MD07G1298100.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0019142
Physical Location & Seq
Forward (+)
35783346 .. 35785108
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1298100.v1.1.491

Sequence Viewer

Length: 702 bp
ATGATCAAGGTCGGAGCAAACGGTTACAGTGGCAAACAATTTGGTGATACAACCAAAACCAAGATATTTGTCGGAGGATTGCCGTGGGAGACTCGAGTCGGCACCATGAGACGCTATTTCGAGCAGTTCGGGGAGATCCTGGAGGCCGTTGTCATCACTGACAAGTTCACAGCAAGATCAAAAGGCTATGGTTTTGTAACGTTCAAGGATCCAGAATCAGCTATGAGAGCTTGTGAAAACCCTAATCCTATCATCGATGGAAGGCGAGCTAATTGTAATCTTGCAGTCCTCGGTGCACAGAAGAATCGTCCAACCACTCCTCAGCCTCAACATGAAGTTGTTGAGGGAATGAAGAAAACCAGATCATCATCCATACCTTTCATCAACACCTATTTCCATCACTACAACCCCCAATATGCATTAATCCCTTATTCGACTTACGGATATCCAATTTACCAGCAAGACAATAACGTTGCATTAATGAATTATAATTACACCGGATATGGTGGCTGGGGGCAACAGCAACACTACTATCCTTATCCTGGGGTGTACTATTATCCGTGTGTTCCAGTACAAGCACAACCTGGACATAATAGTCCAACAACATCCAATCCCAGACCCAAACTACAGAGCTTACCGCTTGCACTTCCTACAACTACAGTCACAGGTACTTACTCCAACTTTGGTCTCTACTCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0006950 GO:0006974 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010830 GO:0010831 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0033554 GO:0034248 GO:0034249 GO:0035925 GO:0036002 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0048024 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097157 GO:0097159 GO:1901363 GO:1901861 GO:1901863 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1903311 GO:1903312 GO:1903313 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

234

Amino Acids

26.22

Weight (kDa)

