Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013207

Physical Location & Seq

Genomic Coordinates Forward (+)

36054418 .. 36056122

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G414100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTCTGCTGACCCGAGCCTCACGCATCCCTCTCCAGCTCTCGGCCCAGCGGGCCCTCTCTCTCCACACGACCGTCCCCTCGCTGTCGTCTTCCTCCCCCTCCGGCTCAACTCCGACCACATATGCCCGCCCTCCTCCCCCCTCGGCCTCGCTGCCTCCGGCTGGCCTCTCCAAGGCCGCCGAGTTCGTGATCTCGAAGGTCGACGATCTCATGAACTGGGCCCGCCGTGGGTCCATCTGGCCCATGACCTTCGGCCTCGCCTGCTGCGCCGTCGAGATGATGCACACCGGAGCCGCCCGATATGATTTGGACCGATTCGGCATCATTTTCCGGCCCAGCCCTCGCCAGTCTGATTGCATGATCGTCGCCGGCACTCTCACCAACAAGATGGCCCCCGCTCTCCGCAAGGTTTATGACCAAATGCCTGAGCCTAGATGGGTCATCTCTATGGGAAGCTGTGCAAATGGGGGTGGTTACTACCATTACTCGTATTCCGTTGTTAGGGGTTGTGACAGGATTGTCCCTGTTGATATCTACGTTCCTGGCTGTCCTCCCACTGCCGAGGCCCTACTTTACGGCCTTCTCCAGCTCCAGAAGAAGATCAACAGGCGCAAGGATTTCCTCCTTTGGTGGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008270 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Oxidored_q6

Protein Analysis

215

Amino Acids

23.57

Weight (kDa)

9.63

Isoelectric Point (pI)

