AT5G11412

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0019142
Physical Location & Seq
Reverse (-)
3640026 .. 3640876
851 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11412.1

Sequence Viewer

Length: 528 bp
ATGAAGATTTTCATATCTAGTACTTTTCTCCGATTGTTGGATTTTCTAAATGTATTTCTAATTGTTGGAACTTTCTTGTCACTAATTTTTTTTGATACTTGTGACAGAGACGTGGCTCAACATTACGCGAACGAAAACGTTGACACTAGATACACTAAGATATACGTGGGAGGTCTGCCTTGGGAAACAAGAAACGAAGGTTTGAGAAGTTACTTCGAACAATTTGGAGATATTATACATGTTAATATGGTTTGCGATAGAGAAACGGGACGATCAGAGGGTTATGGTTTTGTCACGTTTAGAGATGCTGAATCTGCAACGAGAGCTTGCCAGAATCCAAAACCGGTCATAGACGGACGAGAGGCCAAGTGCAATCTTGCTTATATTGGTGGTAGGGTTAACAATAACCAAAACGCCCAACAACAACAAGTACTACCTATGTACCCAACTGGGACCAGTTTCCACCACCCCAATATCATACCTACACACCTTATGGTTATTGGACACCCCATGGCCCTTACTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

175

Amino Acids

19.9

Weight (kDa)

