Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013207

Physical Location & Seq

Genomic Coordinates Reverse (-)

3790708 .. 3793026

Gene Structure 2319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGATGATTACGCGCAACACCGCCACGCGCCTCCCTCTCCTCCTCCAATCTCAACGCGCCGTCGCCGCTGCCTCGGTCTCTCACCTCCACACATCCCTTCCCGCTCTCTCTCCCTCCACATCACCGACTTCCTACACCAGACCTGGTCCTCCTTCGACCTCCCCTCCTCCTCCTGGTCTCTCTAAAGCGGCCGAATTTGTGATCTCCAAGGTCGATGATCTCATGAACTGGGCTCGTACCGGATCGATCTGGCCTATGACCTTTGGTCTCGCTTGCTGCGCCGTCGAAATGATGCATACCGGTGCTGCTCGCTACGATCTCGATCGATTCGGTATCATCTTCAGGCCTAGTCCTCGCCAGTCTGATTGTATGATTGTCGCCGGTACTCTTACCAATAAGATGGCTCCGGCTCTTCGCAAGGTTTATGACCAGATGCCTGAGCCAAGGTGGGTGATTTCAATGGGAAGTTGTGCCAATGGAGGTGGATACTATCACTACTCCTACTCGGTGGTTCGAGGATGTGACAGAATTGTCCCAGTCGACATATACGTCCCGGGGTGCCCACCAACCGCTGAGGCTTTGCTCTATGGACTACTCCAGCTTCAGAAGAAAATCAACAGGCGCAAGGATTTCTTGCATTGGTGGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008270 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Oxidored_q6

Protein Analysis

218

Amino Acids

24.04

Weight (kDa)

9.53

Isoelectric Point (pI)

