGCCGCGCAGCAGCTGATGCAACTCAGCGACAACAGCAGCAGCAGTTGCGGCAGCAAGAAGAGAAGAAGTAGTTGTAAGGTGGAGGAGCACTACGAGACAGATGAAGAAGGGGTTGTCGAATATCAGAGCCCGCTGAGTGTGATCACTTGCGCAAAGATTGAAGAGATTTTTGGCAAGGAGGACGAACAAGATTTCCGGCCAATTAAGAAGAAGACTACAAGGTACCGGTCGCTTGCTGATATTTATTTGATGACCAAACCGATCAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

5.75

Isoelectric Point (pI)

83.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09876
fragaria_vesca FvH4_1g23900
prunus_persica Prupe.6G161200_v2.0.a1
pyrus_communis pycom01g03560
rosa_laevigata RLG00000018498
rosa_roxburghii Rroxscaffold_2G00124000
rosa_rugosa Rorug02G0224600
rosa_samantha Rh2AG282200 Rh2BG293500 Rh2DG288400 Rh2DG307500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 247
Acc65I GGTACC 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 318
AccII CGCG 1 cut(s) 101
AciI CCGC 4 cut(s) 5, 99, 144, 227
AcoI YGGCCR 1 cut(s) 293
AfaI GTAC 1 cut(s) 320
AgeI ACCGGT 1 cut(s) 321
AgsI TTSAA 1 cut(s) 257
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 2 cut(s) 72, 293
ApeKI GCWGC 5 cut(s) 103, 106, 132, 135, 147
AsiGI ACCGGT 1 cut(s) 321
Asp718I GGTACC 1 cut(s) 318
AspLEI GCGC 2 cut(s) 103, 248
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 2 cut(s) 62, 227
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 5 cut(s) 115, 118, 144, 147, 159
BccI CCATC 1 cut(s) 25
BclI TGATCA 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 185
BisI GCNGC 8 cut(s) 6, 99, 104, 107, 133, 136, 145, 148
BlsI GCNGC 8 cut(s) 7, 100, 105, 108, 134, 137, 146, 149
BmiI GGNNCC 2 cut(s) 61, 320
BmsI GCATC 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 314
BsaAI YACGTR 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 2 cut(s) 133, 221
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 5 cut(s) 115, 118, 144, 147, 159
Bsh1236I CGCG 1 cut(s) 101
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 2 cut(s) 74, 295
BshNI GGYRCC 1 cut(s) 318
BshTI ACCGGT 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 2 cut(s) 292, 322
BsmAI GTCTC 1 cut(s) 185
BsnI GGCC 2 cut(s) 74, 295
Bsp1286I GDGCHC 3 cut(s) 62, 186, 227
Bsp143I GATC 2 cut(s) 237, 357
BspACI CCGC 4 cut(s) 5, 99, 144, 227
BspANI GGCC 2 cut(s) 74, 295
BspCNI CTCAG 2 cut(s) 132, 222
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 61, 320
BspT107I GGYRCC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 321
BssMI GATC 2 cut(s) 237, 357
Bst6I CTCTTC 2 cut(s) 149, 252
BstAPI GCANNNNNTGC 2 cut(s) 112, 141
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 227, 330
BstDEI CTNAG 2 cut(s) 119, 230
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 2 cut(s) 103, 248
BstKTI GATC 2 cut(s) 240, 360
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 2 cut(s) 237, 357
BstMCI CGRYCG 1 cut(s) 326
BstMWI GCNNNNNNNGC 5 cut(s) 11, 112, 129, 141, 144
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 5 cut(s) 115, 118, 144, 147, 159
BstV2I GAAGAC 1 cut(s) 314
BsuRI GGCC 2 cut(s) 74, 295
Cac8I GCNNGC 2 cut(s) 227, 330
CaiI CAGNNNCTG 1 cut(s) 109
CfoI GCGC 2 cut(s) 103, 248
Cfr10I RCCGGY 1 cut(s) 321
