Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013207

Physical Location & Seq

Genomic Coordinates Forward (+)

24428123 .. 24430429

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTTTGCTGACTCGAGTCCCGCGCGTGCCTCTCCAGCTCGGCGCCCAACGCGCCCTCGCCCTCCACACCACCCCGTCTCTCTACTCCTCCGCCACCTCCTCCTCTCCGGCCACCTACGAACGCCCTCCCCCGCCGGCCACGTCGTCCCCGGCCGGACTCTCCAAGGCGGCGGAGTTCGTGATCTCCAAGGTCGACGATCTGATGAACTGGGCCCGGCGTGGCTCCATCTGGCCCATGACCTTCGGCCTCGCTTGCTGCGCCGTCGAGATGATGCACACCGGCGCTGCCCGCTACGATTTGGACCGCTTCGGTATCATTTTCCGGCCAAGCCCTCGCCAGTCCGATTGCATGATCGTCGCCGGCACTCTCACCAATAAGATGGCCCCGGCTCTCCGCAAGGTTTATGACCAAATGCCTGAGCCTAGATGGGTCATCTCTATGGGCAGCTGTGCAAATGGGGGTGGCTACTACCATTACTCGTATTCTGTCGTCAGGGGATGTGACAGGATTGTCCCTGTTGATATCTACGTCCCGGGCTGTCCTCCCACTGCTGAGGCCCTACTCTATGGCCTTCTCCAGTTGCAGAAGAAGATCAACCGGCGCAAAGATTTCCTCCTCTGGTGGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008270 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Oxidored_q6

Protein Analysis

212

Amino Acids

23.36

Weight (kDa)

9.51

Isoelectric Point (pI)

