Rh2AG282200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017936
Physical Location & Seq
Forward (+)
34266427 .. 34266792
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG282200.1

Sequence Viewer

Length: 366 bp
ATGGCGGCAGAAGCACCATCTTCTTCTTCATCACGTAGCAATGTTTATCATCAAGGCTCCGACGACAAGGCCTTGACAGAGTCGGACTTGGCCGCCGCACAGCAGCTGATGCAACTCAGCGACGAGGATAACAACAACAGCAGCAGCAGTTGCGGCAGCAAGAAGAGAAGAAGTTACAAAGGGGAAGAGTACGAGACAGATGAAGAAGGGGTCGAATATCAGAGCCCGCTGAGTGTGATCACCTGCGCAAAGATTGAAGAGATTTTTGGGAAGGAAGACGAACAAGATTACCAGCCAAAGAAGAAGACAAAGTCGTACCGGTCGCTTGCTGATATTTATCTGACGACCAAACCAATCAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.5

Weight (kDa)

4.84

Isoelectric Point (pI)

74.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09876
fragaria_vesca FvH4_1g23900
prunus_persica Prupe.6G161200_v2.0.a1
pyrus_communis pycom01g03560
rosa_laevigata RLG00000018498
rosa_roxburghii Rroxscaffold_2G00124000
rosa_rugosa Rorug02G0224600
rosa_samantha Rh2AG282200 Rh2BG293500 Rh2DG288400 Rh2DG307500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 251
Acc16I TGCGCA 1 cut(s) 247
Acc36I ACCTGC 1 cut(s) 251
AciI CCGC 5 cut(s) 5, 93, 96, 153, 227
AcoI YGGCCR 1 cut(s) 90
AfaI GTAC 2 cut(s) 191, 317
AgeI ACCGGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 257
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 188
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 2 cut(s) 69, 90
ApeKI GCWGC 4 cut(s) 103, 141, 144, 156
AsiGI ACCGGT 1 cut(s) 318
AspLEI GCGC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 232
BanII GRGCYC 1 cut(s) 227
BbsI GAAGAC 2 cut(s) 282, 311
BbvI GCAGC 4 cut(s) 115, 153, 156, 168
BccI CCATC 1 cut(s) 25
BclI TGATCA 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 251
BisI GCNGC 8 cut(s) 6, 93, 96, 104, 142, 145, 154, 157
BlsI GCNGC 8 cut(s) 7, 94, 97, 105, 143, 146, 155, 158
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 282, 311
BsaAI YACGTR 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 336
BsaWI WCCGGW 1 cut(s) 318
Bse118I RCCGGY 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 336
BseJI GATNNNNATC 1 cut(s) 336
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 130, 221
BseXI GCAGC 4 cut(s) 115, 153, 156, 168
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 71, 92
BshTI ACCGGT 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 2 cut(s) 71, 92
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 5 cut(s) 5, 93, 96, 153, 227
BspANI GGCC 2 cut(s) 71, 92
BspCNI CTCAG 2 cut(s) 129, 222
BspLI GGNNCC 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 318
BssMI GATC 1 cut(s) 237
Bst6I CTCTTC 3 cut(s) 158, 180, 252
BstAPI GCANNNNNTGC 2 cut(s) 109, 150
BstBAI YACGTR 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 227, 327
BstDEI CTNAG 2 cut(s) 116, 230
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 237
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 4 cut(s) 11, 109, 150, 153
BstV1I GCAGC 4 cut(s) 115, 153, 156, 168
BstV2I GAAGAC 2 cut(s) 282, 311
BsuRI GGCC 2 cut(s) 71, 92
BveI ACCTGC 1 cut(s) 251
Cac8I GCNNGC 2 cut(s) 227, 327
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 318
Csp6I GTAC 2 cut(s) 190, 316
CspAI ACCGGT 1 cut(s) 318
CviAII CATG 1 cut(s) 363
CviJI RGCY 6 cut(s) 57, 71, 92, 106, 225, 295
CviKI_1 RGCY 6 cut(s) 57, 71, 92, 106, 225, 295
CviQI GTAC 2 cut(s) 190, 316
DdeI CTNAG 2 cut(s) 116, 230
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 158, 180, 252
EarI CTCTTC 3 cut(s) 158, 180, 252
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 227
FaeI CATG 1 cut(s) 366
FaiI YATR 1 cut(s) 364
FatI CATG 1 cut(s) 362
FauI CCCGC 1 cut(s) 234
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 8 cut(s) 6, 93, 96, 104, 142, 145, 154, 157
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 8 cut(s) 6, 93, 96, 104, 142, 145, 154, 157
FspI TGCGCA 1 cut(s) 247
GlaI GCGC 1 cut(s) 247
GluI GCNGC 8 cut(s) 6, 93, 96, 104, 142, 145, 154, 157
HaeIII GGCC 2 cut(s) 71, 92
HapII CCGG 1 cut(s) 319
HhaI GCGC 1 cut(s) 248
Hin1II CATG 1 cut(s) 366
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 319
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 5 cut(s) 61, 85, 222, 342, 359
Hpy99I CGWCG 2 cut(s) 65, 125
HpyAV CCTTC 2 cut(s) 200, 265
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 109, 150, 153
HpyF3I CTNAG 2 cut(s) 116, 230
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 1 cut(s) 366
HspAI GCGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 3 cut(s) 256, 305, 332
Lsp1109I GCAGC 4 cut(s) 115, 153, 156, 168
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 227
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 63, 84
MnlI CCTC 1 cut(s) 118
MspA1I CMGCKG 2 cut(s) 106, 229
MspI CCGG 1 cut(s) 319
MwoI GCNNNNNNNGC 4 cut(s) 11, 109, 150, 153
NdeII GATC 1 cut(s) 237
NlaIII CATG 1 cut(s) 366
NlaIV GGNNCC 1 cut(s) 58
NsbI TGCGCA 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 251
PceI AGGCCT 1 cut(s) 71
PflFI GACNNNGTC 2 cut(s) 79, 310
PinAI ACCGGT 1 cut(s) 318
PkrI GCNGC 8 cut(s) 7, 94, 97, 105, 143, 146, 155, 158
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 106
PsyI GACNNNGTC 2 cut(s) 79, 310
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 2 cut(s) 191, 317
RsaNI GTAC 2 cut(s) 190, 316
SatI GCNGC 8 cut(s) 6, 93, 96, 104, 142, 145, 154, 157
Sau3AI GATC 1 cut(s) 237
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 1 cut(s) 227
SetI ASST 3 cut(s) 37, 108, 245
SfaNI GCATC 1 cut(s) 99
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 5 cut(s) 5, 93, 96, 153, 227
StuI AGGCCT 1 cut(s) 71
TaiI ACGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 213
TauI GCSGC 4 cut(s) 8, 95, 98, 156
TseI GCWGC 4 cut(s) 103, 141, 144, 156
TspDTI ATGAA 2 cut(s) 18, 216
Tth111I GACNNNGTC 2 cut(s) 79, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.