positive regulation of 3'-UTR-mediated mRNA stabilization
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G11412 AT5G53680 AT5G53720 |
| malus_domestica | MD07G1298100.v1.1 |
| prunus_persica | Prupe.2G197200_v2.0.a1 Prupe.2G318000_v2.0.a1 Prupe.2G318000_v2.0.a1 |
| pyrus_communis | pycom07g27060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 352 |
| AciI | CCGC | 3 cut(s) | 338, 350, 352 |
| AclI | AACGTT | 2 cut(s) | 103, 431 |
| AclWI | GGATC | 5 cut(s) | 212, 225, 329, 353, 507 |
| AcsI | RAATTY | 1 cut(s) | 307 |
| AgsI | TTSAA | 3 cut(s) | 100, 236, 306 |
| AluBI | AGCT | 2 cut(s) | 209, 455 |
| AluI | AGCT | 2 cut(s) | 209, 455 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| AlwI | GGATC | 5 cut(s) | 212, 225, 329, 353, 507 |
| ApeKI | GCWGC | 3 cut(s) | 414, 452, 474 |
| ApoI | RAATTY | 1 cut(s) | 307 |
| AspA2I | CCTAGG | 1 cut(s) | 326 |
| AsuC2I | CCSGG | 1 cut(s) | 497 |
| AsuHPI | GGTGA | 1 cut(s) | 122 |
| AvrII | CCTAGG | 1 cut(s) | 326 |
| BamHI | GGATCC | 1 cut(s) | 217 |
| BbvI | GCAGC | 3 cut(s) | 426, 464, 486 |
| BcnI | CCSGG | 1 cut(s) | 497 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BisI | GCNGC | 3 cut(s) | 415, 453, 475 |
| BlnI | CCTAGG | 1 cut(s) | 326 |
| BlsI | GCNGC | 3 cut(s) | 416, 454, 476 |
| Bme1390I | CCNGG | 1 cut(s) | 497 |
| BmiI | GGNNCC | 1 cut(s) | 219 |
| BmrFI | CCNGG | 1 cut(s) | 497 |
| BmsI | GCATC | 1 cut(s) | 426 |
| BpuMI | CCSGG | 1 cut(s) | 497 |
| Bsa29I | ATCGAT | 1 cut(s) | 154 |
| BsaAI | YACGTR | 1 cut(s) | 49 |
| BsaBI | GATNNNNATC | 1 cut(s) | 222 |
| BsaJI | CCNNGG | 3 cut(s) | 62, 326, 350 |
| Bse8I | GATNNNNATC | 1 cut(s) | 222 |
| BseCI | ATCGAT | 1 cut(s) | 154 |
| BseDI | CCNNGG | 3 cut(s) | 62, 326, 350 |
| BseGI | GGATG | 2 cut(s) | 117, 417 |
| BseJI | GATNNNNATC | 1 cut(s) | 222 |
| BseXI | GCAGC | 3 cut(s) | 426, 464, 486 |
| Bsh1236I | CGCG | 1 cut(s) | 352 |
| BshVI | ATCGAT | 1 cut(s) | 154 |
| BsiSI | CCGG | 1 cut(s) | 496 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| Bsp143I | GATC | 6 cut(s) | 151, 155, 217, 334, 358, 499 |
| BspACI | CCGC | 3 cut(s) | 338, 350, 352 |
| BspDI | ATCGAT | 1 cut(s) | 154 |
| BspFNI | CGCG | 1 cut(s) | 352 |
| BspLI | GGNNCC | 1 cut(s) | 219 |
| BspPI | GGATC | 5 cut(s) | 212, 225, 329, 353, 507 |
| BssECI | CCNNGG | 3 cut(s) | 62, 326, 350 |
| BssMI | GATC | 6 cut(s) | 151, 155, 217, 334, 358, 499 |
| BssT1I | CCWWGG | 2 cut(s) | 62, 326 |
| Bst4CI | ACNGT | 1 cut(s) | 383 |
| BstBAI | YACGTR | 1 cut(s) | 49 |
| BstC8I | GCNNGC | 1 cut(s) | 211 |
