Rroxscaffold_2G00128810

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
64546499 .. 64546726
228 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00128810.1

Sequence Viewer

Length: 228 bp
ATGGCTGATATTGCGATTTTGGTTGCTGAAGAGTATGAGAGAAGGGTGAAGAGCTCAAGAAAAGCTGGTGAGGCTAGTACTGACTTGGCTTCTTGTGTTTCAGTTTTGGCTCAAACCCTGAAGGAGAAGATTGGAAAAGAAAAGATGGAGTTTCTTGTGAAGTGGGTTATGGAGGAGCCCAGGAGCCAGATTGGTGTTGAAGCTTCCAATGGATTCTTCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.3

Weight (kDa)

5.44

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10040 AT5G65207
prunus_persica Prupe.6G177500_v2.0.a1
pyrus_communis pycom08g16770
rosa_laevigata RLG00000018202
rosa_multiflora Rmu_ssc0000197.1_g000063
rosa_roxburghii Rroxscaffold_2G00127950 Rroxscaffold_2G00128810
rosa_samantha Rh2AG256600 Rh2BG267200 Rh2CG262200 Rh2DG265000
rosa_wichuraiana Rw2G020070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 48, 140
AfaI GTAC 1 cut(s) 79
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 1 cut(s) 179
AjuI GAANNNNNNNTTGG 1 cut(s) 200
AluBI AGCT 3 cut(s) 54, 65, 203
AluI AGCT 3 cut(s) 54, 65, 203
Alw21I GWGCWC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 58, 80
BanII GRGCYC 2 cut(s) 56, 180
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 181
BfaI CTAG 1 cut(s) 75
BmcAI AGTACT 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 177, 185
BmrFI CCNGG 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 56, 180
BspLI GGNNCC 2 cut(s) 177, 185
BspQI GCTCTTC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 24, 44
BstMWI GCNNNNNNNGC 2 cut(s) 11, 71
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
Csp6I GTAC 1 cut(s) 78
CviJI RGCY 9 cut(s) 5, 54, 65, 74, 89, 110, 178, 186, 203
CviKI_1 RGCY 9 cut(s) 5, 54, 65, 74, 89, 110, 178, 186, 203
CviQI GTAC 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 24, 44
EarI CTCTTC 2 cut(s) 24, 44
Ecl136II GAGCTC 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 56, 180
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 2 cut(s) 48, 140
EcoICRI GAGCTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 179
EcoT38I GRGCYC 2 cut(s) 56, 180
FaiI YATR 2 cut(s) 36, 170
FriOI GRGCYC 2 cut(s) 56, 180
FspBI CTAG 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 1 cut(s) 213
HphI GGTGA 2 cut(s) 58, 80
Hpy188III TCNNGA 1 cut(s) 57
HpyAV CCTTC 2 cut(s) 36, 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 71
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 2 cut(s) 175, 183
LpnPI CCDG 5 cut(s) 51, 131, 166, 193, 200
MaeI CTAG 1 cut(s) 75
MboII GAAGA 4 cut(s) 41, 61, 139, 208
MhlI GDGCHC 2 cut(s) 56, 180
MnlI CCTC 2 cut(s) 64, 166
MseI TTAA 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 11, 71
NlaIV GGNNCC 2 cut(s) 177, 185
PciSI GCTCTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 177, 185
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SacI GAGCTC 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 226
ScaI AGTACT 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 2 cut(s) 56, 180
SetI ASST 3 cut(s) 56, 67, 205
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SspMI CTAG 1 cut(s) 75
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 179
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.