Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016181

Physical Location & Seq

Genomic Coordinates Forward (+)

3833919 .. 3836359

Gene Structure 2441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCAGAGAAGCTTGAGCCGGTGAAGGTTTTGTACTGCGGAGTTTGCTCTCTTCCAGCGGAATACTGCGAATTCGGTCCCGATTTCGCTAGATGTAAGCCCTGGCTCGTCGAAAACGCCCCAGATCTCTATCCTGATCTCCTCAAAGAAGCAAATGAGAAGGCAGCAGATAATGTTTCTGACAAACTCCAGTCGGTGGGAATCTCTTCAGGTGGTGCTGATGGGGCACCATCTTCAGCTCAGACTGGAGGGACATCCAAGAAGGAGGAAGTGAAGCGCCTACCTGGGGGGAAAGTTAAAAAGAAAGATCGACAGGAAGTTATCATTGAAAAGGTTGTACGCAACAAACGCAAGTGTATCACCATTGTGAAAGGACTAGAACTGTTTGGGATAAAACTCAGTGATGCCTCTAAAAAGCTTGGTAAGAAGTTTGCCACTGGAGCATCAGTTGTCAAGGGACCAACTGAAAAGGAGCAAATTGATGTTCAAGGGGATATAATCTATGATATCGTTGAATTCATTACAGACACTTGGCCCGACGTACCTGAAAGATCCATTTTCTTCATCGAAGATGGGAAGAAGGTTCAGGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0002190 GO:0002192 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0065003 GO:0070992 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0110017 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SUI1

Protein Analysis

198

Amino Acids

21.59

Weight (kDa)

