AT5G11680

female pronucleus assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016205
Physical Location & Seq
Forward (+)
3758809 .. 3760913
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11680.1

Sequence Viewer

Length: 624 bp
ATGGCGCTAAACCCTCAATTACTACCCAATGGGATGCCTGTTCCCTTTGTTAATGAAATGTTCGTCCTAGTCCGAGATGGTGTTGAGTTTGAAGTCGACAAGATCCCTGGAGGGCATGGAGGTCATGTTAAGGCCAAGGGGGTGATTTACTTGTCTAATATACGGATGGTCTTTGTTTCAAGCAAGCCTGTTGACAACTTTGTTGCTTTTGACATGCCCCTGCTTTACATCCATGCCGAGAAATTTAATCAGCCAATATTTCACTGCAACAATATTGCTGGACAAGTGGAGCCTGTGGTGCCAGAAAATGAGCATAGAGCTCTATATTCAACACACAGTTTCAAGATCCTATTTAAGGAAGGTGGTTGTGGGACATTTGTTCCTCTCTTCTTGAATCTCATATCATCAGTGAGACAATACAACAGACAAATGCAACAAGCAGCAGAAGCAGCAGCGGCAGCTCCTCATGTTGATCCTCTTCAAGCCGCTCAGACACCTGTGGACGAAATGATGAGACATGCGTACGTGGACCCTAATGATCCAACGAGGATATATCTGCAACAGCCATCAGGGGAATCTCAGTTGAGGCGTAGAGCTTACCATTCGGGTGCGGCGGAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.11

Weight (kDa)

