Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013207

Physical Location & Seq

Genomic Coordinates Forward (+)

3382957 .. 3384822

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1044100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTCTGCTGACCCGAGCCCGCATCCCTCTCCAGCTCTCGGCCCAGCGGGCCCTCTCTCTCCACACCACCGTCCCCTCCCTCTCGTCCTCCGCCCCCTCCGGCTCCACTCCCGCCACCTATGCCCGCCCTCCTCCCCCTTCCGCCTCCCCGCCCCCTCCTGGCCTCTCTAAGGCCGCCGAGTTCGTGATCTCGAAGGTCGACGATCTCATGAACTGGGCCCGCCGCGGCTCCATCTGGCCAATGACCTTCGGCCTCGCCTGCTGCGCCGTCGAGATGATGCACACCGGAGCTGCCCGCTACGATTTGGACCGATTCGGCATCATTTTCCGGCCCAGTCCTCGCCAGTCCGATTGCATGATCGTCGCCGGCACTCTCACCAACAAGATGGCACCCGCTCTCCGCAAGGTTTATGACCAAATGCCTGAGCCGAGATGGGTCATCTCCATGGGAAGCTGTGCAAATGGAGGTGGTTACTACCATTACTCCTATTCTGTTGTTAGGGGTTGTGACAGGATCGTACCCGTTGATATCTATGTTCCAGGCTGCCCTCCCACCGCCGAAGCCCTACTCTATGGCCTTCTCCAGCTGCAGAAGAAAATCAACCGGCGCAAGGATTTCCTCCTTTGGTGGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008270 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Oxidored_q6

Protein Analysis

214

Amino Acids

23.45

Weight (kDa)

