RLG00000018202

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017124
Physical Location & Seq
Reverse (-)
26810449 .. 26813046
2598 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018202

Sequence Viewer

Length: 513 bp
ATGCCCTGGCATGTTATCAACCTTGAAGAAATAGTCCCAAGCCGCACACTTGGACTCCAGCATCGGCTGTGCACTGCCTTCATATCAGACGTCCGCAGTGATGAGGACCCCGTCGCCGCCGCGCCCATTTCCTTTCTCGATCTCCGACGAAACCCGTTTTCTTCCTCATGGTCCTCTTCTTCCTCATCCTTGTCCTCTTTAGCAATGGCCACACCACACTCTTTTTCCTTCCCTTCTCTTTATCCTGCCCCCCTTCACGCGCTTCACCCGCTCAAATATATTAGCATGGCTGATATTGCGATTTTGGTTGCTGAAGAGTATGAGAGAAGGGTGAAGAGCTCAAGAAAAGCTGGTGAGGCTAGTACTGACTTGGCTTCTTGTGTTTCAGTTTTGGCTCAAACCCTGAAGGAGAAGATTGGAAAAGAAAAGATGGAGTTTCTTGTGAAGTGGGTTAAGGAGGAGCCCAGGAGCCAGATTGGTGTTGAAGCCTCCAATGGATTCTTCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.77

Weight (kDa)