| BstDSI | CCRYGG | 1 cut(s) | 350 |
| BstF5I | GGATG | 2 cut(s) | 117, 417 |
| BstFNI | CGCG | 1 cut(s) | 352 |
| BstKTI | GATC | 6 cut(s) | 154, 158, 220, 337, 361, 502 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 6 cut(s) | 151, 155, 217, 334, 358, 499 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 197, 206 |
| BstSCI | CCNGG | 1 cut(s) | 495 |
| BstUI | CGCG | 1 cut(s) | 352 |
| BstV1I | GCAGC | 3 cut(s) | 426, 464, 486 |
| BstX2I | RGATCY | 2 cut(s) | 217, 499 |
| BstYI | RGATCY | 2 cut(s) | 217, 499 |
| Bsu15I | ATCGAT | 1 cut(s) | 154 |
| BsuTUI | ATCGAT | 1 cut(s) | 154 |
| BtgI | CCRYGG | 1 cut(s) | 350 |
| BtsCI | GGATG | 2 cut(s) | 117, 417 |
| Cac8I | GCNNGC | 1 cut(s) | 211 |
| Cfr42I | CCGCGG | 1 cut(s) | 353 |
| ClaI | ATCGAT | 1 cut(s) | 154 |
| CseI | GACGC | 1 cut(s) | 197 |
| CviAII | CATG | 1 cut(s) | 122 |
| CviJI | RGCY | 7 cut(s) | 84, 171, 209, 389, 455, 463, 477 |
| CviKI_1 | RGCY | 7 cut(s) | 84, 171, 209, 389, 455, 463, 477 |
| DpnI | GATC | 6 cut(s) | 153, 157, 219, 336, 360, 501 |
| DpnII | GATC | 6 cut(s) | 151, 155, 217, 334, 358, 499 |
| DraI | TTTAAA | 1 cut(s) | 184 |
| Eco130I | CCWWGG | 2 cut(s) | 62, 326 |
| EcoT14I | CCWWGG | 2 cut(s) | 62, 326 |
| ErhI | CCWWGG | 2 cut(s) | 62, 326 |
| FaeI | CATG | 1 cut(s) | 125 |
| FaiI | YATR | 7 cut(s) | 46, 123, 168, 333, 345, 357, 386 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 68, 100 |
| FatI | CATG | 1 cut(s) | 121 |
| Fnu4HI | GCNGC | 3 cut(s) | 415, 453, 475 |
| FokI | GGATG | 2 cut(s) | 104, 404 |
| Fsp4HI | GCNGC | 3 cut(s) | 415, 453, 475 |
| FspBI | CTAG | 1 cut(s) | 327 |
| GluI | GCNGC | 3 cut(s) | 415, 453, 475 |
| HapII | CCGG | 1 cut(s) | 496 |
| HgaI | GACGC | 1 cut(s) | 197 |
| Hin1II | CATG | 1 cut(s) | 125 |
| HincII | GTYRAC | 1 cut(s) | 438 |
| HindII | GTYRAC | 1 cut(s) | 438 |
| HinfI | GANTC | 3 cut(s) | 194, 223, 445 |
| HpaI | GTTAAC | 1 cut(s) | 438 |
| HpaII | CCGG | 1 cut(s) | 496 |
| HphI | GGTGA | 1 cut(s) | 122 |
| Hpy166II | GTNNAC | 2 cut(s) | 127, 438 |
| Hpy188I | TCNGA | 3 cut(s) | 222, 228, 363 |
| Hpy8I | GTNNAC | 2 cut(s) | 127, 438 |
| Hpy99I | CGWCG | 1 cut(s) | 134 |
| HpyAV | CCTTC | 3 cut(s) | 74, 230, 312 |
| HpyCH4III | ACNGT | 1 cut(s) | 383 |
| HpyCH4IV | ACGT | 5 cut(s) | 48, 103, 129, 179, 431 |
| HpyCH4V | TGCA | 3 cut(s) | 200, 213, 255 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 197, 206 |
| HpySE526I | ACGT | 5 cut(s) | 48, 103, 129, 179, 431 |
| Hsp92II | CATG | 1 cut(s) | 125 |
| KspAI | GTTAAC | 1 cut(s) | 438 |
| KspI | CCGCGG | 1 cut(s) | 353 |