62.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_q6	PF01058	93 - 202	4.3e-28	NADH ubiquinone oxidoreductase, 20 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11770
fragaria_vesca	FvH4_2g32100
malus_domestica	MD08G1044100.v1.1 MD15G1061400.v1.1
prunus_persica	Prupe.1G414100_v2.0.a1
pyrus_communis	pycom08g03560
rosa_chinensis	RchiOBHm_Chr3g0475351 RchiOBHm_Chr6g0310641
rosa_laevigata	RLG00000010470
rosa_multiflora	Rmu_sc0005386.1_g000005 Rmu_sc0007390.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158390
rosa_rugosa	Rorug06G0381800
rosa_samantha	Rh6AG495800 Rh6BG505300 Rh6CG510900 Rh6DG496700
rosa_wichuraiana	Rw6G043110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	533, 551
AccB1I	GGYRCC	1 cut(s)	561
AccBSI	CCGCTC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	3 cut(s)	16, 31, 60
AciI	CCGC	5 cut(s)	24, 69, 105, 191, 573
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	2 cut(s)	328, 590
AfaI	GTAC	2 cut(s)	241, 388
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgeI	ACCGGT	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	462
AhdI	GACNNNNNGTC	1 cut(s)	267
AjnI	CCWGG	2 cut(s)	145, 175
AluBI	AGCT	1 cut(s)	604
AluI	AGCT	1 cut(s)	604
Alw26I	GTCTC	3 cut(s)	85, 185, 275
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	556
AoxI	GGCC	3 cut(s)	192, 254, 347
ApeKI	GCWGC	3 cut(s)	71, 279, 308
ApoI	RAATTY	1 cut(s)	197
AsiGI	ACCGGT	1 cut(s)	302
AspLEI	GCGC	5 cut(s)	18, 33, 62, 284, 627
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	2 cut(s)	557, 558
AsuHPI	GGTGA	3 cut(s)	77, 117, 466
AvaI	CYCGRG	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	566
BanI	GGYRCC	1 cut(s)	561
BanII	GRGCYC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	576
BbvI	GCAGC	3 cut(s)	58, 266, 295
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	2 cut(s)	47, 269
BciT130I	CCWGG	2 cut(s)	147, 177
BciVI	GTATCC	1 cut(s)	482
BcnI	CCSGG	2 cut(s)	557, 558
BcoDI	GTCTC	3 cut(s)	85, 185, 275
BfaI	CTAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	482
BisI	GCNGC	5 cut(s)	69, 72, 192, 280, 309
BlsI	GCNGC	5 cut(s)	70, 73, 193, 281, 310
Bme1390I	CCNGG	4 cut(s)	147, 177, 557, 558
Bme18I	GGWCC	1 cut(s)	149
BmeRI	GACNNNNNGTC	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	408, 563
BmrFI	CCNGG	4 cut(s)	147, 177, 557, 558
BmrI	ACTGGG	2 cut(s)	241, 533
BmsI	GCATC	2 cut(s)	285, 426
BmuI	ACTGGG	2 cut(s)	241, 533
BpmI	CTGGAG	1 cut(s)	584
Bpu10I	CCTNAGC	2 cut(s)	441, 576
BpuMI	CCSGG	2 cut(s)	557, 558
Bsa29I	ATCGAT	2 cut(s)	248, 328
BsaBI	GATNNNNATC	1 cut(s)	324
BsaI	GGTCTC	3 cut(s)	85, 185, 275
BsaJI	CCNNGG	5 cut(s)	75, 210, 446, 556, 557
BsaWI	WCCGGW	2 cut(s)	242, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	2 cut(s)	302, 383
Bse1I	ACTGG	3 cut(s)	236, 361, 539
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	147, 177
BseCI	ATCGAT	2 cut(s)	248, 328
BseDI	CCNNGG	5 cut(s)	75, 210, 446, 556, 557
BseGI	GGATG	2 cut(s)	95, 527
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	432, 567
BseNI	ACTGG	3 cut(s)	236, 361, 539
BseRI	GAGGAG	4 cut(s)	32, 35, 159, 162
BseSI	GKGCMC	1 cut(s)	566
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	58, 266, 295
Bsh1236I	CGCG	3 cut(s)	16, 31, 60
Bsh1285I	CGRYCG	2 cut(s)	195, 328
BshFI	GGCC	3 cut(s)	194, 256, 349
BshNI	GGYRCC	1 cut(s)	561
BshTI	ACCGGT	1 cut(s)	302
BshVI	ATCGAT	2 cut(s)	248, 328
BsiEI	CGRYCG	2 cut(s)	195, 328
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	5 cut(s)	243, 303, 384, 410, 557
BslFI	GGGAC	2 cut(s)	521, 539