7.51

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DENR_N	PF21023	10 - 45	1e-19	DENR, N-terminal
SUI1	PF01253	105 - 176	6.6e-21	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11900
fragaria_vesca	FvH4_1g07600
malus_domestica	MD02G1080600.v1.1 MD15G1208100.v1.1
prunus_persica	Prupe.7G208600_v2.0.a1
pyrus_communis	pycom02g06390 pycom15g18430
rosa_chinensis	RchiOBHm_Chr2g0093471
rosa_laevigata	RLG00000016409
rosa_multiflora	Rmu_sc0004086.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148060
rosa_rugosa	Rorug02G0036700
rosa_samantha	Rh2BG083700 Rh2DG081800
rosa_wichuraiana	Rw2G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	196
AciI	CCGC	2 cut(s)	39, 59
AclWI	GGATC	1 cut(s)	546
AcsI	RAATTY	2 cut(s)	71, 515
AcuI	CTGAAG	2 cut(s)	192, 219
AfaI	GTAC	3 cut(s)	35, 339, 543
AfiI	CCNNNNNNNGG	2 cut(s)	196, 286
AgsI	TTSAA	3 cut(s)	329, 488, 515
AjnI	CCWGG	2 cut(s)	101, 283
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	3 cut(s)	13, 239, 418
AluI	AGCT	3 cut(s)	13, 239, 418
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	71, 515
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	77, 458, 534
AsuHPI	GGTGA	2 cut(s)	34, 352
AvaII	GGWCC	2 cut(s)	77, 458
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	226
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	3 cut(s)	215, 238, 566
BciT130I	CCWGG	2 cut(s)	103, 285
BfaI	CTAG	2 cut(s)	90, 377
BfoI	RGCGCY	1 cut(s)	280
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	103, 285
Bme18I	GGWCC	2 cut(s)	77, 458
BmgT120I	GGNCC	3 cut(s)	77, 458, 534
BmiI	GGNNCC	3 cut(s)	79, 228, 459
BmrFI	CCNGG	2 cut(s)	103, 285
BmsI	GCATC	2 cut(s)	394, 452
BpmI	CTGGAG	3 cut(s)	173, 267, 459
BpuEI	CTTGAG	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	101, 284
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 286
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	3 cut(s)	190, 250, 442
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	103, 285
BseDI	CCNNGG	2 cut(s)	101, 284
BseGI	GGATG	1 cut(s)	254
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	196, 286
BseMII	CTCAG	2 cut(s)	254, 412
BseNI	ACTGG	3 cut(s)	190, 250, 442
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	176
BshFI	GGCC	1 cut(s)	535
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	3 cut(s)	63, 265, 471
BslI	CCNNNNNNNGG	2 cut(s)	196, 286
BsmFI	GGGAC	3 cut(s)	63, 265, 471
BsnI	GGCC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	124, 136, 307, 551
BspACI	CCGC	2 cut(s)	39, 59
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	2 cut(s)	253, 411
BspLI	GGNNCC	3 cut(s)	79, 228, 459
BspPI	GGATC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	190, 250, 442
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	101, 284
BssMI	GATC	4 cut(s)	124, 136, 307, 551
Bst2UI	CCWGG	2 cut(s)	103, 285
Bst4CI	ACNGT	1 cut(s)	384
Bst6I	CTCTTC	2 cut(s)	57, 211
BstDEI	CTNAG	2 cut(s)	240, 398
BstF5I	GGATG	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	4 cut(s)	127, 139, 310, 554
BstMBI	GATC	4 cut(s)	124, 136, 307, 551
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 224, 348, 440
BstNI	CCWGG	2 cut(s)	103, 285
BstSCI	CCNGG	2 cut(s)	101, 283
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	2 cut(s)	124, 551
BstYI	RGATCY	2 cut(s)	124, 551
BsuRI	GGCC	1 cut(s)	535
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	2 cut(s)	406, 435
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	3 cut(s)	77, 458, 534
Csp6I	GTAC	3 cut(s)	34, 338, 542
CviJI	RGCY	8 cut(s)	13, 19, 100, 106, 239, 418, 535, 590
CviKI_1	RGCY	8 cut(s)	13, 19, 100, 106, 239, 418, 535, 590
CviQI	GTAC	3 cut(s)	34, 338, 542
DdeI	CTNAG	2 cut(s)	240, 398
DpnI	GATC	4 cut(s)	126, 138, 309, 553
DpnII	GATC	4 cut(s)	124, 136, 307, 551
Eam1104I	CTCTTC	2 cut(s)	57, 211
EarI	CTCTTC	2 cut(s)	57, 211
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	2 cut(s)	77, 458
Eco57I	CTGAAG	2 cut(s)	192, 219
EcoRI	GAATTC	2 cut(s)	71, 515
EcoRII	CCWGG	2 cut(s)	101, 283
EcoRV	GATATC	1 cut(s)	508
FaiI	YATR	2 cut(s)	497, 504
FaqI	GGGAC	3 cut(s)	63, 265, 471
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	90, 377
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	165
GsuI	CTGGAG	3 cut(s)	173, 267, 459
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	535
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HindIII	AAGCTT	2 cut(s)	11, 416
HinfI	GANTC	1 cut(s)	201
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	34, 352
Hpy188I	TCNGA	2 cut(s)	181, 243
Hpy188III	TCNNGA	2 cut(s)	80, 134
Hpy99I	CGWCG	2 cut(s)	113, 542
HpyAV	CCTTC	4 cut(s)	19, 154, 256, 574
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4IV	ACGT	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 224, 348, 440
HpyF3I	CTNAG	2 cut(s)	240, 398
HpySE526I	ACGT	1 cut(s)	540
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	124, 136, 307, 551
LmnI	GCTCC	2 cut(s)	440, 472
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	2 cut(s)	394, 452
MaeI	CTAG	2 cut(s)	90, 377
MaeII	ACGT	1 cut(s)	540
MalI	GATC	4 cut(s)	126, 138, 309, 553
MboI	GATC	4 cut(s)	124, 136, 307, 551
MboII	GAAGA	6 cut(s)	44, 198, 225, 553, 581, 589
MflI	RGATCY	2 cut(s)	124, 551
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	3 cut(s)	71, 477, 515
MnlI	CCTC	4 cut(s)	152, 242, 259, 418
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	103, 285
MvaI	CCWGG	2 cut(s)	103, 285
MwoI	GCNNNNNNNGC	4 cut(s)	45, 224, 348, 440
NdeII	GATC	4 cut(s)	124, 136, 307, 551
NlaIV	GGNNCC	3 cut(s)	79, 228, 459
OliI	CACNNNNGTG	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	201
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	101, 283
PspGI	CCWGG	2 cut(s)	101, 283
PspN4I	GGNNCC	3 cut(s)	79, 228, 459
PspPI	GGNCC	3 cut(s)	77, 458, 534
PsuI	RGATCY	2 cut(s)	124, 551
RsaI	GTAC	3 cut(s)	35, 339, 543
RsaNI	GTAC	3 cut(s)	34, 338, 542
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	4 cut(s)	124, 136, 307, 551
Sau96I	GGNCC	3 cut(s)	77, 458, 534
ScrFI	CCNGG	2 cut(s)	103, 285
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	2 cut(s)	394, 452
SinI	GGWCC	2 cut(s)	77, 458
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	71, 477, 515
SsiI	CCGC	2 cut(s)	39, 59
SspMI	CTAG	2 cut(s)	90, 377
StyD4I	CCNGG	2 cut(s)	101, 283
TaaI	ACNGT	1 cut(s)	384
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	3 cut(s)	111, 310, 567
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	3 cut(s)	71, 477, 515
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	2 cut(s)	406, 442
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	508, 553
TspRI	CASTG	2 cut(s)	406, 442
Van91I	CCANNNNNTGG	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	77, 458
XapI	RAATTY	2 cut(s)	71, 515
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	2 cut(s)	90, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.