| Kzo9I | GATC | 6 cut(s) | 151, 155, 217, 334, 358, 499 |
| LpnPI | CCDG | 2 cut(s) | 445, 491 |
| Lsp1109I | GCAGC | 3 cut(s) | 426, 464, 486 |
| LweI | GCATC | 1 cut(s) | 426 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MaeII | ACGT | 5 cut(s) | 48, 103, 129, 179, 431 |
| MaeIII | GTNAC | 1 cut(s) | 175 |
| MalI | GATC | 6 cut(s) | 153, 157, 219, 336, 360, 501 |
| MboI | GATC | 6 cut(s) | 151, 155, 217, 334, 358, 499 |
| MboII | GAAGA | 2 cut(s) | 88, 494 |
| MflI | RGATCY | 2 cut(s) | 217, 499 |
| MluCI | AATT | 3 cut(s) | 250, 307, 317 |
| MmeI | TCCRAC | 2 cut(s) | 251, 445 |
| MnlI | CCTC | 1 cut(s) | 324 |
| MseI | TTAA | 3 cut(s) | 183, 282, 437 |
| MslI | CAYNNNNRTG | 1 cut(s) | 122 |
| MspA1I | CMGCKG | 1 cut(s) | 352 |
| MspI | CCGG | 1 cut(s) | 496 |
| MspR9I | CCNGG | 1 cut(s) | 497 |
| MvnI | CGCG | 1 cut(s) | 352 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 197, 206 |
| NciI | CCSGG | 1 cut(s) | 497 |
| NdeII | GATC | 6 cut(s) | 151, 155, 217, 334, 358, 499 |
| NlaIII | CATG | 1 cut(s) | 125 |
| NlaIV | GGNNCC | 1 cut(s) | 219 |
| NmuCI | GTSAC | 1 cut(s) | 175 |
| PfeI | GAWTC | 3 cut(s) | 194, 223, 445 |
| PkrI | GCNGC | 3 cut(s) | 416, 454, 476 |
| Ppu21I | YACGTR | 1 cut(s) | 49 |
| Psp1406I | AACGTT | 2 cut(s) | 103, 431 |
| PspN4I | GGNNCC | 1 cut(s) | 219 |
| PsuI | RGATCY | 2 cut(s) | 217, 499 |
| RseI | CAYNNNNRTG | 1 cut(s) | 122 |
| SacII | CCGCGG | 1 cut(s) | 353 |
| SaqAI | TTAA | 3 cut(s) | 183, 282, 437 |
| SatI | GCNGC | 3 cut(s) | 415, 453, 475 |
| Sau3AI | GATC | 6 cut(s) | 151, 155, 217, 334, 358, 499 |
| ScrFI | CCNGG | 1 cut(s) | 497 |
| SfaNI | GCATC | 1 cut(s) | 426 |
| Sfr303I | CCGCGG | 1 cut(s) | 353 |
| SgrBI | CCGCGG | 1 cut(s) | 353 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 122 |
| Sse9I | AATT | 3 cut(s) | 250, 307, 317 |
| SsiI | CCGC | 3 cut(s) | 338, 350, 352 |
| SspMI | CTAG | 1 cut(s) | 327 |
| StyD4I | CCNGG | 1 cut(s) | 495 |
| StyI | CCWWGG | 2 cut(s) | 62, 326 |
| TaaI | ACNGT | 1 cut(s) | 383 |
| TaiI | ACGT | 5 cut(s) | 51, 106, 132, 182, 434 |
| TaqI | TCGA | 4 cut(s) | 24, 154, 448, 490 |
| TasI | AATT | 3 cut(s) | 250, 307, 317 |
| TfiI | GAWTC | 3 cut(s) | 194, 223, 445 |
| Tru1I | TTAA | 3 cut(s) | 183, 282, 437 |
| Tru9I | TTAA | 3 cut(s) | 183, 282, 437 |
| TseFI | GTSAC | 1 cut(s) | 175 |
| TseI | GCWGC | 3 cut(s) | 414, 452, 474 |
| Tsp45I | GTSAC | 1 cut(s) | 175 |
| TspGWI | ACGGA | 1 cut(s) | 455 |
| XapI | RAATTY | 1 cut(s) | 307 |
| XmaJI | CCTAGG | 1 cut(s) | 326 |
| XspI | CTAG | 1 cut(s) | 327 |