63.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_q6	PF01058	86 - 195	3.9e-28	NADH ubiquinone oxidoreductase, 20 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11770
fragaria_vesca	FvH4_2g32100
malus_domestica	MD08G1044100.v1.1 MD15G1061400.v1.1
prunus_persica	Prupe.1G414100_v2.0.a1
pyrus_communis	pycom08g03560
rosa_chinensis	RchiOBHm_Chr3g0475351 RchiOBHm_Chr6g0310641
rosa_laevigata	RLG00000010470
rosa_multiflora	Rmu_sc0005386.1_g000005 Rmu_sc0007390.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158390
rosa_rugosa	Rorug06G0381800
rosa_samantha	Rh6AG495800 Rh6BG505300 Rh6CG510900 Rh6DG496700
rosa_wichuraiana	Rw6G043110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	3 cut(s)	25, 27, 54
AciI	CCGC	8 cut(s)	23, 93, 134, 170, 173, 292, 307, 397
AcoI	YGGCCR	4 cut(s)	111, 138, 153, 326
AcyI	GRCGYC	1 cut(s)	45
AjiI	CACGTC	1 cut(s)	144
AluBI	AGCT	2 cut(s)	40, 450
AluI	AGCT	2 cut(s)	40, 450
Alw26I	GTCTC	1 cut(s)	84
Ama87I	CYCGRG	2 cut(s)	15, 535
ApaI	GGGCCC	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	258, 287, 447
AspLEI	GCGC	6 cut(s)	27, 47, 56, 263, 287, 606
AspS9I	GGNCC	7 cut(s)	213, 214, 234, 304, 385, 559, 627
AsuC2I	CCSGG	5 cut(s)	152, 217, 389, 536, 537
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	2 cut(s)	15, 535
AvaII	GGWCC	2 cut(s)	304, 627
BaeGI	GKGCMC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	3 cut(s)	245, 274, 459
BccI	CCATC	3 cut(s)	236, 376, 423
BceAI	ACGGC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BcnI	CCSGG	5 cut(s)	152, 217, 389, 536, 537
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	426
BfoI	RGCGCY	2 cut(s)	48, 288
BisI	GCNGC	4 cut(s)	171, 259, 288, 448
BlsI	GCNGC	4 cut(s)	172, 260, 289, 449
Bme1390I	CCNGG	5 cut(s)	152, 217, 389, 536, 537
Bme18I	GGWCC	2 cut(s)	304, 627
BmeT110I	CYCGRG	2 cut(s)	15, 535
BmgBI	CACGTC	1 cut(s)	144
BmgT120I	GGNCC	7 cut(s)	213, 214, 234, 304, 385, 559, 627
BmiI	GGNNCC	4 cut(s)	46, 215, 226, 387
BmrFI	CCNGG	5 cut(s)	152, 217, 389, 536, 537
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	17
BpmI	CTGGAG	2 cut(s)	20, 563
Bpu10I	CCTNAGC	2 cut(s)	420, 555
BpuMI	CCSGG	5 cut(s)	152, 217, 389, 536, 537
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	5 cut(s)	150, 165, 189, 387, 535
Bse118I	RCCGGY	4 cut(s)	136, 281, 362, 600
Bse1I	ACTGG	3 cut(s)	215, 340, 580
BseDI	CCNNGG	5 cut(s)	150, 165, 189, 387, 535
BseGI	GGATG	1 cut(s)	506
BseMII	CTCAG	2 cut(s)	411, 546
BseNI	ACTGG	3 cut(s)	215, 340, 580
BseRI	GAGGAG	4 cut(s)	79, 91, 94, 608
BseSI	GKGCMC	1 cut(s)	217
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	245, 274, 459
Bsh1236I	CGCG	3 cut(s)	25, 27, 54
Bsh1285I	CGRYCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	2 cut(s)	15, 535
BslFI	GGGAC	4 cut(s)	5, 133, 500, 518
BsmAI	GTCTC	1 cut(s)	84
BsmBI	CGTCTC	1 cut(s)	84
BsmFI	GGGAC	4 cut(s)	5, 133, 500, 518
BsoBI	CYCGRG	2 cut(s)	15, 535
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	4 cut(s)	183, 199, 354, 594
BspACI	CCGC	8 cut(s)	23, 93, 134, 170, 173, 292, 307, 397
BspCNI	CTCAG	2 cut(s)	412, 547
BspFNI	CGCG	3 cut(s)	25, 27, 54
BspLI	GGNNCC	4 cut(s)	46, 215, 226, 387
BspT107I	GGYRCC	1 cut(s)	44
BsrFI	RCCGGY	4 cut(s)	136, 281, 362, 600
BsrI	ACTGG	3 cut(s)	215, 340, 580
BssAI	RCCGGY	4 cut(s)	136, 281, 362, 600
BssECI	CCNNGG	5 cut(s)	150, 165, 189, 387, 535
BssMI	GATC	4 cut(s)	183, 199, 354, 594
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	2 cut(s)	165, 189
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	5 cut(s)	29, 138, 256, 292, 364
BstDEI	CTNAG	2 cut(s)	420, 555
BstF5I	GGATG	1 cut(s)	506
BstFNI	CGCG	3 cut(s)	25, 27, 54
BstH2I	RGCGCY	2 cut(s)	48, 288
BstHHI	GCGC	6 cut(s)	27, 47, 56, 263, 287, 606
BstKTI	GATC	4 cut(s)	186, 202, 357, 597
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	4 cut(s)	183, 199, 354, 594
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 51, 53, 255, 260, 291
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	5 cut(s)	150, 215, 387, 534, 535
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	3 cut(s)	25, 27, 54
BstV1I	GCAGC	3 cut(s)	245, 274, 459
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	506
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	5 cut(s)	29, 138, 256, 292, 364
CfoI	GCGC	6 cut(s)	27, 47, 56, 263, 287, 606
Cfr10I	RCCGGY	4 cut(s)	136, 281, 362, 600
Cfr13I	GGNCC	7 cut(s)	213, 214, 234, 304, 385, 559, 627
Cfr9I	CCCGGG	1 cut(s)	535
CviAII	CATG	2 cut(s)	238, 352
DdeI	CTNAG	2 cut(s)	420, 555
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	4 cut(s)	185, 201, 356, 596
DpnII	GATC	4 cut(s)	183, 199, 354, 594