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	3 cut(s)	85, 185, 275
BsmFI	GGGAC	2 cut(s)	521, 539
BsnI	GGCC	3 cut(s)	194, 256, 349
Bso31I	GGTCTC	3 cut(s)	85, 185, 275
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	2 cut(s)	238, 566
Bsp143I	GATC	6 cut(s)	204, 220, 245, 249, 319, 325
BspACI	CCGC	5 cut(s)	24, 69, 105, 191, 573
BspANI	GGCC	3 cut(s)	194, 256, 349
BspCNI	CTCAG	2 cut(s)	433, 568
BspDI	ATCGAT	2 cut(s)	248, 328
BspFNI	CGCG	3 cut(s)	16, 31, 60
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	408, 563
BspPI	GGATC	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	561
BspTNI	GGTCTC	3 cut(s)	85, 185, 275
BsrBI	CCGCTC	1 cut(s)	107
BsrFI	RCCGGY	2 cut(s)	302, 383
BsrI	ACTGG	3 cut(s)	236, 361, 539
BssAI	RCCGGY	2 cut(s)	302, 383
BssECI	CCNNGG	5 cut(s)	75, 210, 446, 556, 557
BssMI	GATC	6 cut(s)	204, 220, 245, 249, 319, 325
BssT1I	CCWWGG	2 cut(s)	210, 446
Bst2UI	CCWGG	2 cut(s)	147, 177
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	277, 313
BstDEI	CTNAG	2 cut(s)	441, 576
BstF5I	GGATG	2 cut(s)	95, 527
BstFNI	CGCG	3 cut(s)	16, 31, 60
BstHHI	GCGC	5 cut(s)	18, 33, 62, 284, 627
BstKTI	GATC	6 cut(s)	207, 223, 248, 252, 322, 328
BstMAI	GTCTC	3 cut(s)	85, 185, 275
BstMBI	GATC	6 cut(s)	204, 220, 245, 249, 319, 325
BstMCI	CGRYCG	2 cut(s)	195, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 281
BstNI	CCWGG	2 cut(s)	147, 177
BstSCI	CCNGG	4 cut(s)	145, 175, 555, 556
BstSLI	GKGCMC	1 cut(s)	566
BstUI	CGCG	3 cut(s)	16, 31, 60
BstV1I	GCAGC	3 cut(s)	58, 266, 295
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstZI	CGGCCG	1 cut(s)	192
Bsu15I	ATCGAT	2 cut(s)	248, 328
BsuI	GTATCC	1 cut(s)	482
BsuRI	GGCC	3 cut(s)	194, 256, 349
BsuTUI	ATCGAT	2 cut(s)	248, 328
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	95, 527
Cac8I	GCNNGC	2 cut(s)	277, 313
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	5 cut(s)	18, 33, 62, 284, 627
Cfr10I	RCCGGY	2 cut(s)	302, 383
Cfr13I	GGNCC	1 cut(s)	149
Cfr9I	CCCGGG	1 cut(s)	556
ClaI	ATCGAT	2 cut(s)	248, 328
CsiI	ACCWGGT	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	240, 387
CspAI	ACCGGT	1 cut(s)	302
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	9 cut(s)	194, 236, 256, 349, 407, 413, 445, 581, 604
CviKI_1	RGCY	9 cut(s)	194, 236, 256, 349, 407, 413, 445, 581, 604
CviQI	GTAC	2 cut(s)	240, 387
DdeI	CTNAG	2 cut(s)	441, 576
DpnI	GATC	6 cut(s)	206, 222, 247, 251, 321, 327
DpnII	GATC	6 cut(s)	204, 220, 245, 249, 319, 325
DrdI	GACNNNNNNGTC	2 cut(s)	533, 551
DriI	GACNNNNNGTC	1 cut(s)	267
DseDI	GACNNNNNNGTC	2 cut(s)	533, 551
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	420
Eam1105I	GACNNNNNGTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	420
EclXI	CGGCCG	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	210, 446
Eco147I	AGGCCT	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	238
Eco31I	GGTCTC	3 cut(s)	85, 185, 275
Eco47I	GGWCC	1 cut(s)	149
Eco52I	CGGCCG	1 cut(s)	192
Eco57I	CTGAAG	2 cut(s)	328, 590
Eco88I	CYCGRG	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	145, 175
EcoT14I	CCWWGG	2 cut(s)	210, 446
EcoT22I	ATGCAT	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	2 cut(s)	210, 446
FaeI	CATG	1 cut(s)	229
FaiI	YATR	8 cut(s)	227, 260, 300, 374, 429, 548, 550, 591
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	2 cut(s)	521, 539
FatI	CATG	1 cut(s)	225
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	5 cut(s)	69, 72, 192, 280, 309
FokI	GGATG	2 cut(s)	82, 534
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	5 cut(s)	69, 72, 192, 280, 309
