Prupe.2G197200_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0019142
Physical Location & Seq
Forward (+)
23439812 .. 23442995
3184 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G197200.1

Sequence Viewer

Length: 873 bp
ATGTCTCAACCAAGGCAATTTCAGATGGTGGGTAGTAACATTAATAATCCTGGCCAATACAATGACACAACTTTCACCAAAATCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGGGAGACTATGAGAAGGTATTTTGAACAGTTTGGAGAGATCTTAGAGGCTGTTGTGATTACAGATAAGAACACTGGGAGGTCCAAGGGTTATGGATTTGTTACATTTAAGGATTCAGAGGCAGCCATGAGAGCATGTCAAAATCCATCCCCTGTGATTGATGGAAGGAGGGCAAATTGCAATCTTGCATCTCTTGGTGCACAAAAGACTCGTCCCCCAACTCCTCATCAGCAGCATGGTGCAGGAAGGTTCAGACCAGCACATGGGTTGGTGGCTCCACCTGCTTATCATGGCTCTTCATCACCATACTTCCATCAACCAACTGGTCAATACACATTTCCTTATTCAGCTTATGGAATTATTATAGTGTTTATGGTGGTCAACAATTCTCACCTTATTACACCACAACTGGGGCATCAGGGCCAACTGGCATGTACCAAAATGTCTACCCATTATATGCTCAGTATGCACAGAGCAGTAGCCAGGCTCATGGTCTTGGAGTTCAATATCCCCAAATGGTACAGTACCCATATTTGCCTCATCAGCCTTATGCTGCTGGTTCCACAGCTGGGATTCTCTCTCTTCCTTCTTCAATGCCAATTACCACCACCACAACTACCACCACAGGTACAACAACAGCAGCAGCAACTGGTGCTGGTGCTTCTTCACAAGCCTCTGCAGCCAATTCTGAACAGAATTCTTCAACTTAAATGTCTACAGAGAGAGAAAAAAAAAACAATGTCTTCTTTACAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

291

Amino Acids

32.72

Weight (kDa)

