Prupe.1G209600_v2.0.a1

female pronucleus assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016205
Physical Location & Seq
Forward (+)
22356557 .. 22359957
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G209600.1

Sequence Viewer

Length: 615 bp
ATGGCTGTGAACCCTCAACTGTTCCCTAATGGCATGCCTGTTCCTTTTGTGAACGAGATGTTCGTTCTCGCCAGAGACGGCGTCGAGTTCGAGGTCGATAAGATTCCTGGATCTGATGGTGGTCGTCTTAAAGCAAAGGGGACAATCTACTTGTCAAATATACGCATGGTCTTTGTTTCAAACAAGCCTGTTGGAAACTTTATTGCGTTTGATATGCCCCTGCTTTATGTCCATGGTGAAAAGTTCAATCAACCAATTTTTTTCTGCAACAACATTTCTGGTCAAGTGGAGCCTGTAGTTCCAGAAAATCAGCATGGGGCTCTTTATTCCACTCACTCATTCAAGATTTTGTTCAAAGAAGGGGGTTGTGGAACGTTTGTTCCGCTTTTTTTCAACTTGATCTCCTCAGTGAGACAATATAATCAACATCAACACCCCAATGCAGGACCACAGCCTCATGTGGATCCTTTACAGGCAGCGCAAACTCCTGTTGATGAGATGATGAGACATGCGTATGTCGATCCTAATGATCCAACGAGGATCTTCTTGCAGCAGCCTACTCCAGAGTCTCAGCTGAGGCGGCGCACATACCAGTCACAGCCCGCAGGACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.93

Weight (kDa)