9.27

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 22 - 80 4.2e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11412 AT5G53680 AT5G53720
malus_domestica MD07G1298100.v1.1
prunus_persica Prupe.2G197200_v2.0.a1 Prupe.2G318000_v2.0.a1 Prupe.2G318000_v2.0.a1
pyrus_communis pycom07g27060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AasI GACNNNNNNGTC 1 cut(s) 594
AccB1I GGYRCC 1 cut(s) 101
AciI CCGC 1 cut(s) 638
AclI AACGTT 2 cut(s) 200, 471
AclWI GGATC 3 cut(s) 130, 203, 216
AfaI GTAC 3 cut(s) 551, 573, 670
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 3 cut(s) 138, 541, 583
AluBI AGCT 4 cut(s) 221, 230, 269, 633
AluI AGCT 4 cut(s) 221, 230, 269, 633
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 3 cut(s) 83, 103, 692
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 3 cut(s) 130, 203, 216
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 1 cut(s) 144
ApaLI GTGCAC 1 cut(s) 294
AseI ATTAAT 2 cut(s) 422, 479
AsuHPI GGTGA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 298
BamHI GGATCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 298
BbvCI CCTCAGC 1 cut(s) 321
BccI CCATC 2 cut(s) 251, 405
BceAI ACGGC 2 cut(s) 67, 131
BciT130I CCWGG 3 cut(s) 140, 543, 585
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 83, 103, 692
BfaI CTAG 1 cut(s) 700
BfmI CTRYAG 2 cut(s) 626, 657
Bme1390I CCNGG 3 cut(s) 140, 543, 585
BmeT110I CYCGRG 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 103, 210
BmrFI CCNGG 3 cut(s) 140, 543, 585
BoxI GACNNNNGTC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 321
Bsa29I ATCGAT 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 692
BsaJI CCNNGG 3 cut(s) 83, 289, 542
BsaWI WCCGGW 1 cut(s) 497
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 569
Bse8I GATNNNNATC 1 cut(s) 367
BseBI CCWGG 3 cut(s) 140, 543, 585
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 3 cut(s) 83, 289, 542
BseGI GGATG 2 cut(s) 368, 605
BseJI GATNNNNATC 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 569
BseRI GAGGAG 1 cut(s) 309
BseSI GKGCMC 1 cut(s) 298
BseYI CCCAGC 1 cut(s) 510
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 3 cut(s) 83, 103, 692
BsmBI CGTCTC 1 cut(s) 103
BsnI GGCC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 692
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 5 cut(s) 3, 135, 176, 208, 362
BspACI CCGC 1 cut(s) 638
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 334
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 103, 210
BspPI GGATC 3 cut(s) 130, 203, 216
BspT107I GGYRCC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 692
BsrI ACTGG 1 cut(s) 569
BssECI CCNNGG 3 cut(s) 83, 289, 542
BssMI GATC 5 cut(s) 3, 135, 176, 208, 362
Bst2UI CCWGG 3 cut(s) 140, 543, 585
Bst4CI ACNGT 3 cut(s) 23, 29, 661
BstC8I GCNNGC 2 cut(s) 267, 642
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 83
BstF5I GGATG 2 cut(s) 368, 605
BstKTI GATC 5 cut(s) 6, 138, 179, 211, 365
BstMAI GTCTC 3 cut(s) 83, 103, 692
BstMBI GATC 5 cut(s) 3, 135, 176, 208, 362
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 3 cut(s) 140, 543, 585
BstPAI GACNNNNGTC 1 cut(s) 95
BstSCI CCNGG 3 cut(s) 138, 541, 583
BstSFI CTRYAG 2 cut(s) 626, 657
BstSLI GKGCMC 1 cut(s) 298
BstX2I RGATCY 2 cut(s) 135, 208
BstYI RGATCY 2 cut(s) 135, 208
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 1 cut(s) 146
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 83
BtsCI GGATG 2 cut(s) 368, 605
BtsIMutI CAGTG 2 cut(s) 34, 156
Cac8I GCNNGC 2 cut(s) 267, 642
ClaI ATCGAT 1 cut(s) 255
CseI GACGC 1 cut(s) 120
Csp6I GTAC 3 cut(s) 550, 572, 669
CviAII CATG 2 cut(s) 106, 332
CviJI RGCY 8 cut(s) 146, 186, 221, 230, 269, 325, 510, 633
CviKI_1 RGCY 8 cut(s) 146, 186, 221, 230, 269, 325, 510, 633
