Prupe.2G318000_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0019142
Physical Location & Seq
Forward (+)
29758020 .. 29760890
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G318000.1

Sequence Viewer

Length: 783 bp
ATGGTGAGCTCCTCAAACTCAAACAGTGGCACACATGTACAATTCGGTGATACAAGTCACACCAAGATATTTGTGGGTGGATTGCCATGGGAGACTCAAAGAGACACCATGAAACGCTATTTCGAGCAGTTCGGGGAGATCCTAGAGGCCGTTGTCATCACTGACAAAATCACAGCAAGATCAAAAGGCTATGGTTTTGTAACGTTCAAGGATCCAGAAGCAGCAGGGAGAGCTTGTGAAAATCCTAATCCTATCATTGATGGAAGGAGGGCAAATTGTAATCTTGCAGCCCTAGGAGCCCAGAAGAATCATTCAGCCACTCCTCAACCTCATGAACGTGAAACTGAGGAGGGAATGAAGAAATCCAGAGCATCATCCAGACCCTTTATCAACACAACCTCTACGTATTTATATTTCCATCAACACAACCCCCAATATGCATTCCCCTATTATTCTGCTTACGGATATCCAGTTTACCAGCAGGACAACTATGCAATGAGTTATAATTACAATGGATATGGTGGTGGCGGCGGTGGTCGGGGCCAACACCACTGCTACCCTAACTCTAGTAATGCTGCTGGAGGTCCTGGAGGGTATCATCCGTTTTATTTCTATTCTCCATCACCTATGATGATTCTTGTACAGCAGCAGCAGCCACAGCAACGGGGCCCAACAACTTCCAACGCCAAACTAGAACCAACGGCCTCCTCACACACACTCACACTCACAGGGAAACAGCAACAGCATCCCCTCAGACAAGATCCAACAAGAAGAAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0006950 GO:0006974 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010830 GO:0010831 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0033554 GO:0034248 GO:0034249 GO:0035925 GO:0036002 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0048024 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097157 GO:0097159 GO:1901363 GO:1901861 GO:1901863 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1903311 GO:1903312 GO:1903313 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

261

Amino Acids

28.99

Weight (kDa)