Csp6I GTAC 1 cut(s) 319
CspAI ACCGGT 1 cut(s) 321
CviJI RGCY 5 cut(s) 60, 74, 109, 225, 295
CviKI_1 RGCY 5 cut(s) 60, 74, 109, 225, 295
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 2 cut(s) 119, 230
DpnI GATC 2 cut(s) 239, 359
DpnII GATC 2 cut(s) 237, 357
EaeI YGGCCR 1 cut(s) 293
Eam1104I CTCTTC 2 cut(s) 149, 252
EarI CTCTTC 2 cut(s) 149, 252
Eco147I AGGCCT 1 cut(s) 74
Eco24I GRGCYC 2 cut(s) 62, 227
EcoT38I GRGCYC 2 cut(s) 62, 227
FauI CCCGC 1 cut(s) 234
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 8 cut(s) 6, 99, 104, 107, 133, 136, 145, 148
FriOI GRGCYC 2 cut(s) 62, 227
Fsp4HI GCNGC 8 cut(s) 6, 99, 104, 107, 133, 136, 145, 148
FspI TGCGCA 1 cut(s) 247
GlaI GCGC 2 cut(s) 102, 247
GluI GCNGC 8 cut(s) 6, 99, 104, 107, 133, 136, 145, 148
HaeIII GGCC 2 cut(s) 74, 295
HapII CCGG 2 cut(s) 292, 322
HhaI GCGC 2 cut(s) 103, 248
Hin6I GCGC 2 cut(s) 101, 246
HinP1I GCGC 2 cut(s) 101, 246
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 292, 322
Hpy188I TCNGA 4 cut(s) 64, 88, 222, 362
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 64, 197
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 112, 129, 141, 144
HpyF3I CTNAG 2 cut(s) 119, 230
HpySE526I ACGT 1 cut(s) 37
HspAI GCGC 2 cut(s) 101, 246
KpnI GGTACC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 2 cut(s) 237, 357
LmnI GCTCC 2 cut(s) 65, 181
LpnPI CCDG 3 cut(s) 41, 305, 335
Lsp1109I GCAGC 5 cut(s) 115, 118, 144, 147, 159
LweI GCATC 1 cut(s) 102
MaeII ACGT 1 cut(s) 37
MalI GATC 2 cut(s) 239, 359
MboI GATC 2 cut(s) 237, 357
MboII GAAGA 8 cut(s) 18, 21, 166, 171, 212, 269, 316, 319
MhlI GDGCHC 3 cut(s) 62, 186, 227
MluCI AATT 2 cut(s) 22, 297
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 66, 87
MnlI CCTC 2 cut(s) 172, 268
MseI TTAA 2 cut(s) 93, 300
MspA1I CMGCKG 2 cut(s) 109, 229
MspI CCGG 2 cut(s) 292, 322
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 5 cut(s) 11, 112, 129, 141, 144
NdeII GATC 2 cut(s) 237, 357
NlaIV GGNNCC 2 cut(s) 61, 320
NsbI TGCGCA 1 cut(s) 247
PceI AGGCCT 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 82
PinAI ACCGGT 1 cut(s) 321
PkrI GCNGC 8 cut(s) 7, 100, 105, 108, 134, 137, 146, 149
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 61, 320
PstNI CAGNNNCTG 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 109
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 2 cut(s) 93, 300
SatI GCNGC 8 cut(s) 6, 99, 104, 107, 133, 136, 145, 148
Sau3AI GATC 2 cut(s) 237, 357
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 3 cut(s) 62, 186, 227
SetI ASST 4 cut(s) 40, 111, 177, 320
SfaNI GCATC 1 cut(s) 102
Sse9I AATT 2 cut(s) 22, 297
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 4 cut(s) 5, 99, 144, 227
StuI AGGCCT 1 cut(s) 74
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 213
TaqII GACCGA 1 cut(s) 95
TasI AATT 2 cut(s) 22, 297
TauI GCSGC 3 cut(s) 8, 101, 147
Tru1I TTAA 2 cut(s) 93, 300
Tru9I TTAA 2 cut(s) 93, 300
TseI GCWGC 5 cut(s) 103, 106, 132, 135, 147
TspDTI ATGAA 2 cut(s) 21, 213
Tth111I GACNNNGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.