pycom08g16770

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
16838283 .. 16838531
249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g16770.1

Sequence Viewer

Length: 249 bp
ATGGCAGATATTGCAATTTTGGTGGCAGAAGAGCATGAGAGAAGCGTAAAGAATGGAAGAAAGGATGATGATCATCATCAGCAGCAGCAGCAGCAGCAGTTAAAGAGTGAGTTGGGTTCTCGTGTTTCGGTTTTGGCTCAAACCCTGCAGAAGAAGATTGGACACCCAAAGATGGAGTTTTTCAAGTGGGCAAAGGAGCCCAGAAGCCAAGTTGGTCTTGAGGCCTCCAATTGCTTCTTCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.38

Weight (kDa)

7.94

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10040 AT5G65207
prunus_persica Prupe.6G177500_v2.0.a1
pyrus_communis pycom08g16770
rosa_laevigata RLG00000018202
rosa_multiflora Rmu_ssc0000197.1_g000063
rosa_roxburghii Rroxscaffold_2G00127950 Rroxscaffold_2G00128810
rosa_samantha Rh2AG256600 Rh2BG267200 Rh2CG262200 Rh2DG265000
rosa_wichuraiana Rw2G020070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 184
AjuI GAANNNNNNNTTGG 1 cut(s) 221
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 5 cut(s) 82, 85, 88, 91, 94
BanII GRGCYC 1 cut(s) 201
BauI CACGAG 1 cut(s) 120
BbvI GCAGC 5 cut(s) 94, 97, 100, 103, 106
BccI CCATC 1 cut(s) 166
BclI TGATCA 1 cut(s) 70
BfmI CTRYAG 1 cut(s) 146
BisI GCNGC 5 cut(s) 83, 86, 89, 92, 95
BlsI GCNGC 5 cut(s) 84, 87, 90, 93, 96
BmiI GGNNCC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 239
BsaBI GATNNNNATC 3 cut(s) 69, 72, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse8I GATNNNNATC 3 cut(s) 69, 72, 75
BseGI GGATG 1 cut(s) 70
BseJI GATNNNNATC 3 cut(s) 69, 72, 75
BseLI CCNNNNNNNGG 1 cut(s) 172
BseXI GCAGC 5 cut(s) 94, 97, 100, 103, 106
BshFI GGCC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 172
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 70
BspANI GGCC 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 24
BssMI GATC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 11
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 11, 88, 91, 94
BstSFI CTRYAG 1 cut(s) 146
BstV1I GCAGC 5 cut(s) 94, 97, 100, 103, 106
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 70
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 1 cut(s) 35
CviJI RGCY 4 cut(s) 137, 199, 207, 224
CviKI_1 RGCY 4 cut(s) 137, 199, 207, 224
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 1 cut(s) 38
FaiI YATR 1 cut(s) 36
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 1 cut(s) 34
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 5 cut(s) 83, 86, 89, 92, 95
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 5 cut(s) 83, 86, 89, 92, 95
GluI GCNGC 5 cut(s) 83, 86, 89, 92, 95
HaeIII GGCC 1 cut(s) 224
Hin1II CATG 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 14, 148
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 88, 91, 94
Hsp92II CATG 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 1 cut(s) 70
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 2 cut(s) 158, 214
Lsp1109I GCAGC 5 cut(s) 94, 97, 100, 103, 106
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 5 cut(s) 41, 69, 163, 166, 229
MfeI CAATTG 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 2 cut(s) 15, 229
MnlI CCTC 2 cut(s) 214, 235
MseI TTAA 2 cut(s) 101, 247
MunI CAATTG 1 cut(s) 229
MwoI GCNNNNNNNGC 4 cut(s) 11, 88, 91, 94
NdeII GATC 1 cut(s) 70
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 198
PceI AGGCCT 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 24
PkrI GCNGC 5 cut(s) 84, 87, 90, 93, 96
PspN4I GGNNCC 1 cut(s) 198
PstI CTGCAG 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 101, 247
SatI GCNGC 5 cut(s) 83, 86, 89, 92, 95
Sau3AI GATC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 146
SgeI CNNG 8 cut(s) 47, 132, 134, 157, 196, 213, 221, 230
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 2 cut(s) 15, 229
SseBI AGGCCT 1 cut(s) 224
StuI AGGCCT 1 cut(s) 224
TasI AATT 2 cut(s) 15, 229
Tru1I TTAA 2 cut(s) 101, 247
Tru9I TTAA 2 cut(s) 101, 247
TseI GCWGC 5 cut(s) 82, 85, 88, 91, 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.