Prupe.6G177500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
18258984 .. 18259241
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G177500.1

Sequence Viewer

Length: 240 bp
ATGGCAGATATTGCAATTTTGGTAGCTGAAGAGTATGAGAGGAGGGTGAAGAATGCAAGGAAGGCTGGATCTGCTGAAGGAGATCATCAGCTGGAGACTGACTTGTTTTCCTGCGTTTCAGTTATGGCTCACTCCCTCCACAAGAAGATTGGACAAGAAAAGATGGAGTTTGTCAAGTGGGTTATGGAGCCCAAGAGCCAGATTGGTCTTGAGGCCTCCAATGGCTTCTTCTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.83

Weight (kDa)

5.87

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10040 AT5G65207
prunus_persica Prupe.6G177500_v2.0.a1
pyrus_communis pycom08g16770
rosa_laevigata RLG00000018202
rosa_multiflora Rmu_ssc0000197.1_g000063
rosa_roxburghii Rroxscaffold_2G00127950 Rroxscaffold_2G00128810
rosa_samantha Rh2AG256600 Rh2BG267200 Rh2CG262200 Rh2DG265000
rosa_wichuraiana Rw2G020070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 76
AcuI CTGAAG 2 cut(s) 48, 96
AjuI GAANNNNNNNTTGG 1 cut(s) 212
AluBI AGCT 2 cut(s) 26, 91
AluI AGCT 2 cut(s) 26, 91
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 76
AoxI GGCC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 58
BanII GRGCYC 1 cut(s) 192
BccI CCATC 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 68, 82
BspANI GGCC 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 1 cut(s) 76
BssMI GATC 2 cut(s) 68, 82
Bst6I CTCTTC 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 11
BstKTI GATC 2 cut(s) 71, 85
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 68, 82
BstMWI GCNNNNNNNGC 3 cut(s) 11, 62, 71
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 215
CviJI RGCY 8 cut(s) 26, 65, 91, 128, 190, 198, 215, 225
CviKI_1 RGCY 8 cut(s) 26, 65, 91, 128, 190, 198, 215, 225
DpnI GATC 2 cut(s) 70, 84
DpnII GATC 2 cut(s) 68, 82
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 48, 96
EcoT38I GRGCYC 1 cut(s) 192
FaiI YATR 3 cut(s) 36, 125, 185
FriOI GRGCYC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 215
HphI GGTGA 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 55, 71
HpyCH4V TGCA 2 cut(s) 14, 56
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 62, 71
Kzo9I GATC 2 cut(s) 68, 82
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 4 cut(s) 51, 77, 124, 212
MalI GATC 2 cut(s) 70, 84
MboI GATC 2 cut(s) 68, 82
MboII GAAGA 4 cut(s) 41, 61, 157, 220
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 15
MnlI CCTC 5 cut(s) 33, 36, 146, 205, 226
MspA1I CMGCKG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 58
MwoI GCNNNNNNNGC 3 cut(s) 11, 62, 71
NdeII GATC 2 cut(s) 68, 82
NlaIV GGNNCC 1 cut(s) 189
PceI AGGCCT 1 cut(s) 215
PctI GAATGC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 91
Sau3AI GATC 2 cut(s) 68, 82
SduI GDGCHC 1 cut(s) 192
SetI ASST 2 cut(s) 28, 93
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 15
SseBI AGGCCT 1 cut(s) 215
StuI AGGCCT 1 cut(s) 215
TasI AATT 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.