AT5G10040

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
3143723 .. 3144157
435 bp
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UTR
Exon/CDS
Intron
AT5G10040.1

Sequence Viewer

Length: 264 bp
ATGGATTCATCGGCGGACATAGCAATATTAGTGGCAGATGAATGTAACCAAAAGGTGAATACAACGGCAGAGAAAGCATCGAATACAGCGGAGGTTGGGTGGTTGATGATGTTTGGGATTGAGGAGAAGAAGATTGAAAGTCTGATGAGGAAATTTGAAGCTAAATCTCAGTTTGCTGTGGCGGTTTCTAGTGGCTTTTTTCTGCTTAACTATGTTTCATCCTTGTACTATAAGTCACGTTTGAACCTCATGCTGGAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.77

Weight (kDa)

5.02

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10040 AT5G65207
prunus_persica Prupe.6G177500_v2.0.a1
pyrus_communis pycom08g16770
rosa_laevigata RLG00000018202
rosa_multiflora Rmu_ssc0000197.1_g000063
rosa_roxburghii Rroxscaffold_2G00127950 Rroxscaffold_2G00128810
rosa_samantha Rh2AG256600 Rh2BG267200 Rh2CG262200 Rh2DG265000
rosa_wichuraiana Rw2G020070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 14, 89, 182
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 3 cut(s) 137, 158, 244
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
ApoI RAATTY 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 67
BceAI ACGGC 1 cut(s) 81
BfaI CTAG 2 cut(s) 189, 262
BmsI GCATC 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 253
BspACI CCGC 3 cut(s) 14, 89, 182
BspCNI CTCAG 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 218
BstMWI GCNNNNNNNGC 2 cut(s) 20, 74
BtsCI GGATG 1 cut(s) 218
Csp6I GTAC 1 cut(s) 226
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviAII CATG 1 cut(s) 250
CviJI RGCY 2 cut(s) 161, 195
CviKI_1 RGCY 2 cut(s) 161, 195
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 168
EciI GGCGGA 1 cut(s) 29
FaeI CATG 1 cut(s) 253
FaiI YATR 4 cut(s) 20, 213, 231, 251
FatI CATG 1 cut(s) 249
FokI GGATG 1 cut(s) 205
FspBI CTAG 2 cut(s) 189, 262
Hin1II CATG 1 cut(s) 253
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 74
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 1 cut(s) 253
LpnPI CCDG 1 cut(s) 239
LweI GCATC 1 cut(s) 86
MaeI CTAG 2 cut(s) 189, 262
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 2 cut(s) 44, 234
MboII GAAGA 2 cut(s) 139, 142
MluCI AATT 1 cut(s) 152
MnlI CCTC 4 cut(s) 85, 115, 141, 257
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 20, 74
NlaIII CATG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 5
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 207
SetI ASST 5 cut(s) 57, 96, 163, 241, 249
SfaNI GCATC 1 cut(s) 86
SgeI CNNG 3 cut(s) 201, 235, 249
Sse9I AATT 1 cut(s) 152
SsiI CCGC 3 cut(s) 14, 89, 182
SspI AATATT 1 cut(s) 27
SspMI CTAG 2 cut(s) 189, 262
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 80
TasI AATT 1 cut(s) 152
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseFI GTSAC 1 cut(s) 234
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 2 cut(s) 54, 207
XapI RAATTY 1 cut(s) 152
XspI CTAG 2 cut(s) 189, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.