Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013207

Physical Location & Seq

Genomic Coordinates Forward (+)

4130559 .. 4132168

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1061400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTCTGCTGACCCGTGCCCGCATCCCTCTCCAGCTCTCGGCCCAGCGGGCCCTCTCTCTCCACACCACCGTCCCCTCCCTCTCGTCCTCCGCCCCCTCCGGCTCCACTCCGGCCACCTATGCCCGCCCTCCTCCCCCTTCCGCCTCCCCGCCCCCGCCGGGCCTCTCCAAGGCCGCCGAGTTCGTGATCTCGAAGGTCGACGATCTCATGAACTGGGCCCGCCGCGGCTCTATCTGGCCCATGACCTTCGGCCTCGCCTGCTGCGCCGTCGAGATGATGCACACCGGAGCCGCCCGCTACGATTTGGACAGATTCGGCATCATCTTCCGGCCCAGCCCTCGCCAGTCCGATTGCATGATCGTCGCCGGCACTCTCACCAACAAGATGGCCCCTGCTCTCCGCAAGGTCTATGACCAAATGCCTGAGCCGAGATGGGTCATCTCCATGGGAAGCTGTGCAAATGGGGGTGGTTACTATCATTACTCCTATTCTGTTGTTAGGGGTTGTGACAGGATCGTCCCCGTTGATATCTATGTTCCAGGCTGCCCTCCCACTGCTGAGGCCCTACTTTACGGCCTTCTCCAGCTACAGAAGAAGATCAACCGGCGCAAGGATTTCCTCCTTTGGTGGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008270 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Oxidored_q6

Protein Analysis

214

Amino Acids

23.45

Weight (kDa)