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	4 cut(s)	111, 138, 153, 326
EagI	CGGCCG	1 cut(s)	153
EciI	GGCGGA	2 cut(s)	82, 188
EclXI	CGGCCG	1 cut(s)	153
Eco130I	CCWWGG	2 cut(s)	165, 189
Eco24I	GRGCYC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	2 cut(s)	304, 627
Eco52I	CGGCCG	1 cut(s)	153
Eco88I	CYCGRG	2 cut(s)	15, 535
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	165, 189
EcoT38I	GRGCYC	1 cut(s)	217
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	2 cut(s)	165, 189
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	2 cut(s)	241, 355
FaiI	YATR	5 cut(s)	239, 353, 408, 443, 570
FaqI	GGGAC	4 cut(s)	5, 133, 500, 518
FatI	CATG	2 cut(s)	237, 351
FauI	CCCGC	3 cut(s)	30, 141, 299
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	171, 259, 288, 448
FokI	GGATG	1 cut(s)	513
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	4 cut(s)	171, 259, 288, 448
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	6 cut(s)	26, 46, 55, 262, 286, 605
GluI	GCNGC	4 cut(s)	171, 259, 288, 448
GsuI	CTGGAG	2 cut(s)	20, 563
HaeII	RGCGCY	2 cut(s)	48, 288
HhaI	GCGC	6 cut(s)	27, 47, 56, 263, 287, 606
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	241, 355
Hin6I	GCGC	6 cut(s)	25, 45, 54, 261, 285, 604
HinP1I	GCGC	6 cut(s)	25, 45, 54, 261, 285, 604
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	13, 18, 159
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	196, 627
Hpy188I	TCNGA	2 cut(s)	204, 346
Hpy188III	TCNNGA	2 cut(s)	181, 268
Hpy8I	GTNNAC	2 cut(s)	196, 627
Hpy99I	CGWCG	4 cut(s)	148, 200, 269, 362
HpyAV	CCTTC	2 cut(s)	253, 584
HpyCH4IV	ACGT	2 cut(s)	143, 531
HpyCH4V	TGCA	4 cut(s)	277, 351, 455, 586
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 51, 53, 255, 260, 291
HpyF3I	CTNAG	2 cut(s)	420, 555
HpySE526I	ACGT	2 cut(s)	143, 531
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	241, 355
HspAI	GCGC	6 cut(s)	25, 45, 54, 261, 285, 604
KasI	GGCGCC	1 cut(s)	44
KroI	GCCGGC	2 cut(s)	136, 362
KroNI	GCCGGC	2 cut(s)	138, 364
Kzo9I	GATC	4 cut(s)	183, 199, 354, 594
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	3 cut(s)	245, 274, 459
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	143, 531
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	4 cut(s)	185, 201, 356, 596
MboI	GATC	4 cut(s)	183, 199, 354, 594
MboII	GAAGA	2 cut(s)	601, 604
MhlI	GDGCHC	1 cut(s)	217
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	7, 27, 153
MroNI	GCCGGC	2 cut(s)	136, 362
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	450
MspR9I	CCNGG	5 cut(s)	152, 217, 389, 536, 537
MvnI	CGCG	3 cut(s)	25, 27, 54
MwoI	GCNNNNNNNGC	6 cut(s)	37, 51, 53, 255, 260, 291
NaeI	GCCGGC	2 cut(s)	138, 364
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	5 cut(s)	152, 217, 389, 536, 537
NdeII	GATC	4 cut(s)	183, 199, 354, 594
NgoMIV	GCCGGC	2 cut(s)	136, 362
NlaIII	CATG	2 cut(s)	241, 355
NlaIV	GGNNCC	4 cut(s)	46, 215, 226, 387
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	503
PaeR7I	CTCGAG	1 cut(s)	15
PdiI	GCCGGC	2 cut(s)	138, 364
PkrI	GCNGC	4 cut(s)	172, 260, 289, 449
PleI	GAGTC	3 cut(s)	7, 26, 153
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	3 cut(s)	7, 26, 153
PshAI	GACNNNNGTC	1 cut(s)	17
PspN4I	GGNNCC	4 cut(s)	46, 215, 226, 387
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	7 cut(s)	213, 214, 234, 304, 385, 559, 627
PspXI	VCTCGAGB	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	440
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	4 cut(s)	171, 259, 288, 448
Sau3AI	GATC	4 cut(s)	183, 199, 354, 594
Sau96I	GGNCC	7 cut(s)	213, 214, 234, 304, 385, 559, 627
SchI	GAGTC	3 cut(s)	7, 27, 153
ScrFI	CCNGG	5 cut(s)	152, 217, 389, 536, 537
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	9 cut(s)	42, 101, 119, 146, 195, 245, 405, 452, 534
SfaNI	GCATC	1 cut(s)	264
SfoI	GGCGCC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	15
SgrAI	CRCCGGYG	1 cut(s)	281
SinI	GGWCC	2 cut(s)	304, 627
SlaI	CTCGAG	1 cut(s)	15
SmaI	CCCGGG	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SsiI	CCGC	8 cut(s)	23, 93, 134, 170, 173, 292, 307, 397
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	5 cut(s)	150, 215, 387, 534, 535
StyI	CCWWGG	2 cut(s)	165, 189
TaiI	ACGT	2 cut(s)	146, 534
TaqI	TCGA	3 cut(s)	16, 195, 267
TauI	GCSGC	1 cut(s)	173
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	3 cut(s)	258, 287, 447
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	221
TspMI	CCCGGG	1 cut(s)	535
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	2 cut(s)	304, 627
XhoI	CTCGAG	1 cut(s)	15
XmaI	CCCGGG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.