Prupe.7G208600_v2.0.a1

Translation machinery-associated protein 22

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016181
Physical Location & Seq
Reverse (-)
19142635 .. 19145599
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G208600.1

Sequence Viewer

Length: 579 bp
ATGGCGGGAAAACCCCAACCGGTTCGCGTACTGTATTGTGCGGTGTGCAGTTTGCCTGCAGAGTACTGTGAATTCGGGCCCGATTTCGAGAAATGCAAGCCCTGGTTGATCCAAAACGCCCCAGACCTTTACCCGGATCTCGTTAAAGAGGCTAATGCGAAGGAAGCTGATAAAGTAGCCAACCAGTTGCAGTCTACTGGTATATCTTCTGGTGGAGATGGAGCTGCTTCTTCAGCACCTAAGCAAGAAGAAGTCAAGCGTCTTCCAGGCGGGAAGATTAAGAAAAAGGAGAGGCAAGAAGTTACTATTGAAAAGATGACGCGTAATAAGCGAAAATGTATCACCACTGTGAAAGGGCTGGAACTTTTTGGTGTCAAACTTAGTGATGCTTCAAAGAAATTGGGGAAAAAGTTTGCCACAGGAGCCTCTGTTGTTAAGGGGCCAACTGAGAAGGACCAAATTGATGTTCAAGGGGATATAGCCTATGACATTGTGGAGTTTATTACAGATACCTGGCCTGATGTCCCAGAAGCTGCAATTTTCTTTATAGAAGATGGCAGAAAGGTCCCAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SUI1

Protein Analysis

193

Amino Acids

20.92

Weight (kDa)