9.23

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11412 AT5G53680 AT5G53720
malus_domestica MD07G1298100.v1.1
prunus_persica Prupe.2G197200_v2.0.a1 Prupe.2G318000_v2.0.a1 Prupe.2G318000_v2.0.a1
pyrus_communis pycom07g27060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AciI CCGC 2 cut(s) 528, 531
AclI AACGTT 1 cut(s) 203
AclWI GGATC 4 cut(s) 133, 206, 219, 755
AfaI GTAC 2 cut(s) 39, 642
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 586
AluBI AGCT 2 cut(s) 9, 233
AluI AGCT 2 cut(s) 9, 233
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 86, 96
AlwI GGATC 4 cut(s) 133, 206, 219, 755
AoxI GGCC 4 cut(s) 147, 541, 667, 702
ApaI GGGCCC 1 cut(s) 671
ApeKI GCWGC 6 cut(s) 221, 287, 575, 646, 649, 652
AspA2I CCTAGG 1 cut(s) 292
AspS9I GGNCC 4 cut(s) 541, 584, 667, 668
AsuHPI GGTGA 3 cut(s) 16, 59, 615
AvaII GGWCC 1 cut(s) 584
AvrII CCTAGG 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 671
BamHI GGATCC 1 cut(s) 211
BanII GRGCYC 3 cut(s) 11, 301, 671
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 6 cut(s) 233, 299, 562, 658, 661, 664
BccI CCATC 3 cut(s) 254, 426, 628
BceAI ACGGC 2 cut(s) 134, 717
BciT130I CCWGG 1 cut(s) 588
BcoDI GTCTC 2 cut(s) 86, 96
BfaI CTAG 4 cut(s) 143, 293, 567, 692
BisI GCNGC 7 cut(s) 222, 288, 529, 576, 647, 650, 653
BlnI CCTAGG 1 cut(s) 292
BlsI GCNGC 7 cut(s) 223, 289, 530, 577, 648, 651, 654
Bme1390I CCNGG 1 cut(s) 588
Bme18I GGWCC 1 cut(s) 584
BmgT120I GGNCC 4 cut(s) 541, 584, 667, 668
BmiI GGNNCC 5 cut(s) 213, 298, 542, 668, 669
BmrFI CCNGG 1 cut(s) 588
BmsI GCATC 2 cut(s) 380, 754
BpmI CTGGAG 2 cut(s) 600, 609
BsaAI YACGTR 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 86, 292
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bse1I ACTGG 1 cut(s) 470
Bse3DI GCAATG 1 cut(s) 501
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 86, 292
BseGI GGATG 3 cut(s) 374, 598, 745
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 2 cut(s) 336, 766
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 3 cut(s) 312, 362, 697
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 6 cut(s) 233, 299, 562, 658, 661, 664
BshFI GGCC 4 cut(s) 149, 543, 669, 704
BsiHKAI GWGCWC 1 cut(s) 11
BsmAI GTCTC 2 cut(s) 86, 96
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 4 cut(s) 149, 543, 669, 704
Bsp120I GGGCCC 1 cut(s) 667
Bsp1286I GDGCHC 3 cut(s) 11, 301, 671
Bsp1407I TGTACA 2 cut(s) 37, 640
Bsp143I GATC 4 cut(s) 138, 179, 211, 760
Bsp19I CCATGG 1 cut(s) 86
BspACI CCGC 2 cut(s) 528, 531
BspANI GGCC 4 cut(s) 149, 543, 669, 704
BspCNI CTCAG 2 cut(s) 337, 765
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 5 cut(s) 213, 298, 542, 668, 669
BspPI GGATC 4 cut(s) 133, 206, 219, 755
BsrDI GCAATG 1 cut(s) 501
BsrGI TGTACA 2 cut(s) 37, 640
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 86, 292
BssMI GATC 4 cut(s) 138, 179, 211, 760
BssT1I CCWWGG 2 cut(s) 86, 292
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 1 cut(s) 26
BstAUI TGTACA 2 cut(s) 37, 640
BstBAI YACGTR 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 345, 752
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 3 cut(s) 374, 598, 745
BstKTI GATC 4 cut(s) 141, 182, 214, 763
BstMAI GTCTC 2 cut(s) 86, 96
BstMBI GATC 4 cut(s) 138, 179, 211, 760
BstMWI GCNNNNNNNGC 4 cut(s) 230, 296, 652, 658
BstNI CCWGG 1 cut(s) 588
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 586
BstSLI GKGCMC 1 cut(s) 671
BstSNI TACGTA 1 cut(s) 405
BstV1I GCAGC 6 cut(s) 233, 299, 562, 658, 661, 664
BstX2I RGATCY 3 cut(s) 138, 211, 760
BstYI RGATCY 3 cut(s) 138, 211, 760
BsuRI GGCC 4 cut(s) 149, 543, 669, 704
BtgI CCRYGG 1 cut(s) 86
BtsCI GGATG 3 cut(s) 374, 598, 745
BtsI GCAGTG 1 cut(s) 550
BtsIMutI CAGTG 3 cut(s) 31, 159, 550
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 4 cut(s) 541, 584, 667, 668
Csp6I GTAC 2 cut(s) 38, 641
CviAII CATG 4 cut(s) 35, 87, 109, 332
CviQI GTAC 2 cut(s) 38, 641
DdeI CTNAG 2 cut(s) 345, 752
DpnI GATC 4 cut(s) 140, 181, 213, 762
DpnII GATC 4 cut(s) 138, 179, 211, 760
Ecl136II GAGCTC 1 cut(s) 9
Eco105I TACGTA 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 86, 292
Eco24I GRGCYC 3 cut(s) 11, 301, 671
Eco32I GATATC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 584