63.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11770
fragaria_vesca	FvH4_2g32100
malus_domestica	MD08G1044100.v1.1 MD15G1061400.v1.1
prunus_persica	Prupe.1G414100_v2.0.a1
pyrus_communis	pycom08g03560
rosa_chinensis	RchiOBHm_Chr3g0475351 RchiOBHm_Chr6g0310641
rosa_laevigata	RLG00000010470
rosa_multiflora	Rmu_sc0005386.1_g000005 Rmu_sc0007390.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158390
rosa_rugosa	Rorug06G0381800
rosa_samantha	Rh6AG495800 Rh6BG505300 Rh6CG510900 Rh6DG496700
rosa_wichuraiana	Rw6G043110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	521
AccBSI	CCGCTC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	7 cut(s)	52, 130, 180, 226, 297, 399, 406
AfiI	CCNNNNNNNGG	5 cut(s)	43, 164, 175, 231, 504
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	3 cut(s)	40, 459, 592
AluI	AGCT	3 cut(s)	40, 459, 592
Ama87I	CYCGRG	1 cut(s)	15
ApaI	GGGCCC	2 cut(s)	58, 226
ApeKI	GCWGC	2 cut(s)	154, 267
AspLEI	GCGC	2 cut(s)	272, 615
AsuHPI	GGTGA	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	3 cut(s)	234, 313, 636
BaeGI	GKGCMC	2 cut(s)	58, 226
BanII	GRGCYC	2 cut(s)	58, 226
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	141, 254
BccI	CCATC	3 cut(s)	245, 385, 432
BceAI	ACGGC	3 cut(s)	213, 257, 595
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	1 cut(s)	546
BfaI	CTAG	1 cut(s)	435
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	155, 180, 268, 297
BlsI	GCNGC	4 cut(s)	156, 181, 269, 298
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	3 cut(s)	234, 313, 636
BmeT110I	CYCGRG	1 cut(s)	15
BmiI	GGNNCC	5 cut(s)	56, 224, 235, 295, 396
BmrFI	CCNGG	1 cut(s)	546
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	3 cut(s)	36, 273, 333
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	3 cut(s)	20, 572, 578
Bpu10I	CCTNAGC	1 cut(s)	429
BsaJI	CCNNGG	4 cut(s)	144, 174, 229, 564
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 164, 175, 231, 504
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	224, 349
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	4 cut(s)	144, 174, 229, 564
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	5 cut(s)	43, 164, 175, 231, 504
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	224, 349
BseRI	GAGGAG	1 cut(s)	126
BseSI	GKGCMC	2 cut(s)	58, 226
BseXI	GCAGC	2 cut(s)	141, 254
BseYI	CCCAGC	2 cut(s)	48, 338
Bsh1285I	CGRYCG	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	5 cut(s)	105, 161, 291, 334, 372
BslFI	GGGAC	2 cut(s)	62, 509
BslI	CCNNNNNNNGG	5 cut(s)	43, 164, 175, 231, 504
BsmFI	GGGAC	2 cut(s)	62, 509
BsoBI	CYCGRG	1 cut(s)	15
Bsp120I	GGGCCC	2 cut(s)	54, 222
Bsp1286I	GDGCHC	2 cut(s)	58, 226
Bsp143I	GATC	4 cut(s)	192, 208, 363, 603
BspACI	CCGC	7 cut(s)	52, 130, 180, 226, 297, 399, 406
BspCNI	CTCAG	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	5 cut(s)	56, 224, 235, 295, 396
BsrBI	CCGCTC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	224, 349
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	4 cut(s)	144, 174, 229, 564
BssMI	GATC	4 cut(s)	192, 208, 363, 603
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	6 cut(s)	54, 130, 166, 226, 265, 373
BstDEI	CTNAG	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	272, 615
BstKTI	GATC	4 cut(s)	195, 211, 366, 606
BstMBI	GATC	4 cut(s)	192, 208, 363, 603
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 264, 269
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	1 cut(s)	544
BstSLI	GKGCMC	2 cut(s)	58, 226
BstV1I	GCAGC	2 cut(s)	141, 254
BstV2I	GAAGAC	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	391
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	6 cut(s)	54, 130, 166, 226, 265, 373
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	2 cut(s)	272, 615
Cfr10I	RCCGGY	1 cut(s)	371
CviAII	CATG	3 cut(s)	214, 247, 361
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	4 cut(s)	194, 210, 365, 605
DpnII	GATC	4 cut(s)	192, 208, 363, 603
DrdI	GACNNNNNNGTC	1 cut(s)	521
DseDI	GACNNNNNNGTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	2 cut(s)	58, 226
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	3 cut(s)	234, 313, 636
Eco88I	CYCGRG	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO109I	RGGNCCY	2 cut(s)	55, 568
EcoRII	CCWGG	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	2 cut(s)	58, 226
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	217, 250, 364
FaiI	YATR	8 cut(s)	124, 126, 215, 248, 306, 362, 417, 452
FaqI	GGGAC	2 cut(s)	62, 509
FatI	CATG	3 cut(s)	213, 246, 360
FauI	CCCGC	4 cut(s)	45, 137, 233, 406
FauNDI	CATATG	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	155, 180, 268, 297
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	2 cut(s)	58, 226
Fsp4HI	GCNGC	4 cut(s)	155, 180, 268, 297
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	2 cut(s)	271, 614
GluI	GCNGC	4 cut(s)	155, 180, 268, 297
GsaI	CCCAGC	2 cut(s)	52, 342
GsuI	CTGGAG	3 cut(s)	20, 572, 578
HapII	CCGG	5 cut(s)	105, 161, 291, 334, 372
HhaI	GCGC	2 cut(s)	272, 615
Hin1II	CATG	3 cut(s)	217, 250, 364
Hin6I	GCGC	2 cut(s)	270, 613
HinP1I	GCGC	2 cut(s)	270, 613
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	318
HpaII	CCGG	5 cut(s)	105, 161, 291, 334, 372
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	205, 636
Hpy188I	TCNGA	2 cut(s)	117, 355
Hpy188III	TCNNGA	5 cut(s)	190, 196, 214, 277, 595
Hpy8I	GTNNAC	2 cut(s)	205, 636
Hpy99I	CGWCG	3 cut(s)	209, 278, 371
HpyAV	CCTTC	3 cut(s)	193, 262, 593
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	3 cut(s)	286, 360, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 264, 269
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	217, 250, 364
HspAI	GCGC	2 cut(s)	270, 613
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	192, 208, 363, 603
LmnI	GCTCC	2 cut(s)	293, 597
Lsp1109I	GCAGC	2 cut(s)	141, 254
LweI	GCATC	3 cut(s)	36, 273, 333
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	2 cut(s)	476, 512
MalI	GATC	4 cut(s)	194, 210, 365, 605
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	4 cut(s)	192, 208, 363, 603
MboII	GAAGA	3 cut(s)	84, 610, 613
MhlI	GDGCHC	2 cut(s)	58, 226
MmeI	TCCRAC	1 cut(s)	140
MroNI	GCCGGC	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	5 cut(s)	105, 161, 291, 334, 372
MspR9I	CCNGG	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	3 cut(s)	53, 264, 269
NaeI	GCCGGC	1 cut(s)	373
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	4 cut(s)	192, 208, 363, 603
NgoMIV	GCCGGC	1 cut(s)	371
NlaIII	CATG	3 cut(s)	217, 250, 364
NlaIV	GGNNCC	5 cut(s)	56, 224, 235, 295, 396
NmeAIII	GCCGAG	4 cut(s)	23, 125, 208, 589
NmuCI	GTSAC	1 cut(s)	512
PagI	TCATGA	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	4 cut(s)	156, 181, 269, 298
Psp6I	CCWGG	1 cut(s)	544
PspFI	CCCAGC	2 cut(s)	48, 338
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	5 cut(s)	56, 224, 235, 295, 396
PspOMI	GGGCCC	2 cut(s)	54, 222
RseI	CAYNNNNRTG	1 cut(s)	449
SalI	GTCGAC	1 cut(s)	203
SatI	GCNGC	4 cut(s)	155, 180, 268, 297
Sau3AI	GATC	4 cut(s)	192, 208, 363, 603
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	2 cut(s)	58, 226
SetI	ASST	7 cut(s)	42, 204, 254, 414, 461, 543, 594
SfaNI	GCATC	3 cut(s)	36, 273, 333
SfiI	GGCCNNNNNGGCC	1 cut(s)	53
SinI	GGWCC	3 cut(s)	234, 313, 636
SmiMI	CAYNNNNRTG	1 cut(s)	449
SsiI	CCGC	7 cut(s)	52, 130, 180, 226, 297, 399, 406
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	3 cut(s)	197, 204, 276
TaqII	GACCGA	1 cut(s)	330
TauI	GCSGC	2 cut(s)	182, 299
TfiI	GAWTC	1 cut(s)	318
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	2 cut(s)	154, 267
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	1 cut(s)	230
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	3 cut(s)	234, 313, 636
XagI	CCTNNNNNAGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.