6.28

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 54 - 112 7.2e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11412 AT5G53680 AT5G53720
malus_domestica MD07G1298100.v1.1
prunus_persica Prupe.2G197200_v2.0.a1 Prupe.2G318000_v2.0.a1 Prupe.2G318000_v2.0.a1
pyrus_communis pycom07g27060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 128
AclI AACGTT 1 cut(s) 138
AfaI GTAC 3 cut(s) 22, 432, 443
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 238
AgeI ACCGGT 1 cut(s) 343
AjiI CACGTC 1 cut(s) 112
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 102
AoxI GGCC 2 cut(s) 363, 513
AsiGI ACCGGT 1 cut(s) 343
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 453, 514
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 1 cut(s) 453
BaeI ACNNNNGTAYC 2 cut(s) 425, 458
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 2 cut(s) 18, 147
BmcAI AGTACT 2 cut(s) 22, 432
Bme18I GGWCC 1 cut(s) 453
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 453, 514
BmiI GGNNCC 1 cut(s) 454
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 216
BsaAI YACGTR 2 cut(s) 166, 525
BsaJI CCNNGG 2 cut(s) 179, 510
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 2 cut(s) 454, 456
BseDI CCNNGG 2 cut(s) 179, 510
BseLI CCNNNNNNNGG 1 cut(s) 37
BseNI ACTGG 2 cut(s) 454, 456
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 2 cut(s) 365, 515
BshTI ACCGGT 1 cut(s) 343
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 2 cut(s) 282, 466
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 102
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 282, 466
BsnI GGCC 2 cut(s) 365, 515
Bsp119I TTCGAA 1 cut(s) 216
Bsp143I GATC 1 cut(s) 272
Bsp19I CCATGG 1 cut(s) 510
BspANI GGCC 2 cut(s) 365, 515
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 454
BspT104I TTCGAA 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 2 cut(s) 454, 456
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 179, 510
BssMI GATC 1 cut(s) 272
BssT1I CCWWGG 2 cut(s) 179, 510
BstBAI YACGTR 2 cut(s) 166, 525
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 510
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 1 cut(s) 275
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 314, 323
BstNSI RCATGY 1 cut(s) 242
BstUI CGCG 1 cut(s) 128
BsuRI GGCC 2 cut(s) 365, 515
BtgI CCRYGG 1 cut(s) 510
BtrI CACGTC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 453, 514
Csp6I GTAC 3 cut(s) 21, 431, 442
CspAI ACCGGT 1 cut(s) 343
CviAII CATG 2 cut(s) 239, 511
CviJI RGCY 4 cut(s) 116, 326, 365, 515
CviKI_1 RGCY 4 cut(s) 116, 326, 365, 515
CviQI GTAC 3 cut(s) 21, 431, 442
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 274
DpnII GATC 1 cut(s) 272
Eco130I CCWWGG 2 cut(s) 179, 510
Eco47I GGWCC 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 179, 510
ErhI CCWWGG 2 cut(s) 179, 510
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 2 cut(s) 242, 514
FaqI GGGAC 2 cut(s) 282, 466
FatI CATG 2 cut(s) 238, 510
FspBI CTAG 2 cut(s) 18, 147
HaeIII GGCC 2 cut(s) 365, 515
HapII CCGG 1 cut(s) 344
Hin1II CATG 2 cut(s) 242, 514
HincII GTYRAC 2 cut(s) 142, 400
HindII GTYRAC 2 cut(s) 142, 400
HinfI GANTC 2 cut(s) 311, 334
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 142, 400
Hpy188I TCNGA 2 cut(s) 32, 277
Hpy8I GTNNAC 2 cut(s) 142, 400
HpyAV CCTTC 1 cut(s) 191
HpyCH4IV ACGT 5 cut(s) 111, 138, 165, 296, 524
HpyCH4V TGCA 2 cut(s) 317, 372
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 323
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 5 cut(s) 111, 138, 165, 296, 524
Hsp92II CATG 2 cut(s) 242, 514
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 1 cut(s) 272
LpnPI CCDG 4 cut(s) 344, 357, 435, 469
LweI GCATC 1 cut(s) 295
MaeI CTAG 2 cut(s) 18, 147
MaeII ACGT 5 cut(s) 111, 138, 165, 296, 524
MaeIII GTNAC 4 cut(s) 78, 101, 209, 292
MalI GATC 1 cut(s) 274
MboI GATC 1 cut(s) 272
MboII GAAGA 1 cut(s) 16
MluCI AATT 3 cut(s) 60, 84, 221
MmeI TCCRAC 2 cut(s) 18, 46
MnlI CCTC 3 cut(s) 164, 271, 355
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 243, 399
MspI CCGG 1 cut(s) 344
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 314, 323
NcoI CCATGG 1 cut(s) 510
NdeII GATC 1 cut(s) 272
NlaIII CATG 2 cut(s) 242, 514
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 3 cut(s) 78, 101, 292
NspI RCATGY 1 cut(s) 242
NspV TTCGAA 1 cut(s) 216
PciI ACATGT 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 311, 334
PinAI ACCGGT 1 cut(s) 343
Ppu21I YACGTR 2 cut(s) 166, 525
PscI ACATGT 1 cut(s) 238
Psp1406I AACGTT 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 2 cut(s) 453, 514
RsaI GTAC 3 cut(s) 22, 432, 443
RsaNI GTAC 3 cut(s) 21, 431, 442
SaqAI TTAA 2 cut(s) 243, 399
Sau3AI GATC 1 cut(s) 272
Sau96I GGNCC 2 cut(s) 453, 514
ScaI AGTACT 2 cut(s) 22, 432
SfaNI GCATC 1 cut(s) 295
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 1 cut(s) 453
Sse9I AATT 3 cut(s) 60, 84, 221
SspMI CTAG 2 cut(s) 18, 147
StyI CCWWGG 2 cut(s) 179, 510
TaiI ACGT 5 cut(s) 114, 141, 168, 299, 527
TaqI TCGA 1 cut(s) 216
TasI AATT 3 cut(s) 60, 84, 221
TatI WGTACW 2 cut(s) 20, 430
TfiI GAWTC 2 cut(s) 311, 334
Tru1I TTAA 2 cut(s) 243, 399
Tru9I TTAA 2 cut(s) 243, 399
TseFI GTSAC 3 cut(s) 78, 101, 292
Tsp45I GTSAC 3 cut(s) 78, 101, 292
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 453
XceI RCATGY 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 18, 147
ZrmI AGTACT 2 cut(s) 22, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.