Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005386.1

Orthogroup ID

OG0013207

Physical Location & Seq

Genomic Coordinates Reverse (-)

22935 .. 24237

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005386.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgatcgtcgccggtactctcaccaataagatggcccccgctctccgcaaggtttatgaccaaatgcctgagcctagatgggtcatctctatgggtagctgtgcaaatgggggtggttactaccattactcgtattccgttgttaggggttgtgacaggattgtccctgttgatatctacgttccgggctgtcctcccactgctgaggccttactctatggccttctccagttgcagaagaagatcaaccggcgcaaagatttcctcctttggtggaccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008270 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Oxidored_q6

Protein Analysis

94

Amino Acids

10.68

Weight (kDa)

9.44

Isoelectric Point (pI)

64.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11770
fragaria_vesca	FvH4_2g32100
malus_domestica	MD08G1044100.v1.1 MD15G1061400.v1.1
prunus_persica	Prupe.1G414100_v2.0.a1
pyrus_communis	pycom08g03560
rosa_chinensis	RchiOBHm_Chr3g0475351 RchiOBHm_Chr6g0310641
rosa_laevigata	RLG00000010470
rosa_multiflora	Rmu_sc0005386.1_g000005 Rmu_sc0007390.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158390
rosa_rugosa	Rorug06G0381800
rosa_samantha	Rh6AG495800 Rh6BG505300 Rh6CG510900 Rh6DG496700
rosa_wichuraiana	Rw6G043110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	41
AciI	CCGC	2 cut(s)	39, 46
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	144
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
AoxI	GGCC	3 cut(s)	33, 207, 220
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	34, 276
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	204
BccI	CCATC	2 cut(s)	25, 72
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	2 cut(s)	34, 276
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	212
Bpu10I	CCTNAGC	2 cut(s)	69, 204
BpuMI	CCSGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	2 cut(s)	11, 249
Bse1I	ACTGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	60, 195
BseNI	ACTGG	1 cut(s)	229
BshFI	GGCC	3 cut(s)	35, 209, 222
BsiSI	CCGG	3 cut(s)	12, 185, 250
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	35, 209, 222
Bsp143I	GATC	2 cut(s)	3, 243
BspACI	CCGC	2 cut(s)	39, 46
BspANI	GGCC	3 cut(s)	35, 209, 222
BspCNI	CTCAG	2 cut(s)	61, 196
BspLI	GGNNCC	1 cut(s)	36
BsrBI	CCGCTC	1 cut(s)	41
BsrFI	RCCGGY	2 cut(s)	11, 249
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	2 cut(s)	11, 249
BssMI	GATC	2 cut(s)	3, 243
BstDEI	CTNAG	2 cut(s)	69, 204
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	6, 246
BstMBI	GATC	2 cut(s)	3, 243
BstSCI	CCNGG	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	35, 209, 222
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
CfoI	GCGC	1 cut(s)	255
Cfr10I	RCCGGY	2 cut(s)	11, 249
Cfr13I	GGNCC	2 cut(s)	34, 276
Csp6I	GTAC	1 cut(s)	15
CviJI	RGCY	6 cut(s)	35, 73, 99, 189, 209, 222
CviKI_1	RGCY	6 cut(s)	35, 73, 99, 189, 209, 222
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	2 cut(s)	69, 204
DpnI	GATC	2 cut(s)	5, 245
DpnII	GATC	2 cut(s)	3, 243
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eco147I	AGGCCT	1 cut(s)	209
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	175
FaiI	YATR	3 cut(s)	57, 92, 219
FaqI	GGGAC	1 cut(s)	149
FauI	CCCGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	3 cut(s)	35, 209, 222
HapII	CCGG	3 cut(s)	12, 185, 250
HhaI	GCGC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HpaII	CCGG	3 cut(s)	12, 185, 250
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	276
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	104, 235
HpyF3I	CTNAG	2 cut(s)	69, 204
HpySE526I	ACGT	1 cut(s)	180
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	3, 243
LpnPI	CCDG	7 cut(s)	25, 81, 142, 180, 198, 242, 263
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	116, 152
MalI	GATC	2 cut(s)	5, 245
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	2 cut(s)	3, 243
MboII	GAAGA	2 cut(s)	250, 253
MnlI	CCTC	3 cut(s)	199, 204, 275
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	3 cut(s)	12, 185, 250
MspR9I	CCNGG	1 cut(s)	186
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	2 cut(s)	3, 243
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	34, 276
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	89
Sau3AI	GATC	2 cut(s)	3, 243
Sau96I	GGNCC	2 cut(s)	34, 276
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	3 cut(s)	54, 101, 183
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	89
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	39, 46
SspMI	CTAG	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	184
TaiI	ACGT	1 cut(s)	183
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	276
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.