AT5G65207

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
26052200 .. 26052717
518 bp
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UTR
Exon/CDS
Intron
AT5G65207.1

Sequence Viewer

Length: 222 bp
ATGGCGGACATAGCGATTTTGGTGGCGGAGGAGTACGAGAGGAGGATGAAGCATACGACGGTGGGTTCGAGATCATCGCCGGTGGAATTTGATTGGTGGAAGATAATTCCGGCGAAGATGACTATAGCTTTTGACAAGATGAAGATTGAGAGTTTGAAGAAGAATTTTGAAGCTAAATCTGAGTTTGCTTTAGCCATCTCTCATGGCTTCTTCTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.38

Weight (kDa)

8.05

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10040 AT5G65207
prunus_persica Prupe.6G177500_v2.0.a1
pyrus_communis pycom08g16770
rosa_laevigata RLG00000018202
rosa_multiflora Rmu_ssc0000197.1_g000063
rosa_roxburghii Rroxscaffold_2G00127950 Rroxscaffold_2G00128810
rosa_samantha Rh2AG256600 Rh2BG267200 Rh2CG262200 Rh2DG265000
rosa_wichuraiana Rw2G020070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 26
AcsI RAATTY 2 cut(s) 86, 163
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 2 cut(s) 157, 170
AluBI AGCT 2 cut(s) 128, 173
AluI AGCT 2 cut(s) 128, 173
ApoI RAATTY 2 cut(s) 86, 163
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
BccI CCATC 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 79
BseGI GGATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 44, 55
BsiSI CCGG 2 cut(s) 80, 110
Bsp143I GATC 1 cut(s) 71
BspACI CCGC 2 cut(s) 5, 26
BspCNI CTCAG 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 79
BssMI GATC 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 79
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 203
CviJI RGCY 4 cut(s) 128, 173, 194, 207
CviKI_1 RGCY 4 cut(s) 128, 173, 194, 207
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
EciI GGCGGA 2 cut(s) 20, 41
FaeI CATG 1 cut(s) 206
FaiI YATR 4 cut(s) 11, 54, 125, 204
FatI CATG 1 cut(s) 202
FokI GGATG 1 cut(s) 58
HapII CCGG 2 cut(s) 80, 110
Hin1II CATG 1 cut(s) 206
HpaII CCGG 2 cut(s) 80, 110
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 71
LpnPI CCDG 2 cut(s) 93, 123
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 6 cut(s) 112, 127, 154, 169, 172, 202
MluCI AATT 3 cut(s) 86, 105, 163
MnlI CCTC 3 cut(s) 22, 33, 36
MspI CCGG 2 cut(s) 80, 110
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 71
NlaIII CATG 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 65
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 71
SetI ASST 2 cut(s) 130, 175
SfcI CTRYAG 1 cut(s) 123
SgeI CNNG 6 cut(s) 49, 81, 92, 122, 148, 215
SgrAI CRCCGGYG 1 cut(s) 79
Sse9I AATT 3 cut(s) 86, 105, 163
SsiI CCGC 2 cut(s) 5, 26
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 68
TasI AATT 3 cut(s) 86, 105, 163
TspDTI ATGAA 2 cut(s) 62, 155
XapI RAATTY 2 cut(s) 86, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.