Eco53kI GAGCTC 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 9
EcoO109I RGGNCCY 2 cut(s) 584, 667
EcoRII CCWGG 1 cut(s) 586
EcoRV GATATC 1 cut(s) 467
EcoT14I CCWWGG 2 cut(s) 86, 292
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 3 cut(s) 11, 301, 671
ErhI CCWWGG 2 cut(s) 86, 292
FaeI CATG 4 cut(s) 38, 90, 112, 335
FatI CATG 4 cut(s) 34, 86, 108, 331
Fnu4HI GCNGC 7 cut(s) 222, 288, 529, 576, 647, 650, 653
FokI GGATG 3 cut(s) 361, 585, 732
FriOI GRGCYC 3 cut(s) 11, 301, 671
Fsp4HI GCNGC 7 cut(s) 222, 288, 529, 576, 647, 650, 653
FspBI CTAG 4 cut(s) 143, 293, 567, 692
GluI GCNGC 7 cut(s) 222, 288, 529, 576, 647, 650, 653
GsuI CTGGAG 2 cut(s) 600, 609
HaeIII GGCC 4 cut(s) 149, 543, 669, 704
Hin1II CATG 4 cut(s) 38, 90, 112, 335
HinfI GANTC 3 cut(s) 94, 307, 634
HphI GGTGA 3 cut(s) 16, 59, 615
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 1 cut(s) 755
Hpy188III TCNNGA 4 cut(s) 215, 332, 366, 378
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 3 cut(s) 203, 337, 404
HpyCH4V TGCA 3 cut(s) 287, 440, 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 296, 652, 658
HpyF3I CTNAG 2 cut(s) 345, 752
HpySE526I ACGT 3 cut(s) 203, 337, 404
Hsp92II CATG 4 cut(s) 38, 90, 112, 335
Kzo9I GATC 4 cut(s) 138, 179, 211, 760
LmnI GCTCC 2 cut(s) 14, 296
Lsp1109I GCAGC 6 cut(s) 233, 299, 562, 658, 661, 664
LweI GCATC 2 cut(s) 380, 754
MaeI CTAG 4 cut(s) 143, 293, 567, 692
MaeII ACGT 3 cut(s) 203, 337, 404
MaeIII GTNAC 2 cut(s) 56, 199
MalI GATC 4 cut(s) 140, 181, 213, 762
MboI GATC 4 cut(s) 138, 179, 211, 760
MboII GAAGA 3 cut(s) 316, 370, 783
MflI RGATCY 3 cut(s) 138, 211, 760
MhlI GDGCHC 3 cut(s) 11, 301, 671
MluCI AATT 3 cut(s) 41, 274, 505
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 705
Mph1103I ATGCAT 1 cut(s) 442
MslI CAYNNNNRTG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 1 cut(s) 588
MwoI GCNNNNNNNGC 4 cut(s) 230, 296, 652, 658
NcoI CCATGG 1 cut(s) 86
NdeII GATC 4 cut(s) 138, 179, 211, 760
NlaIII CATG 4 cut(s) 38, 90, 112, 335
NlaIV GGNNCC 5 cut(s) 213, 298, 542, 668, 669
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 38
PagI TCATGA 1 cut(s) 331
PciI ACATGT 1 cut(s) 34
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 307, 634
PfoI TCCNGGA 1 cut(s) 586
PkrI GCNGC 7 cut(s) 223, 289, 530, 577, 648, 651, 654
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 405
PpuMI RGGWCCY 1 cut(s) 584
PscI ACATGT 1 cut(s) 34
PsiI TTATAA 1 cut(s) 504
Psp124BI GAGCTC 1 cut(s) 11
Psp1406I AACGTT 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 586
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 5 cut(s) 213, 298, 542, 668, 669
PspOMI GGGCCC 1 cut(s) 667
PspPI GGNCC 4 cut(s) 541, 584, 667, 668
PspPPI RGGWCCY 1 cut(s) 584
PsuI RGATCY 3 cut(s) 138, 211, 760
RsaI GTAC 2 cut(s) 39, 642
RsaNI GTAC 2 cut(s) 38, 641
RseI CAYNNNNRTG 1 cut(s) 336
SacI GAGCTC 1 cut(s) 11
SatI GCNGC 7 cut(s) 222, 288, 529, 576, 647, 650, 653
Sau3AI GATC 4 cut(s) 138, 179, 211, 760
Sau96I GGNCC 4 cut(s) 541, 584, 667, 668
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 588
SduI GDGCHC 3 cut(s) 11, 301, 671
SetI ASST 9 cut(s) 11, 206, 235, 331, 340, 401, 407, 586, 628
SfaNI GCATC 2 cut(s) 380, 754
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 336
SnaBI TACGTA 1 cut(s) 405
Sse9I AATT 3 cut(s) 41, 274, 505
SsiI CCGC 2 cut(s) 528, 531
SspMI CTAG 4 cut(s) 143, 293, 567, 692
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 586
StyI CCWWGG 2 cut(s) 86, 292
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 3 cut(s) 206, 340, 407
TaqI TCGA 1 cut(s) 123
TasI AATT 3 cut(s) 41, 274, 505
TatI WGTACW 2 cut(s) 37, 640
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 2 cut(s) 307, 634
TscAI CASTG 3 cut(s) 31, 166, 557
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 6 cut(s) 221, 287, 575, 646, 649, 652
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 3 cut(s) 125, 348, 371
TspGWI ACGGA 2 cut(s) 477, 591
TspRI CASTG 3 cut(s) 31, 166, 557
VpaK11BI GGWCC 1 cut(s) 584
XceI RCATGY 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XmaJI CCTAGG 1 cut(s) 292
XspI CTAG 4 cut(s) 143, 293, 567, 692
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.