9.63

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_q6	PF01058	88 - 197	4e-28	NADH ubiquinone oxidoreductase, 20 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11770
fragaria_vesca	FvH4_2g32100
malus_domestica	MD08G1044100.v1.1 MD15G1061400.v1.1
prunus_persica	Prupe.1G414100_v2.0.a1
pyrus_communis	pycom08g03560
rosa_chinensis	RchiOBHm_Chr3g0475351 RchiOBHm_Chr6g0310641
rosa_laevigata	RLG00000010470
rosa_multiflora	Rmu_sc0005386.1_g000005 Rmu_sc0007390.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158390
rosa_rugosa	Rorug06G0381800
rosa_samantha	Rh6AG495800 Rh6BG505300 Rh6CG510900 Rh6DG496700
rosa_wichuraiana	Rw6G043110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	391
AccBSI	CCGCTC	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	228
AclWI	GGATC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	239
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	4 cut(s)	40, 161, 172, 613
AjnI	CCWGG	2 cut(s)	160, 541
AluBI	AGCT	4 cut(s)	37, 293, 456, 589
AluI	AGCT	4 cut(s)	37, 293, 456, 589
AlwI	GGATC	1 cut(s)	524
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	9 cut(s)	42, 51, 163, 174, 219, 239, 253, 332, 577
ApaI	GGGCCC	2 cut(s)	55, 223
ApeKI	GCWGC	4 cut(s)	264, 293, 546, 589
AspLEI	GCGC	2 cut(s)	269, 612
AspS9I	GGNCC	8 cut(s)	43, 51, 52, 219, 220, 310, 333, 633
AsuHPI	GGTGA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	2 cut(s)	310, 633
BaeGI	GKGCMC	2 cut(s)	55, 223
BalI	TGGCCA	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	391
BanII	GRGCYC	3 cut(s)	22, 55, 223
BbvI	GCAGC	4 cut(s)	251, 280, 533, 576
BccI	CCATC	3 cut(s)	242, 382, 429
BceAI	ACGGC	1 cut(s)	254
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	2 cut(s)	162, 543
BfmI	CTRYAG	1 cut(s)	590
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	7 cut(s)	177, 226, 229, 265, 294, 547, 590
BlsI	GCNGC	7 cut(s)	178, 227, 230, 266, 295, 548, 591
Bme1390I	CCNGG	2 cut(s)	162, 543
Bme18I	GGWCC	2 cut(s)	310, 633
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	8 cut(s)	43, 51, 52, 219, 220, 310, 333, 633
BmiI	GGNNCC	5 cut(s)	53, 106, 221, 232, 393
BmrFI	CCNGG	2 cut(s)	162, 543
BmrI	ACTGGG	2 cut(s)	226, 330
BmsI	GCATC	3 cut(s)	33, 270, 330
BmuI	ACTGGG	2 cut(s)	226, 330
BpmI	CTGGAG	2 cut(s)	17, 569
Bpu10I	CCTNAGC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	226, 447
BsaWI	WCCGGW	1 cut(s)	287
BsaXI	ACNNNNNCTCC	4 cut(s)	384, 414, 470, 500
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 161, 172, 613
Bse118I	RCCGGY	2 cut(s)	368, 606
Bse1I	ACTGG	3 cut(s)	221, 336, 346
BseBI	CCWGG	2 cut(s)	162, 543
BseDI	CCNNGG	2 cut(s)	226, 447
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	4 cut(s)	40, 161, 172, 613
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	3 cut(s)	221, 336, 346
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	2 cut(s)	55, 223
BseXI	GCAGC	4 cut(s)	251, 280, 533, 576
BseYI	CCCAGC	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	9 cut(s)	44, 53, 165, 176, 221, 241, 255, 334, 579
BshNI	GGYRCC	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	5 cut(s)	102, 288, 331, 369, 607
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	4 cut(s)	40, 161, 172, 613
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	9 cut(s)	44, 53, 165, 176, 221, 241, 255, 334, 579
BsoBI	CYCGRG	1 cut(s)	15
Bsp120I	GGGCCC	2 cut(s)	51, 219
Bsp1286I	GDGCHC	3 cut(s)	22, 55, 223
Bsp143I	GATC	4 cut(s)	189, 205, 360, 516
Bsp19I	CCATGG	1 cut(s)	447
BspANI	GGCC	9 cut(s)	44, 53, 165, 176, 221, 241, 255, 334, 579
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	5 cut(s)	53, 106, 221, 232, 393
BspMAI	CTGCAG	1 cut(s)	594
BspPI	GGATC	1 cut(s)	524
BspT107I	GGYRCC	1 cut(s)	391
BsrBI	CCGCTC	1 cut(s)	398
BsrFI	RCCGGY	2 cut(s)	368, 606
BsrI	ACTGG	3 cut(s)	221, 336, 346
BssAI	RCCGGY	2 cut(s)	368, 606
BssECI	CCNNGG	2 cut(s)	226, 447
BssMI	GATC	4 cut(s)	189, 205, 360, 516
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	162, 543
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	7 cut(s)	22, 51, 127, 223, 262, 298, 370
BstDEI	CTNAG	2 cut(s)	171, 426
BstDSI	CCRYGG	2 cut(s)	226, 447
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	269, 612
BstKTI	GATC	4 cut(s)	192, 208, 363, 519
BstMBI	GATC	4 cut(s)	189, 205, 360, 516
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 122, 261, 266
BstNI	CCWGG	2 cut(s)	162, 543
BstSCI	CCNGG	2 cut(s)	160, 541
BstSFI	CTRYAG	1 cut(s)	590
BstSLI	GKGCMC	2 cut(s)	55, 223
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	251, 280, 533, 576
BstXI	CCANNNNNNTGG	1 cut(s)	388
BsuRI	GGCC	9 cut(s)	44, 53, 165, 176, 221, 241, 255, 334, 579
BtgI	CCRYGG	2 cut(s)	226, 447
BtsCI	GGATG	1 cut(s)	24
Cac8I	GCNNGC	7 cut(s)	22, 51, 127, 223, 262, 298, 370