9.82

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11412 AT5G53680 AT5G53720
malus_domestica MD07G1298100.v1.1
prunus_persica Prupe.2G197200_v2.0.a1 Prupe.2G318000_v2.0.a1 Prupe.2G318000_v2.0.a1
pyrus_communis pycom07g27060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
AccB7I CCANNNNNTGG 1 cut(s) 377
AccI GTMKAC 2 cut(s) 560, 829
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 810
AfaI GTAC 4 cut(s) 550, 635, 640, 744
AfiI CCNNNNNNNGG 3 cut(s) 377, 524, 683
AgsI TTSAA 4 cut(s) 140, 619, 707, 818
AjnI CCWGG 2 cut(s) 49, 596
AluBI AGCT 2 cut(s) 464, 682
AluI AGCT 2 cut(s) 464, 682
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 3 cut(s) 9, 101, 113
Alw44I GTGCAC 1 cut(s) 312
AlwNI CAGNNNCTG 1 cut(s) 763
AoxI GGCC 2 cut(s) 52, 535
ApaLI GTGCAC 1 cut(s) 312
ApeKI GCWGC 6 cut(s) 236, 346, 667, 754, 757, 793
ApoI RAATTY 1 cut(s) 810
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
AseI ATTAAT 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 195, 535
AsuHPI GGTGA 3 cut(s) 67, 408, 497
AvaII GGWCC 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 849
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 6 cut(s) 248, 358, 654, 766, 769, 805
BccI CCATC 4 cut(s) 19, 268, 269, 435
BciT130I CCWGG 2 cut(s) 51, 598
BcoDI GTCTC 3 cut(s) 9, 101, 113
BfmI CTRYAG 2 cut(s) 791, 830
BfuAI ACCTGC 1 cut(s) 403
BglII AGATCT 1 cut(s) 153
BisI GCNGC 6 cut(s) 237, 347, 668, 755, 758, 794
BlsI GCNGC 6 cut(s) 238, 348, 669, 756, 759, 795
Bme1390I CCNGG 2 cut(s) 51, 598
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 195, 535
BmiI GGNNCC 2 cut(s) 390, 675
BmrFI CCNGG 2 cut(s) 51, 598
BmrI ACTGGG 2 cut(s) 198, 533
BmsI GCATC 2 cut(s) 311, 538
BmuI ACTGGG 2 cut(s) 198, 533
BpiI GAAGAC 1 cut(s) 849
BsaJI CCNNGG 2 cut(s) 11, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 377, 524, 683
Bse1I ACTGG 5 cut(s) 193, 442, 528, 546, 768
BseBI CCWGG 2 cut(s) 51, 598
BseDI CCNNGG 2 cut(s) 11, 198
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 3 cut(s) 377, 524, 683
BseMII CTCAG 2 cut(s) 125, 589
BseNI ACTGG 5 cut(s) 193, 442, 528, 546, 768
BseRI GAGGAG 1 cut(s) 327
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 6 cut(s) 248, 358, 654, 766, 769, 805
BseYI CCCAGC 1 cut(s) 682
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 2 cut(s) 54, 537
BsiHKAI GWGCWC 1 cut(s) 316
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 377, 524, 683
BsmAI GTCTC 3 cut(s) 9, 101, 113
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 2 cut(s) 54, 537
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 153
BspANI GGCC 2 cut(s) 54, 537
BspCNI CTCAG 2 cut(s) 124, 588
BspLI GGNNCC 2 cut(s) 390, 675
BspMAI CTGCAG 1 cut(s) 795
BspMI ACCTGC 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 415
BsrI ACTGG 5 cut(s) 193, 442, 528, 546, 768
BssECI CCNNGG 2 cut(s) 11, 198
BssMI GATC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 11, 198
Bst2UI CCWGG 2 cut(s) 51, 598
Bst4CI ACNGT 2 cut(s) 144, 638
Bst6I CTCTTC 2 cut(s) 415, 701
BstAPI GCANNNNNTGC 1 cut(s) 766
BstDEI CTNAG 3 cut(s) 111, 157, 575
BstF5I GGATG 1 cut(s) 260
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 3 cut(s) 9, 101, 113
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 6 cut(s) 245, 395, 580, 657, 766, 793
BstNI CCWGG 2 cut(s) 51, 598
BstNSI RCATGY 2 cut(s) 252, 549
BstSCI CCNGG 2 cut(s) 49, 596
BstSFI CTRYAG 2 cut(s) 791, 830
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 6 cut(s) 248, 358, 654, 766, 769, 805
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 604
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 2 cut(s) 54, 537
BtsCI GGATG 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 403
CaiI CAGNNNCTG 1 cut(s) 763
Cfr13I GGNCC 2 cut(s) 195, 535
Csp6I GTAC 4 cut(s) 549, 634, 639, 743
CviAII CATG 7 cut(s) 241, 249, 350, 377, 404, 546, 604
CviQI GTAC 4 cut(s) 549, 634, 639, 743
DdeI CTNAG 3 cut(s) 111, 157, 575
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 2 cut(s) 415, 701
