AT5G53720

positive regulation of 3'-UTR-mediated mRNA stabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0019142
Physical Location & Seq
Forward (+)
21806622 .. 21807012
391 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G53720.1

Sequence Viewer

Length: 303 bp
ATGTCTCACCCAAACGATAGAGAAACAAAGATATATGTGGCAGGTTTGCCTTGGATTACAAGAACCGAAGGTCTCATAAGTTACTTCGAACGATTTGGAGAAATCGTTTATGCTAAAGTAGTTTGTGATGGAGCAACACAAAGATCAAAGGGATTTGGTTTTGTCACGTTTAGAGAAGTTGAATCTGCAACGAGAGCATGCGAGAATCCAAATCACACCATAGACGGACGAACAGTCAATTGCAAACTTGCTTATCTTGGTGCTAGGGTTCACAATTACCAACCAAACCAATACGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000375 GO:0000377 GO:0000380 GO:0000381 GO:0000398 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003197 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003730 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0008285 GO:0008380 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0010948 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0016604 GO:0016607 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0022603 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0031570 GO:0031571 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035556 GO:0035925 GO:0036002 GO:0040012 GO:0042127 GO:0042770 GO:0042772 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045786 GO:0045787 GO:0045844 GO:0045930 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0051726 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060485 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0070013 GO:0070935 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072358 GO:0072359 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903047 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

100

Amino Acids

11.38

Weight (kDa)

8.49

Isoelectric Point (pI)

25.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 11 - 78 1.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11412 AT5G53680 AT5G53720
malus_domestica MD07G1298100.v1.1
prunus_persica Prupe.2G197200_v2.0.a1 Prupe.2G318000_v2.0.a1 Prupe.2G318000_v2.0.a1
pyrus_communis pycom07g27060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 182
AhdI GACNNNNNGTC 1 cut(s) 233
Alw26I GTCTC 2 cut(s) 9, 77
AsuII TTCGAA 1 cut(s) 87
BccI CCATC 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 9, 77
BfaI CTAG 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 32
BmeRI GACNNNNNGTC 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
BseDI CCNNGG 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 9, 77
Bso31I GGTCTC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 87
Bsp143I GATC 1 cut(s) 143
BspMI ACCTGC 1 cut(s) 32
BspT104I TTCGAA 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 235, 296
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 146
BstMAI GTCTC 2 cut(s) 9, 77
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 201
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 199
CviAII CATG 1 cut(s) 198
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
DriI GACNNNNNGTC 1 cut(s) 233
Eam1105I GACNNNNNGTC 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 1 cut(s) 201
FaiI YATR 6 cut(s) 34, 36, 77, 111, 199, 221
FatI CATG 1 cut(s) 197
FspBI CTAG 1 cut(s) 264
Hin1II CATG 1 cut(s) 201
HinfI GANTC 2 cut(s) 182, 205
Hpy166II GTNNAC 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 235, 296
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 188, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 201
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 1 cut(s) 27
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 80, 163
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MfeI CAATTG 1 cut(s) 238
MluCI AATT 2 cut(s) 238, 274
MseI TTAA 1 cut(s) 301
MunI CAATTG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 1 cut(s) 143
NlaIII CATG 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 1 cut(s) 201
NspV TTCGAA 1 cut(s) 87
PaeI GCATGC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 182, 205
SaqAI TTAA 1 cut(s) 301
Sau3AI GATC 1 cut(s) 143
SetI ASST 3 cut(s) 46, 73, 170
SfuI TTCGAA 1 cut(s) 87
SphI GCATGC 1 cut(s) 201
Sse9I AATT 2 cut(s) 238, 274
SspMI CTAG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 2 cut(s) 235, 296
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 238, 274
TfiI GAWTC 2 cut(s) 182, 205
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 240
XceI RCATGY 1 cut(s) 201
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.