9.63

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_q6	PF01058	88 - 197	4e-28	NADH ubiquinone oxidoreductase, 20 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11770
fragaria_vesca	FvH4_2g32100
malus_domestica	MD08G1044100.v1.1 MD15G1061400.v1.1
prunus_persica	Prupe.1G414100_v2.0.a1
pyrus_communis	pycom08g03560
rosa_chinensis	RchiOBHm_Chr3g0475351 RchiOBHm_Chr6g0310641
rosa_laevigata	RLG00000010470
rosa_multiflora	Rmu_sc0005386.1_g000005 Rmu_sc0007390.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158390
rosa_rugosa	Rorug06G0381800
rosa_samantha	Rh6AG495800 Rh6BG505300 Rh6CG510900 Rh6DG496700
rosa_wichuraiana	Rw6G043110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	228
AclWI	GGATC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	114
AfiI	CCNNNNNNNGG	4 cut(s)	40, 161, 172, 613
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	3 cut(s)	37, 456, 589
AluI	AGCT	3 cut(s)	37, 456, 589
AlwI	GGATC	1 cut(s)	524
ApaI	GGGCCC	2 cut(s)	55, 223
ApeKI	GCWGC	2 cut(s)	264, 546
AspLEI	GCGC	2 cut(s)	269, 612
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	633
BaeGI	GKGCMC	3 cut(s)	22, 55, 223
BanII	GRGCYC	2 cut(s)	55, 223
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	251, 533
BccI	CCATC	2 cut(s)	382, 429
BceAI	ACGGC	2 cut(s)	254, 592
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	590
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	6 cut(s)	177, 226, 229, 265, 294, 547
BlsI	GCNGC	6 cut(s)	178, 227, 230, 266, 295, 548
Bme1390I	CCNGG	2 cut(s)	162, 543
Bme18I	GGWCC	1 cut(s)	633
BmiI	GGNNCC	5 cut(s)	53, 106, 221, 292, 393
BmrFI	CCNGG	2 cut(s)	162, 543
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	3 cut(s)	33, 270, 330
BmuI	ACTGGG	1 cut(s)	226
BpmI	CTGGAG	2 cut(s)	17, 569
Bpu10I	CCTNAGC	2 cut(s)	426, 561
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	171, 226, 447
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 161, 172, 613
Bse118I	RCCGGY	2 cut(s)	368, 606
Bse1I	ACTGG	2 cut(s)	221, 346
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	171, 226, 447
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	4 cut(s)	40, 161, 172, 613
BseMII	CTCAG	2 cut(s)	417, 552
BseNI	ACTGG	2 cut(s)	221, 346
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	3 cut(s)	22, 55, 223
BseXI	GCAGC	2 cut(s)	251, 533
BseYI	CCCAGC	2 cut(s)	45, 335
Bsh1236I	CGCG	1 cut(s)	228
BsiSI	CCGG	7 cut(s)	102, 113, 161, 288, 331, 369, 607
BslFI	GGGAC	2 cut(s)	59, 506
BslI	CCNNNNNNNGG	4 cut(s)	40, 161, 172, 613
BsmFI	GGGAC	2 cut(s)	59, 506
Bsp120I	GGGCCC	2 cut(s)	51, 219
Bsp1286I	GDGCHC	3 cut(s)	22, 55, 223
Bsp143I	GATC	5 cut(s)	189, 205, 360, 516, 600
Bsp19I	CCATGG	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	418, 553
BspFNI	CGCG	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	5 cut(s)	53, 106, 221, 292, 393
BspPI	GGATC	1 cut(s)	524
BsrFI	RCCGGY	2 cut(s)	368, 606
BsrI	ACTGG	2 cut(s)	221, 346
BssAI	RCCGGY	2 cut(s)	368, 606
BssECI	CCNNGG	3 cut(s)	171, 226, 447
BssMI	GATC	5 cut(s)	189, 205, 360, 516, 600
BssT1I	CCWWGG	2 cut(s)	171, 447
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	7 cut(s)	22, 51, 127, 223, 262, 298, 370
BstDEI	CTNAG	2 cut(s)	426, 561
BstDSI	CCRYGG	2 cut(s)	226, 447
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	269, 612
BstKTI	GATC	5 cut(s)	192, 208, 363, 519, 603
BstMBI	GATC	5 cut(s)	189, 205, 360, 516, 600
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 122, 261, 266
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	2 cut(s)	160, 541
BstSFI	CTRYAG	1 cut(s)	590
BstSLI	GKGCMC	3 cut(s)	22, 55, 223
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	251, 533
BstXI	CCANNNNNNTGG	1 cut(s)	388
BtgI	CCRYGG	2 cut(s)	226, 447
BtsCI	GGATG	1 cut(s)	24
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	7 cut(s)	22, 51, 127, 223, 262, 298, 370
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	2 cut(s)	269, 612
Cfr10I	RCCGGY	2 cut(s)	368, 606
Cfr42I	CCGCGG	1 cut(s)	229
CviAII	CATG	4 cut(s)	211, 244, 358, 448
DdeI	CTNAG	2 cut(s)	426, 561