EarI CTCTTC 2 cut(s) 415, 701
Eco130I CCWWGG 2 cut(s) 11, 198
Eco47I GGWCC 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 810
EcoRII CCWGG 2 cut(s) 49, 596
EcoT14I CCWWGG 2 cut(s) 11, 198
ErhI CCWWGG 2 cut(s) 11, 198
FaeI CATG 7 cut(s) 244, 252, 353, 380, 407, 549, 607
FaqI GGGAC 1 cut(s) 312
FatI CATG 7 cut(s) 240, 248, 349, 376, 403, 545, 603
FblI GTMKAC 2 cut(s) 560, 829
Fnu4HI GCNGC 6 cut(s) 237, 347, 668, 755, 758, 794
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 6 cut(s) 237, 347, 668, 755, 758, 794
GluI GCNGC 6 cut(s) 237, 347, 668, 755, 758, 794
GsaI CCCAGC 1 cut(s) 686
HaeIII GGCC 2 cut(s) 54, 537
Hin1II CATG 7 cut(s) 244, 252, 353, 380, 407, 549, 607
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 4 cut(s) 109, 227, 322, 687
HphI GGTGA 3 cut(s) 67, 408, 497
Hpy166II GTNNAC 4 cut(s) 314, 496, 561, 830
Hpy188I TCNGA 5 cut(s) 24, 114, 232, 368, 804
Hpy8I GTNNAC 4 cut(s) 314, 496, 561, 830
HpyAV CCTTC 4 cut(s) 123, 273, 354, 710
HpyCH4III ACNGT 2 cut(s) 144, 638
HpyCH4V TGCA 6 cut(s) 294, 302, 314, 356, 583, 793
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 395, 580, 657, 766, 793
HpyF3I CTNAG 3 cut(s) 111, 157, 575
Hsp92II CATG 7 cut(s) 244, 252, 353, 380, 407, 549, 607
Kzo9I GATC 1 cut(s) 153
LguI GCTCTTC 1 cut(s) 415
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 6 cut(s) 248, 358, 654, 766, 769, 805
LweI GCATC 2 cut(s) 311, 538
MaeIII GTNAC 2 cut(s) 35, 214
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 6 cut(s) 402, 688, 695, 770, 806, 849
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 316
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 7 cut(s) 17, 289, 471, 499, 713, 798, 810
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 2 cut(s) 103, 316
MnlI CCTC 8 cut(s) 108, 154, 186, 226, 276, 348, 662, 798
Mox20I TGGCCA 1 cut(s) 54
MscI TGGCCA 1 cut(s) 54
MseI TTAA 3 cut(s) 42, 222, 822
Msp20I TGGCCA 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 682
MspR9I CCNGG 2 cut(s) 51, 598
MvaI CCWGG 2 cut(s) 51, 598
MwoI GCNNNNNNNGC 6 cut(s) 245, 395, 580, 657, 766, 793
NdeII GATC 1 cut(s) 153
NlaIII CATG 7 cut(s) 244, 252, 353, 380, 407, 549, 607
NlaIV GGNNCC 2 cut(s) 390, 675
NspI RCATGY 2 cut(s) 252, 549
PaqCI CACCTGC 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 227, 687
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 6 cut(s) 238, 348, 669, 756, 759, 795
PleI GAGTC 2 cut(s) 103, 316
PpsI GAGTC 2 cut(s) 103, 316
PshBI ATTAAT 1 cut(s) 42
Psp6I CCWGG 2 cut(s) 49, 596
PspFI CCCAGC 1 cut(s) 682
PspGI CCWGG 2 cut(s) 49, 596
PspN4I GGNNCC 2 cut(s) 390, 675
PspPI GGNCC 2 cut(s) 195, 535
PstI CTGCAG 1 cut(s) 795
PstNI CAGNNNCTG 1 cut(s) 763
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 682
RsaI GTAC 4 cut(s) 550, 635, 640, 744
RsaNI GTAC 4 cut(s) 549, 634, 639, 743
SapI GCTCTTC 1 cut(s) 415
SaqAI TTAA 3 cut(s) 42, 222, 822
SatI GCNGC 6 cut(s) 237, 347, 668, 755, 758, 794
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 2 cut(s) 195, 535
SchI GAGTC 2 cut(s) 103, 316
ScrFI CCNGG 2 cut(s) 51, 598
SduI GDGCHC 1 cut(s) 316
SetI ASST 8 cut(s) 134, 197, 365, 397, 466, 510, 684, 744
SfaNI GCATC 2 cut(s) 311, 538
SfcI CTRYAG 2 cut(s) 791, 830
SinI GGWCC 1 cut(s) 195
Sse9I AATT 7 cut(s) 17, 289, 471, 499, 713, 798, 810
StyD4I CCNGG 2 cut(s) 49, 596
StyI CCWWGG 2 cut(s) 11, 198
TaaI ACNGT 2 cut(s) 144, 638
TasI AATT 7 cut(s) 17, 289, 471, 499, 713, 798, 810
TfiI GAWTC 2 cut(s) 227, 687
Tru1I TTAA 3 cut(s) 42, 222, 822
Tru9I TTAA 3 cut(s) 42, 222, 822
TscAI CASTG 1 cut(s) 193
TseI GCWGC 6 cut(s) 236, 346, 667, 754, 757, 793
TspDTI ATGAA 1 cut(s) 402
TspRI CASTG 1 cut(s) 193
Van91I CCANNNNNTGG 1 cut(s) 377
VneI GTGCAC 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 195
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 1 cut(s) 810
XceI RCATGY 2 cut(s) 252, 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 434
XmiI GTMKAC 2 cut(s) 560, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.