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	2 cut(s)	269, 612
Cfr10I	RCCGGY	2 cut(s)	368, 606
Cfr13I	GGNCC	8 cut(s)	43, 51, 52, 219, 220, 310, 333, 633
Cfr42I	CCGCGG	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	3 cut(s)	211, 358, 448
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	2 cut(s)	171, 426
DpnI	GATC	4 cut(s)	191, 207, 362, 518
DpnII	GATC	4 cut(s)	189, 205, 360, 516
EaeI	YGGCCR	1 cut(s)	239
EciI	GGCGGA	2 cut(s)	82, 133
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	3 cut(s)	22, 55, 223
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	2 cut(s)	310, 633
Eco88I	CYCGRG	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	160, 541
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	3 cut(s)	22, 55, 223
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	214, 361, 451
FaiI	YATR	7 cut(s)	123, 212, 359, 414, 449, 537, 576
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	210, 357, 447
FauI	CCCGC	8 cut(s)	29, 42, 121, 134, 159, 230, 305, 403
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	7 cut(s)	177, 226, 229, 265, 294, 547, 590
FokI	GGATG	1 cut(s)	11
FriOI	GRGCYC	3 cut(s)	22, 55, 223
Fsp4HI	GCNGC	7 cut(s)	177, 226, 229, 265, 294, 547, 590
GlaI	GCGC	2 cut(s)	268, 611
GluI	GCNGC	7 cut(s)	177, 226, 229, 265, 294, 547, 590
GsaI	CCCAGC	1 cut(s)	49
GsuI	CTGGAG	2 cut(s)	17, 569
HaeIII	GGCC	9 cut(s)	44, 53, 165, 176, 221, 241, 255, 334, 579
HapII	CCGG	5 cut(s)	102, 288, 331, 369, 607
HhaI	GCGC	2 cut(s)	269, 612
Hin1II	CATG	3 cut(s)	214, 361, 451
Hin6I	GCGC	2 cut(s)	267, 610
HinP1I	GCGC	2 cut(s)	267, 610
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	5 cut(s)	102, 288, 331, 369, 607
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	202, 633
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	4 cut(s)	187, 193, 211, 274
Hpy8I	GTNNAC	2 cut(s)	202, 633
Hpy99I	CGWCG	3 cut(s)	206, 275, 368
HpyAV	CCTTC	4 cut(s)	150, 190, 259, 590
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	4 cut(s)	283, 357, 461, 592
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 122, 261, 266
HpyF3I	CTNAG	2 cut(s)	171, 426
Hsp92II	CATG	3 cut(s)	214, 361, 451
HspAI	GCGC	2 cut(s)	267, 610
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	189, 205, 360, 516
LmnI	GCTCC	3 cut(s)	110, 236, 290
Lsp1109I	GCAGC	4 cut(s)	251, 280, 533, 576
LweI	GCATC	3 cut(s)	33, 270, 330
MaeIII	GTNAC	2 cut(s)	473, 509
MalI	GATC	4 cut(s)	191, 207, 362, 518
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	4 cut(s)	189, 205, 360, 516
MboII	GAAGA	1 cut(s)	607
MhlI	GDGCHC	3 cut(s)	22, 55, 223
MlsI	TGGCCA	1 cut(s)	241
MluNI	TGGCCA	1 cut(s)	241
Mox20I	TGGCCA	1 cut(s)	241
MroNI	GCCGGC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	241
MslI	CAYNNNNRTG	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	241
MspA1I	CMGCKG	3 cut(s)	49, 228, 589
MspI	CCGG	5 cut(s)	102, 288, 331, 369, 607
MspR9I	CCNGG	2 cut(s)	162, 543
MvaI	CCWGG	2 cut(s)	162, 543
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	50, 122, 261, 266
NaeI	GCCGGC	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	4 cut(s)	189, 205, 360, 516
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	3 cut(s)	214, 361, 451
NlaIV	GGNNCC	5 cut(s)	53, 106, 221, 232, 393
NmeAIII	GCCGAG	3 cut(s)	20, 205, 456
NmuCI	GTSAC	1 cut(s)	509
PagI	TCATGA	1 cut(s)	210
PdiI	GCCGGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	7 cut(s)	178, 227, 230, 266, 295, 548, 591
Psp6I	CCWGG	2 cut(s)	160, 541
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	2 cut(s)	160, 541
PspN4I	GGNNCC	5 cut(s)	53, 106, 221, 232, 393
PspOMI	GGGCCC	2 cut(s)	51, 219
PspPI	GGNCC	8 cut(s)	43, 51, 52, 219, 220, 310, 333, 633
PstI	CTGCAG	1 cut(s)	594
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	446
SacII	CCGCGG	1 cut(s)	229
SalI	GTCGAC	1 cut(s)	200
SatI	GCNGC	7 cut(s)	177, 226, 229, 265, 294, 547, 590
Sau3AI	GATC	4 cut(s)	189, 205, 360, 516
Sau96I	GGNCC	8 cut(s)	43, 51, 52, 219, 220, 310, 333, 633
ScrFI	CCNGG	2 cut(s)	162, 543
SduI	GDGCHC	3 cut(s)	22, 55, 223
SetI	ASST	9 cut(s)	39, 122, 201, 251, 295, 411, 458, 472, 591
SfaNI	GCATC	3 cut(s)	33, 270, 330
SfcI	CTRYAG	1 cut(s)	590
SfiI	GGCCNNNNNGGCC	1 cut(s)	50
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	2 cut(s)	310, 633
SmiMI	CAYNNNNRTG	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	160, 541
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	3 cut(s)	194, 201, 273
TaqII	GACCGA	1 cut(s)	327
TauI	GCSGC	3 cut(s)	179, 228, 231
TfiI	GAWTC	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	4 cut(s)	264, 293, 546, 589
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	310, 633
XagI	CCTNNNNNAGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.