6.35

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11680
fragaria_vesca FvH4_4g21930
malus_domestica MD13G1135700.v1.1 MD16G1131300.v1.1
prunus_persica Prupe.1G209600_v2.0.a1
pyrus_communis pycom16g11570
rosa_chinensis RchiOBHm_Chr4g0428141
rosa_laevigata RLG00000007176
rosa_multiflora Rmu_sc0004940.1_g000010 Rmu_sc0009599.1_g000010
rosa_roxburghii Rroxscaffold_5G00369870
rosa_rugosa Rorug04G0222900
rosa_samantha Rh4BG285700 Rh4CG301000
rosa_wichuraiana Rw4G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 488
AccI GTMKAC 1 cut(s) 96
AciI CCGC 4 cut(s) 455, 486, 611, 614
AclWI GGATC 4 cut(s) 97, 340, 467, 533
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 6 cut(s) 92, 180, 330, 343, 394, 482
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 3 cut(s) 320, 461, 596
AluI AGCT 3 cut(s) 320, 461, 596
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 2 cut(s) 406, 508
AlwI GGATC 4 cut(s) 97, 340, 467, 533
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 4 cut(s) 440, 449, 452, 458
ApoI RAATTY 1 cut(s) 242
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 529
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 529
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 4 cut(s) 452, 461, 464, 470
BccI CCATC 3 cut(s) 71, 160, 574
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 406, 508
BfaI CTAG 1 cut(s) 68
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 7 cut(s) 441, 450, 453, 456, 459, 486, 612
BlsI GCNGC 7 cut(s) 442, 451, 454, 457, 460, 487, 613
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 3 cut(s) 291, 300, 531
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 526
BsaJI CCNNGG 2 cut(s) 106, 135
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 106, 135
BseGI GGATG 3 cut(s) 39, 171, 228
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 503, 593
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 4 cut(s) 452, 461, 464, 470
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 322
BsiWI CGTACG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 2 cut(s) 406, 508
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 4 cut(s) 102, 345, 472, 538
BspACI CCGC 4 cut(s) 455, 486, 611, 614
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 502, 592
BspLI GGNNCC 3 cut(s) 291, 300, 531
BspPI GGATC 4 cut(s) 97, 340, 467, 533
BspT107I GGYRCC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 488
BssECI CCNNGG 2 cut(s) 106, 135
BssMI GATC 4 cut(s) 102, 345, 472, 538
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 2 cut(s) 392, 483
BstBAI YACGTR 1 cut(s) 526
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 489, 579
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 3 cut(s) 39, 171, 228
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 105, 348, 475, 541
BstMAI GTCTC 2 cut(s) 406, 508
BstMBI GATC 4 cut(s) 102, 345, 472, 538
BstMWI GCNNNNNNNGC 5 cut(s) 298, 446, 449, 455, 458
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 2 cut(s) 217, 521
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 4 cut(s) 452, 461, 464, 470
BstX2I RGATCY 2 cut(s) 102, 345
BstYI RGATCY 2 cut(s) 102, 345
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 3 cut(s) 39, 171, 228
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 262, 414
Cac8I GCNNGC 1 cut(s) 185
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 529
Csp6I GTAC 1 cut(s) 523
CviAII CATG 6 cut(s) 116, 125, 214, 233, 467, 518
CviJI RGCY 9 cut(s) 134, 187, 253, 292, 320, 461, 485, 565, 596
CviKI_1 RGCY 9 cut(s) 134, 187, 253, 292, 320, 461, 485, 565, 596
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 2 cut(s) 489, 579
DpnI GATC 4 cut(s) 104, 347, 474, 540
DpnII GATC 4 cut(s) 102, 345, 472, 538
Eam1104I CTCTTC 2 cut(s) 392, 483
EarI CTCTTC 2 cut(s) 392, 483
Ecl136II GAGCTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 320
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 6 cut(s) 119, 128, 217, 236, 470, 521
FaqI GGGAC 1 cut(s) 385
FatI CATG 6 cut(s) 115, 124, 213, 232, 466, 517
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 7 cut(s) 441, 450, 453, 456, 459, 486, 612
FokI GGATG 3 cut(s) 46, 178, 215
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 7 cut(s) 441, 450, 453, 456, 459, 486, 612
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 6
GluI GCNGC 7 cut(s) 441, 450, 453, 456, 459, 486, 612
GsuI CTGGAG 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 134
HhaI GCGC 1 cut(s) 7
Hin1II CATG 6 cut(s) 119, 128, 217, 236, 470, 521
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 2 cut(s) 97, 193
HindII GTYRAC 2 cut(s) 97, 193
HinfI GANTC 2 cut(s) 394, 575
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 4 cut(s) 97, 193, 502, 529
Hpy188I TCNGA 2 cut(s) 74, 492
Hpy188III TCNNGA 2 cut(s) 343, 391
Hpy8I GTNNAC 4 cut(s) 97, 193, 502, 529
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 3 cut(s) 267, 433, 559
HpyF10VI GCNNNNNNNGC 5 cut(s) 298, 446, 449, 455, 458
HpyF3I CTNAG 2 cut(s) 489, 579
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 6 cut(s) 119, 128, 217, 236, 470, 521
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 4 cut(s) 102, 345, 472, 538
LmnI GCTCC 2 cut(s) 289, 466
Lsp1109I GCAGC 4 cut(s) 452, 461, 464, 470
LweI GCATC 1 cut(s) 24
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 525
MalI GATC 4 cut(s) 104, 347, 474, 540
MbiI CCGCTC 1 cut(s) 488
MboI GATC 4 cut(s) 102, 345, 472, 538
MboII GAAGA 2 cut(s) 379, 470
MflI RGATCY 2 cut(s) 102, 345
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 2 cut(s) 17, 242
MmeI TCCRAC 1 cut(s) 566
MnlI CCTC 8 cut(s) 24, 104, 113, 393, 474, 486, 540, 579
MseI TTAA 4 cut(s) 51, 129, 246, 354
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 5 cut(s) 298, 446, 449, 455, 458
NdeII GATC 4 cut(s) 102, 345, 472, 538
NlaIII CATG 6 cut(s) 119, 128, 217, 236, 470, 521
NlaIV GGNNCC 3 cut(s) 291, 300, 531
NmeAIII GCCGAG 1 cut(s) 262
NspI RCATGY 2 cut(s) 217, 521
PfeI GAWTC 2 cut(s) 394, 575
Pfl23II CGTACG 1 cut(s) 522
PkrI GCNGC 7 cut(s) 442, 451, 454, 457, 460, 487, 613
Ppu21I YACGTR 1 cut(s) 526
Psp124BI GAGCTC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspLI CGTACG 1 cut(s) 522
PspN4I GGNNCC 3 cut(s) 291, 300, 531
PspPI GGNCC 1 cut(s) 529
PsuI RGATCY 2 cut(s) 102, 345
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 1 cut(s) 322
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 51, 129, 246, 354
SatI GCNGC 7 cut(s) 441, 450, 453, 456, 459, 486, 612
Sau3AI GATC 4 cut(s) 102, 345, 472, 538
Sau96I GGNCC 1 cut(s) 529
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 322
SetI ASST 7 cut(s) 124, 322, 364, 463, 499, 528, 598
SfaNI GCATC 1 cut(s) 24
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 606
Sse9I AATT 2 cut(s) 17, 242
SsiI CCGC 4 cut(s) 455, 486, 611, 614
SspI AATATT 2 cut(s) 258, 274
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 528
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 17, 242
TauI GCSGC 3 cut(s) 458, 488, 614
TfiI GAWTC 2 cut(s) 394, 575
Tru1I TTAA 4 cut(s) 51, 129, 246, 354
Tru9I TTAA 4 cut(s) 51, 129, 246, 354
TscAI CASTG 2 cut(s) 269, 414
TseI GCWGC 4 cut(s) 440, 449, 452, 458
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 2 cut(s) 269, 414
VpaK11BI GGWCC 1 cut(s) 529
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 1 cut(s) 242
XceI RCATGY 2 cut(s) 217, 521
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.