CviQI GTAC 3 cut(s) 550, 572, 669
DdeI CTNAG 1 cut(s) 321
DpnI GATC 5 cut(s) 5, 137, 178, 210, 364
DpnII GATC 5 cut(s) 3, 135, 176, 208, 362
DrdI GACNNNNNNGTC 1 cut(s) 594
DseDI GACNNNNNNGTC 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 692
Eco32I GATATC 1 cut(s) 446
Eco88I CYCGRG 1 cut(s) 93
EcoRII CCWGG 3 cut(s) 138, 541, 583
EcoRV GATATC 1 cut(s) 446
EcoT22I ATGCAT 1 cut(s) 421
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 2 cut(s) 109, 335
FaiI YATR 9 cut(s) 107, 189, 224, 333, 374, 417, 489, 504, 591
FatI CATG 2 cut(s) 105, 331
FbaI TGATCA 1 cut(s) 3
FokI GGATG 2 cut(s) 355, 592
FspBI CTAG 1 cut(s) 700
GsaI CCCAGC 1 cut(s) 514
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 498
HgaI GACGC 1 cut(s) 120
Hin1II CATG 2 cut(s) 109, 335
HinfI GANTC 4 cut(s) 91, 96, 215, 304
HpaII CCGG 1 cut(s) 498
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 3 cut(s) 168, 296, 550
Hpy188I TCNGA 2 cut(s) 14, 74
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 3 cut(s) 168, 296, 550
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 3 cut(s) 23, 29, 661
HpyCH4IV ACGT 2 cut(s) 200, 471
HpyCH4V TGCA 5 cut(s) 284, 296, 419, 476, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 2 cut(s) 200, 471
Hsp92II CATG 2 cut(s) 109, 335
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 5 cut(s) 3, 135, 176, 208, 362
LmnI GCTCC 1 cut(s) 14
MaeI CTAG 1 cut(s) 700
MaeII ACGT 2 cut(s) 200, 471
MaeIII GTNAC 3 cut(s) 23, 196, 661
MalI GATC 5 cut(s) 5, 137, 178, 210, 364
MboI GATC 5 cut(s) 3, 135, 176, 208, 362
MboII GAAGA 2 cut(s) 313, 364
MflI RGATCY 2 cut(s) 135, 208
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 5 cut(s) 38, 271, 450, 484, 490
MlyI GAGTC 2 cut(s) 85, 105
MmeI TCCRAC 4 cut(s) 52, 335, 623, 702
MnlI CCTC 6 cut(s) 68, 136, 299, 330, 336, 337
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 2 cut(s) 422, 479
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 3 cut(s) 140, 543, 585
MvaI CCWGG 3 cut(s) 140, 543, 585
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 5 cut(s) 3, 135, 176, 208, 362
NlaIII CATG 2 cut(s) 109, 335
NlaIV GGNNCC 2 cut(s) 103, 210
NmuCI GTSAC 1 cut(s) 661
NsiI ATGCAT 1 cut(s) 421
PaeR7I CTCGAG 1 cut(s) 93
PfeI GAWTC 2 cut(s) 215, 304
PfoI TCCNGGA 1 cut(s) 138
PleI GAGTC 2 cut(s) 85, 104
PpsI GAGTC 2 cut(s) 85, 104
PshAI GACNNNNGTC 1 cut(s) 95
PshBI ATTAAT 2 cut(s) 422, 479
PsiI TTATAA 1 cut(s) 489
Psp1406I AACGTT 2 cut(s) 200, 471
Psp6I CCWGG 3 cut(s) 138, 541, 583
PspFI CCCAGC 1 cut(s) 510
PspGI CCWGG 3 cut(s) 138, 541, 583
PspN4I GGNNCC 2 cut(s) 103, 210
PspXI VCTCGAGB 1 cut(s) 93
PsuI RGATCY 2 cut(s) 135, 208
RsaI GTAC 3 cut(s) 551, 573, 670
RsaNI GTAC 3 cut(s) 550, 572, 669
SaqAI TTAA 2 cut(s) 422, 479
Sau3AI GATC 5 cut(s) 3, 135, 176, 208, 362
SchI GAGTC 2 cut(s) 85, 105
ScrFI CCNGG 3 cut(s) 140, 543, 585
SduI GDGCHC 1 cut(s) 298
SfcI CTRYAG 2 cut(s) 626, 657
Sfr274I CTCGAG 1 cut(s) 93
SlaI CTCGAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 5 cut(s) 38, 271, 450, 484, 490
SsiI CCGC 1 cut(s) 638
SspMI CTAG 1 cut(s) 700
StyD4I CCNGG 3 cut(s) 138, 541, 583
TaaI ACNGT 3 cut(s) 23, 29, 661
TaiI ACGT 2 cut(s) 203, 474
TaqI TCGA 4 cut(s) 94, 120, 255, 434
TasI AATT 5 cut(s) 38, 271, 450, 484, 490
TatI WGTACW 2 cut(s) 549, 571
TfiI GAWTC 2 cut(s) 215, 304
Tru1I TTAA 2 cut(s) 422, 479
Tru9I TTAA 2 cut(s) 422, 479
TscAI CASTG 2 cut(s) 34, 163
TseFI GTSAC 1 cut(s) 661
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 4 cut(s) 348, 365, 370, 497
TspGWI ACGGA 2 cut(s) 456, 549
TspRI CASTG 2 cut(s) 34, 163
VneI GTGCAC 1 cut(s) 294
VspI ATTAAT 2 cut(s) 422, 479
XhoI CTCGAG 1 cut(s) 93
XspI CTAG 1 cut(s) 700
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.