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	5 cut(s)	17, 32, 61, 283, 626
GluI	GCNGC	5 cut(s)	69, 72, 192, 280, 309
GsuI	CTGGAG	1 cut(s)	584
HaeIII	GGCC	3 cut(s)	194, 256, 349
HapII	CCGG	5 cut(s)	243, 303, 384, 410, 557
HhaI	GCGC	5 cut(s)	18, 33, 62, 284, 627
Hin1II	CATG	1 cut(s)	229
Hin6I	GCGC	5 cut(s)	16, 31, 60, 282, 625
HinP1I	GCGC	5 cut(s)	16, 31, 60, 282, 625
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	1 cut(s)	330
HpaII	CCGG	5 cut(s)	243, 303, 384, 410, 557
HphI	GGTGA	3 cut(s)	77, 117, 466
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	2 cut(s)	367, 609
Hpy188III	TCNNGA	2 cut(s)	226, 323
Hpy8I	GTNNAC	1 cut(s)	544
Hpy99I	CGWCG	2 cut(s)	68, 290
HpyAV	CCTTC	2 cut(s)	110, 165
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	2 cut(s)	298, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 281
HpyF3I	CTNAG	2 cut(s)	441, 576
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	1 cut(s)	229
HspAI	GCGC	5 cut(s)	16, 31, 60, 282, 625
Kzo9I	GATC	6 cut(s)	204, 220, 245, 249, 319, 325
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	3 cut(s)	58, 266, 295
LweI	GCATC	2 cut(s)	285, 426
MabI	ACCWGGT	1 cut(s)	145
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	6 cut(s)	206, 222, 247, 251, 321, 327
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	6 cut(s)	204, 220, 245, 249, 319, 325
MboII	GAAGA	3 cut(s)	334, 407, 622
MhlI	GDGCHC	2 cut(s)	238, 566
MluCI	AATT	2 cut(s)	197, 531
Mph1103I	ATGCAT	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	2 cut(s)	71, 575
MspI	CCGG	5 cut(s)	243, 303, 384, 410, 557
MspR9I	CCNGG	4 cut(s)	147, 177, 557, 558
MvaI	CCWGG	2 cut(s)	147, 177
MvnI	CGCG	3 cut(s)	16, 31, 60
MwoI	GCNNNNNNNGC	2 cut(s)	68, 281
NciI	CCSGG	2 cut(s)	557, 558
NdeII	GATC	6 cut(s)	204, 220, 245, 249, 319, 325
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	2 cut(s)	408, 563
NmuCI	GTSAC	1 cut(s)	524
NsiI	ATGCAT	1 cut(s)	300
PagI	TCATGA	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	330
PflFI	GACNNNGTC	1 cut(s)	147
PinAI	ACCGGT	1 cut(s)	302
PkrI	GCNGC	5 cut(s)	70, 73, 193, 281, 310
Ple19I	CGATCG	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	145, 175
PspGI	CCWGG	2 cut(s)	145, 175
PspN4I	GGNNCC	2 cut(s)	408, 563
PspPI	GGNCC	1 cut(s)	149
PsyI	GACNNNGTC	1 cut(s)	147
PvuI	CGATCG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	241, 388
RsaNI	GTAC	2 cut(s)	240, 387
RseI	CAYNNNNRTG	1 cut(s)	303
SalI	GTCGAC	1 cut(s)	542
SapI	GCTCTTC	1 cut(s)	420
SatI	GCNGC	5 cut(s)	69, 72, 192, 280, 309
Sau3AI	GATC	6 cut(s)	204, 220, 245, 249, 319, 325
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	4 cut(s)	147, 177, 557, 558
SduI	GDGCHC	2 cut(s)	238, 566
SexAI	ACCWGGT	1 cut(s)	145
SfaNI	GCATC	2 cut(s)	285, 426
SinI	GGWCC	1 cut(s)	149
SmaI	CCCGGG	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	2 cut(s)	197, 531
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	5 cut(s)	24, 69, 105, 191, 573
SspMI	CTAG	1 cut(s)	351
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	4 cut(s)	145, 175, 555, 556
StyI	CCWWGG	2 cut(s)	210, 446
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	8 cut(s)	158, 216, 248, 288, 324, 328, 517, 543
TaqII	GACCGA	1 cut(s)	67
TasI	AATT	2 cut(s)	197, 531
TauI	GCSGC	2 cut(s)	71, 194
TfiI	GAWTC	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	3 cut(s)	71, 279, 308
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	1 cut(s)	242
TspMI	CCCGGG	1 cut(s)	556
Tth111I	GACNNNGTC	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	197
XmaI	CCCGGG	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.