6.65

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11680
fragaria_vesca FvH4_4g21930
malus_domestica MD13G1135700.v1.1 MD16G1131300.v1.1
prunus_persica Prupe.1G209600_v2.0.a1
pyrus_communis pycom16g11570
rosa_chinensis RchiOBHm_Chr4g0428141
rosa_laevigata RLG00000007176
rosa_multiflora Rmu_sc0004940.1_g000010 Rmu_sc0009599.1_g000010
rosa_roxburghii Rroxscaffold_5G00369870
rosa_rugosa Rorug04G0222900
rosa_samantha Rh4BG285700 Rh4CG301000
rosa_wichuraiana Rw4G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 383, 580, 603
AclI AACGTT 1 cut(s) 374
AclWI GGATC 6 cut(s) 118, 458, 471, 515, 524, 548
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 5 cut(s) 180, 247, 343, 355, 394
AjnI CCWGG 1 cut(s) 106
AloI GAACNNNNNNTCC 4 cut(s) 363, 364, 395, 396
AluBI AGCT 1 cut(s) 574
AluI AGCT 1 cut(s) 574
Alw26I GTCTC 4 cut(s) 69, 406, 499, 573
AlwI GGATC 6 cut(s) 118, 458, 471, 515, 524, 548
ApeKI GCWGC 3 cut(s) 476, 550, 553
AspLEI GCGC 2 cut(s) 481, 585
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 446
BamHI GGATCC 1 cut(s) 463
BanII GRGCYC 1 cut(s) 322
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 3 cut(s) 488, 562, 565
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 4 cut(s) 69, 406, 499, 573
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 4 cut(s) 477, 551, 554, 581
BlsI GCNGC 4 cut(s) 478, 552, 555, 582
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 2 cut(s) 291, 465
BmrFI CCNGG 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 1 cut(s) 592
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 3 cut(s) 420, 566, 584
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 1 cut(s) 394
BseXI GCAGC 3 cut(s) 488, 562, 565
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 4 cut(s) 69, 406, 499, 573
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 6 cut(s) 110, 399, 463, 520, 529, 540
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 3 cut(s) 383, 580, 603
BspCNI CTCAG 3 cut(s) 419, 567, 583
BspLI GGNNCC 2 cut(s) 291, 465
BspPI GGATC 6 cut(s) 118, 458, 471, 515, 524, 548
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 6 cut(s) 110, 399, 463, 520, 529, 540
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 21, 612
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 35, 603
BstDEI CTNAG 3 cut(s) 406, 570, 575
BstDSI CCRYGG 1 cut(s) 232
BstHHI GCGC 2 cut(s) 481, 585
BstKTI GATC 6 cut(s) 113, 402, 466, 523, 532, 543
BstMAI GTCTC 4 cut(s) 69, 406, 499, 573
BstMBI GATC 6 cut(s) 110, 399, 463, 520, 529, 540
BstMWI GCNNNNNNNGC 1 cut(s) 580
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 2 cut(s) 37, 512
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 488, 562, 565
BstX2I RGATCY 3 cut(s) 110, 463, 540
BstYI RGATCY 3 cut(s) 110, 463, 540
BtgI CCRYGG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 35, 603
CfoI GCGC 2 cut(s) 481, 585
Cfr13I GGNCC 1 cut(s) 446
CseI GACGC 1 cut(s) 70
CviAII CATG 6 cut(s) 34, 166, 233, 314, 458, 509
CviJI RGCY 8 cut(s) 5, 187, 292, 320, 454, 556, 574, 601
CviKI_1 RGCY 8 cut(s) 5, 187, 292, 320, 454, 556, 574, 601
DdeI CTNAG 3 cut(s) 406, 570, 575
DpnI GATC 6 cut(s) 112, 401, 465, 522, 531, 542
DpnII GATC 6 cut(s) 110, 399, 463, 520, 529, 540
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 6 cut(s) 37, 169, 236, 317, 461, 512
FaqI GGGAC 1 cut(s) 154
FatI CATG 6 cut(s) 33, 165, 232, 313, 457, 508
FauI CCCGC 1 cut(s) 610
Fnu4HI GCNGC 4 cut(s) 477, 551, 554, 581
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 4 cut(s) 477, 551, 554, 581
GlaI GCGC 2 cut(s) 480, 584
GluI GCNGC 4 cut(s) 477, 551, 554, 581
GsuI CTGGAG 1 cut(s) 546
HgaI GACGC 1 cut(s) 70
HhaI GCGC 2 cut(s) 481, 585
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 6 cut(s) 37, 169, 236, 317, 461, 512
Hin6I GCGC 2 cut(s) 479, 583
HinP1I GCGC 2 cut(s) 479, 583
HinfI GANTC 2 cut(s) 103, 566
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 10, 52
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 302, 343, 563
Hpy8I GTNNAC 2 cut(s) 10, 52
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 2 cut(s) 21, 612
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 3 cut(s) 267, 443, 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 580
HpyF3I CTNAG 3 cut(s) 406, 570, 575
HpySE526I ACGT 1 cut(s) 374
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 6 cut(s) 37, 169, 236, 317, 461, 512
HspAI GCGC 2 cut(s) 479, 583
Kzo9I GATC 6 cut(s) 110, 399, 463, 520, 529, 540
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 3 cut(s) 488, 562, 565
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 594
MalI GATC 6 cut(s) 112, 401, 465, 522, 531, 542
MboI GATC 6 cut(s) 110, 399, 463, 520, 529, 540
MboII GAAGA 1 cut(s) 535
MflI RGATCY 3 cut(s) 110, 463, 540
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 1 cut(s) 255
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 2 cut(s) 172, 557
MnlI CCTC 6 cut(s) 24, 85, 415, 465, 531, 570
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 2 cut(s) 438, 513
MspA1I CMGCKG 1 cut(s) 574
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 580
NcoI CCATGG 1 cut(s) 232
NdeII GATC 6 cut(s) 110, 399, 463, 520, 529, 540
NlaIII CATG 6 cut(s) 37, 169, 236, 317, 461, 512
NlaIV GGNNCC 2 cut(s) 291, 465
NmuCI GTSAC 1 cut(s) 594
NspI RCATGY 2 cut(s) 37, 512
PaeI GCATGC 1 cut(s) 37
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 1 cut(s) 103
PflFI GACNNNGTC 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 4 cut(s) 478, 552, 555, 582
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
Psp1406I AACGTT 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 291, 465
PspPI GGNCC 1 cut(s) 446
PsuI RGATCY 3 cut(s) 110, 463, 540
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 438, 513
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 4 cut(s) 477, 551, 554, 581
Sau3AI GATC 6 cut(s) 110, 399, 463, 520, 529, 540
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 322
SetI ASST 3 cut(s) 96, 377, 576
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 2 cut(s) 438, 513
SphI GCATGC 1 cut(s) 37
Sse9I AATT 1 cut(s) 255
SsiI CCGC 3 cut(s) 383, 580, 603
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 21, 612
TaiI ACGT 1 cut(s) 377
TaqI TCGA 4 cut(s) 84, 90, 96, 519
TasI AATT 1 cut(s) 255
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 1 cut(s) 594
TseI GCWGC 3 cut(s) 476, 550, 553
Tsp45I GTSAC 1 cut(s) 594
TspRI CASTG 1 cut(s) 414
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 446
XceI RCATGY 2 cut(s) 37, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.