DpnI	GATC	5 cut(s)	191, 207, 362, 518, 602
DpnII	GATC	5 cut(s)	189, 205, 360, 516, 600
DrdI	GACNNNNNNGTC	1 cut(s)	518
DseDI	GACNNNNNNGTC	1 cut(s)	518
EaeI	YGGCCR	1 cut(s)	114
EciI	GGCGGA	2 cut(s)	82, 133
Eco130I	CCWWGG	2 cut(s)	171, 447
Eco24I	GRGCYC	2 cut(s)	55, 223
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	633
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoO109I	RGGNCCY	2 cut(s)	52, 565
EcoRII	CCWGG	1 cut(s)	541
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	171, 447
EcoT38I	GRGCYC	2 cut(s)	55, 223
ErhI	CCWWGG	2 cut(s)	171, 447
FaeI	CATG	4 cut(s)	214, 247, 361, 451
FaiI	YATR	7 cut(s)	123, 212, 245, 359, 414, 449, 537
FaqI	GGGAC	2 cut(s)	59, 506
FatI	CATG	4 cut(s)	210, 243, 357, 447
FauI	CCCGC	7 cut(s)	29, 42, 134, 159, 165, 230, 305
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	6 cut(s)	177, 226, 229, 265, 294, 547
FokI	GGATG	1 cut(s)	11
FriOI	GRGCYC	2 cut(s)	55, 223
Fsp4HI	GCNGC	6 cut(s)	177, 226, 229, 265, 294, 547
GlaI	GCGC	2 cut(s)	268, 611
GluI	GCNGC	6 cut(s)	177, 226, 229, 265, 294, 547
GsaI	CCCAGC	2 cut(s)	49, 339
GsuI	CTGGAG	2 cut(s)	17, 569
HapII	CCGG	7 cut(s)	102, 113, 161, 288, 331, 369, 607
HhaI	GCGC	2 cut(s)	269, 612
Hin1II	CATG	4 cut(s)	214, 247, 361, 451
Hin6I	GCGC	2 cut(s)	267, 610
HinP1I	GCGC	2 cut(s)	267, 610
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	7 cut(s)	102, 113, 161, 288, 331, 369, 607
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	202, 633
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	4 cut(s)	187, 193, 211, 274
Hpy8I	GTNNAC	2 cut(s)	202, 633
Hpy99I	CGWCG	3 cut(s)	206, 275, 368
HpyAV	CCTTC	4 cut(s)	150, 190, 259, 590
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	283, 357, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 122, 261, 266
HpyF3I	CTNAG	2 cut(s)	426, 561
Hsp92II	CATG	4 cut(s)	214, 247, 361, 451
HspAI	GCGC	2 cut(s)	267, 610
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	189, 205, 360, 516, 600
LmnI	GCTCC	2 cut(s)	110, 290
Lsp1109I	GCAGC	2 cut(s)	251, 533
LweI	GCATC	3 cut(s)	33, 270, 330
MaeIII	GTNAC	2 cut(s)	473, 509
MalI	GATC	5 cut(s)	191, 207, 362, 518, 602
MboI	GATC	5 cut(s)	189, 205, 360, 516, 600
MboII	GAAGA	3 cut(s)	319, 607, 610
MhlI	GDGCHC	3 cut(s)	22, 55, 223
MroNI	GCCGGC	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	2 cut(s)	49, 228
MspI	CCGG	7 cut(s)	102, 113, 161, 288, 331, 369, 607
MspR9I	CCNGG	2 cut(s)	162, 543
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	50, 122, 261, 266
NaeI	GCCGGC	1 cut(s)	370
NciI	CCSGG	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	5 cut(s)	189, 205, 360, 516, 600
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	4 cut(s)	214, 247, 361, 451
NlaIV	GGNNCC	5 cut(s)	53, 106, 221, 292, 393
NmeAIII	GCCGAG	3 cut(s)	20, 205, 456
NmuCI	GTSAC	1 cut(s)	509
PagI	TCATGA	1 cut(s)	210
PdiI	GCCGGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	6 cut(s)	178, 227, 230, 266, 295, 548
Psp6I	CCWGG	1 cut(s)	541
PspFI	CCCAGC	2 cut(s)	45, 335
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	5 cut(s)	53, 106, 221, 292, 393
PspOMI	GGGCCC	2 cut(s)	51, 219
RseI	CAYNNNNRTG	1 cut(s)	446
SacII	CCGCGG	1 cut(s)	229
SalI	GTCGAC	1 cut(s)	200
SatI	GCNGC	6 cut(s)	177, 226, 229, 265, 294, 547
Sau3AI	GATC	5 cut(s)	189, 205, 360, 516, 600
ScrFI	CCNGG	2 cut(s)	162, 543
SduI	GDGCHC	3 cut(s)	22, 55, 223
SetI	ASST	7 cut(s)	39, 122, 201, 251, 411, 458, 591
SfaNI	GCATC	3 cut(s)	33, 270, 330
SfcI	CTRYAG	1 cut(s)	590
SfiI	GGCCNNNNNGGCC	1 cut(s)	50
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	633
SmiMI	CAYNNNNRTG	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	160, 541
StyI	CCWWGG	2 cut(s)	171, 447
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	3 cut(s)	194, 201, 273
TauI	GCSGC	4 cut(s)	179, 228, 231, 296
TfiI	GAWTC	1 cut(s)	315
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	2 cut(s)	264, 546
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	633
XagI	CCTNNNNNAGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.