6.52

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10040 AT5G65207
prunus_persica Prupe.6G177500_v2.0.a1
pyrus_communis pycom08g16770
rosa_laevigata RLG00000018202
rosa_multiflora Rmu_ssc0000197.1_g000063
rosa_roxburghii Rroxscaffold_2G00127950 Rroxscaffold_2G00128810
rosa_samantha Rh2AG256600 Rh2BG267200 Rh2CG262200 Rh2DG265000
rosa_wichuraiana Rw2G020070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccBSI CCGCTC 1 cut(s) 271
AccII CGCG 2 cut(s) 122, 260
AciI CCGC 5 cut(s) 43, 94, 117, 120, 269
AcoI YGGCCR 1 cut(s) 207
AcuI CTGAAG 2 cut(s) 333, 425
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 364
AgsI TTSAA 2 cut(s) 26, 485
AjnI CCWGG 2 cut(s) 5, 464
AjuI GAANNNNNNNTTGG 1 cut(s) 485
AluBI AGCT 2 cut(s) 339, 350
AluI AGCT 2 cut(s) 339, 350
Alw21I GWGCWC 2 cut(s) 74, 341
Alw44I GTGCAC 1 cut(s) 70
AoxI GGCC 1 cut(s) 207
ApaLI GTGCAC 1 cut(s) 70
AspLEI GCGC 2 cut(s) 124, 262
AspS9I GGNCC 2 cut(s) 106, 171
AsuHPI GGTGA 3 cut(s) 257, 343, 365
AvaII GGWCC 2 cut(s) 106, 171
BaeGI GKGCMC 1 cut(s) 74
BalI TGGCCA 1 cut(s) 209
BanII GRGCYC 2 cut(s) 341, 465
Bbv12I GWGCWC 2 cut(s) 74, 341
BccI CCATC 1 cut(s) 424
BciT130I CCWGG 2 cut(s) 7, 466
BfaI CTAG 1 cut(s) 360
BisI GCNGC 3 cut(s) 43, 117, 120
BlsI GCNGC 3 cut(s) 44, 118, 121
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 2 cut(s) 7, 466
Bme18I GGWCC 2 cut(s) 106, 171
BmgT120I GGNCC 2 cut(s) 106, 171
BmiI GGNNCC 3 cut(s) 108, 462, 470
BmrFI CCNGG 2 cut(s) 7, 466
BmsI GCATC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 325
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 5, 464
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 2 cut(s) 7, 466
BseDI CCNNGG 2 cut(s) 5, 464
BseGI GGATG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 473
BseSI GKGCMC 1 cut(s) 74
Bsh1236I CGCG 2 cut(s) 122, 260
BshFI GGCC 1 cut(s) 209
BsiHKAI GWGCWC 2 cut(s) 74, 341
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 3 cut(s) 74, 341, 465
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 5 cut(s) 43, 94, 117, 120, 269
BspANI GGCC 1 cut(s) 209
BspFNI CGCG 2 cut(s) 122, 260
BspLI GGNNCC 3 cut(s) 108, 462, 470
BspQI GCTCTTC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 5, 464
BssMI GATC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 7, 466
Bst6I CTCTTC 3 cut(s) 181, 309, 329
BstACI GRCGYC 1 cut(s) 90
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 2 cut(s) 122, 260
BstHHI GCGC 2 cut(s) 124, 262
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 3 cut(s) 268, 296, 356
BstNI CCWGG 2 cut(s) 7, 466
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 5, 464
BstSLI GKGCMC 1 cut(s) 74
BstUI CGCG 2 cut(s) 122, 260
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 2 cut(s) 72, 103
BtsIMutI CAGTG 2 cut(s) 72, 103
CfoI GCGC 2 cut(s) 124, 262
Cfr13I GGNCC 2 cut(s) 106, 171
Csp6I GTAC 1 cut(s) 363
CviAII CATG 3 cut(s) 11, 168, 286
CviQI GTAC 1 cut(s) 363
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 3 cut(s) 181, 309, 329
EarI CTCTTC 3 cut(s) 181, 309, 329
Ecl136II GAGCTC 1 cut(s) 339
Eco24I GRGCYC 2 cut(s) 341, 465
Eco47I GGWCC 2 cut(s) 106, 171
Eco53kI GAGCTC 1 cut(s) 339
Eco57I CTGAAG 2 cut(s) 333, 425
EcoICRI GAGCTC 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 5, 464
EcoT38I GRGCYC 2 cut(s) 341, 465
FaeI CATG 3 cut(s) 14, 171, 289
FaiI YATR 6 cut(s) 12, 83, 169, 279, 287, 321
FaqI GGGAC 1 cut(s) 20
FatI CATG 3 cut(s) 10, 167, 285
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 43, 117, 120
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 2 cut(s) 341, 465
Fsp4HI GCNGC 3 cut(s) 43, 117, 120
FspBI CTAG 1 cut(s) 360
GlaI GCGC 2 cut(s) 123, 261
GluI GCNGC 3 cut(s) 43, 117, 120
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 209
HhaI GCGC 2 cut(s) 124, 262
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 3 cut(s) 14, 171, 289
Hin6I GCGC 2 cut(s) 122, 260
HinP1I GCGC 2 cut(s) 122, 260
HinfI GANTC 2 cut(s) 54, 498
HphI GGTGA 3 cut(s) 257, 343, 365
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 88, 146
Hpy188III TCNNGA 2 cut(s) 137, 342
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 2 cut(s) 116, 150
HpyAV CCTTC 6 cut(s) 88, 238, 243, 263, 321, 400
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 296, 356
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 3 cut(s) 14, 171, 289
HspAI GCGC 2 cut(s) 122, 260
Kzo9I GATC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 2 cut(s) 460, 468
LpnPI CCDG 8 cut(s) 19, 71, 258, 336, 416, 451, 478, 485
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 90
MalI GATC 1 cut(s) 141
MbiI CCGCTC 1 cut(s) 271
MboI GATC 1 cut(s) 139
MboII GAAGA 8 cut(s) 38, 153, 168, 171, 326, 346, 424, 493
MhlI GDGCHC 3 cut(s) 74, 341, 465
MlsI TGGCCA 1 cut(s) 209
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 8 cut(s) 97, 175, 184, 193, 205, 349, 451, 499
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
MseI TTAA 2 cut(s) 453, 511
Msp20I TGGCCA 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 7, 466
MvaI CCWGG 2 cut(s) 7, 466
MvnI CGCG 2 cut(s) 122, 260
MwoI GCNNNNNNNGC 3 cut(s) 268, 296, 356
NdeII GATC 1 cut(s) 139
NlaIII CATG 3 cut(s) 14, 171, 289
NlaIV GGNNCC 3 cut(s) 108, 462, 470
NspI RCATGY 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 498
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 44, 118, 121
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
PpuMI RGGWCCY 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 341
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 5, 464
PspGI CCWGG 2 cut(s) 5, 464
PspN4I GGNNCC 3 cut(s) 108, 462, 470
PspPI GGNCC 2 cut(s) 106, 171
PspPPI RGGWCCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 110
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SacI GAGCTC 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 453, 511
SatI GCNGC 3 cut(s) 43, 117, 120
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 2 cut(s) 106, 171
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 7, 466
SduI GDGCHC 3 cut(s) 74, 341, 465
SetI ASST 4 cut(s) 24, 93, 341, 352
SfaNI GCATC 1 cut(s) 70
SinI GGWCC 2 cut(s) 106, 171
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SsiI CCGC 5 cut(s) 43, 94, 117, 120, 269
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 5, 464
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 138
TatI WGTACW 1 cut(s) 362
TauI GCSGC 3 cut(s) 45, 119, 122
TfiI GAWTC 1 cut(s) 498
Tru1I TTAA 2 cut(s) 453, 511
Tru9I TTAA 2 cut(s) 453, 511
TscAI CASTG 2 cut(s) 79, 103
TspDTI ATGAA 1 cut(s) 70
TspRI CASTG 2 cut(s) 79, 103
Tth111I GACNNNGTC 1 cut(s) 110
VneI GTGCAC 1 cut(s) 70
VpaK11BI GGWCC 2 cut(s) 106, 171
XceI RCATGY 1 cut(s) 14
XspI CTAG 1 cut(s) 360
ZraI GACGTC 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.