8.18

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016181)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11900
fragaria_vesca FvH4_1g07600
malus_domestica MD02G1080600.v1.1 MD15G1208100.v1.1
prunus_persica Prupe.7G208600_v2.0.a1
pyrus_communis pycom02g06390 pycom15g18430
rosa_chinensis RchiOBHm_Chr2g0093471
rosa_laevigata RLG00000016409
rosa_multiflora Rmu_sc0004086.1_g000002
rosa_roxburghii Rroxscaffold_2G00148060
rosa_rugosa Rorug02G0036700
rosa_samantha Rh2BG083700 Rh2DG081800
rosa_wichuraiana Rw2G006440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AccII CGCG 2 cut(s) 27, 322
AciI CCGC 3 cut(s) 5, 41, 270
AclWI GGATC 2 cut(s) 103, 144
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 2 cut(s) 30, 65
AfiI CCNNNNNNNGG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 320
AgeI ACCGGT 1 cut(s) 19
AgsI TTSAA 3 cut(s) 311, 393, 470
AjnI CCWGG 3 cut(s) 101, 265, 512
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 4 cut(s) 167, 224, 533, 572
AluI AGCT 4 cut(s) 167, 224, 533, 572
AlwI GGATC 2 cut(s) 103, 144
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 3 cut(s) 77, 440, 515
ApaI GGGCCC 1 cut(s) 81
ApeKI GCWGC 3 cut(s) 224, 533, 572
ApoI RAATTY 1 cut(s) 71
AsiGI ACCGGT 1 cut(s) 19
AspS9I GGNCC 5 cut(s) 77, 78, 440, 454, 565
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 2 cut(s) 454, 565
BaeGI GKGCMC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 3 cut(s) 211, 520, 559
BccI CCATC 2 cut(s) 212, 548
BciT130I CCWGG 3 cut(s) 103, 267, 514
BcnI CCSGG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 3 cut(s) 225, 534, 573
BlsI GCNGC 3 cut(s) 226, 535, 574
BmcAI AGTACT 1 cut(s) 65
Bme1390I CCNGG 4 cut(s) 103, 134, 267, 514
Bme18I GGWCC 2 cut(s) 454, 565
BmgT120I GGNCC 5 cut(s) 77, 78, 440, 454, 565
BmiI GGNNCC 4 cut(s) 79, 424, 441, 567
BmrFI CCNGG 4 cut(s) 103, 134, 267, 514
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 254
Bpu10I CCTNAGC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 2 cut(s) 184, 202
BseBI CCWGG 3 cut(s) 103, 267, 514
BseDI CCNNGG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 184, 202
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 3 cut(s) 211, 520, 559
BseYI CCCAGC 1 cut(s) 568
BsgI GTGCAG 1 cut(s) 67
Bsh1236I CGCG 2 cut(s) 27, 322
BshFI GGCC 3 cut(s) 79, 442, 517
BshTI ACCGGT 1 cut(s) 19
BsiSI CCGG 2 cut(s) 20, 134
BslFI GGGAC 2 cut(s) 509, 551
BslI CCNNNNNNNGG 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 509, 551
BsnI GGCC 3 cut(s) 79, 442, 517
Bsp120I GGGCCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 108, 136
BspACI CCGC 3 cut(s) 5, 41, 270
BspANI GGCC 3 cut(s) 79, 442, 517
BspCNI CTCAG 1 cut(s) 439
BspFNI CGCG 2 cut(s) 27, 322
BspLI GGNNCC 4 cut(s) 79, 424, 441, 567
BspMAI CTGCAG 1 cut(s) 61
BspPI GGATC 2 cut(s) 103, 144
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 2 cut(s) 184, 202
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 2 cut(s) 108, 136
Bst2UI CCWGG 3 cut(s) 103, 267, 514
Bst4CI ACNGT 3 cut(s) 33, 68, 349
BstC8I GCNNGC 2 cut(s) 57, 98
BstDEI CTNAG 3 cut(s) 240, 380, 447
BstFNI CGCG 2 cut(s) 27, 322
BstKTI GATC 2 cut(s) 111, 139
BstMBI GATC 2 cut(s) 108, 136
BstMWI GCNNNNNNNGC 4 cut(s) 164, 233, 328, 422
BstNI CCWGG 3 cut(s) 103, 267, 514
BstSCI CCNGG 4 cut(s) 101, 132, 265, 512
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 81
BstUI CGCG 2 cut(s) 27, 322
BstV1I GCAGC 3 cut(s) 211, 520, 559
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 3 cut(s) 79, 442, 517
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 57, 98
CaiI CAGNNNCTG 1 cut(s) 533
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 5 cut(s) 77, 78, 440, 454, 565
CseI GACGC 2 cut(s) 248, 328
Csp6I GTAC 2 cut(s) 29, 64
CspAI ACCGGT 1 cut(s) 19
CviQI GTAC 2 cut(s) 29, 64
DdeI CTNAG 3 cut(s) 240, 380, 447
DpnI GATC 2 cut(s) 110, 138
DpnII GATC 2 cut(s) 108, 136
Eco24I GRGCYC 1 cut(s) 81
Eco47I GGWCC 2 cut(s) 454, 565
Eco57I CTGAAG 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 3 cut(s) 101, 265, 512
EcoT38I GRGCYC 1 cut(s) 81
FaiI YATR 4 cut(s) 203, 479, 486, 548
FaqI GGGAC 2 cut(s) 509, 551
FauI CCCGC 1 cut(s) 263
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 3 cut(s) 225, 534, 573
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 3 cut(s) 225, 534, 573
GluI GCNGC 3 cut(s) 225, 534, 573
GsaI CCCAGC 1 cut(s) 572
HaeIII GGCC 3 cut(s) 79, 442, 517
HapII CCGG 2 cut(s) 20, 134
HgaI GACGC 2 cut(s) 248, 328
HpaII CCGG 2 cut(s) 20, 134
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 154, 445
HpyCH4III ACNGT 3 cut(s) 33, 68, 349
HpyCH4V TGCA 5 cut(s) 48, 59, 96, 190, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 233, 328, 422
HpyF3I CTNAG 3 cut(s) 240, 380, 447
Kzo9I GATC 2 cut(s) 108, 136
LmnI GCTCC 2 cut(s) 221, 422
Lsp1109I GCAGC 3 cut(s) 211, 520, 559
LweI GCATC 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 110, 138
MboI GATC 2 cut(s) 108, 136
MboII GAAGA 6 cut(s) 198, 222, 254, 260, 286, 563
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 4 cut(s) 71, 398, 459, 537
MluI ACGCGT 1 cut(s) 320
MnlI CCTC 3 cut(s) 142, 285, 436
MseI TTAA 3 cut(s) 144, 279, 435
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 2 cut(s) 20, 134
MspR9I CCNGG 4 cut(s) 103, 134, 267, 514
MvaI CCWGG 3 cut(s) 103, 267, 514
MvnI CGCG 2 cut(s) 27, 322
MwoI GCNNNNNNNGC 4 cut(s) 164, 233, 328, 422
NciI CCSGG 1 cut(s) 134
NdeII GATC 2 cut(s) 108, 136
NlaIV GGNNCC 4 cut(s) 79, 424, 441, 567
OliI CACNNNNGTG 1 cut(s) 347
PinAI ACCGGT 1 cut(s) 19
PkrI GCNGC 3 cut(s) 226, 535, 574
PpuMI RGGWCCY 1 cut(s) 565
Psp5II RGGWCCY 1 cut(s) 565
Psp6I CCWGG 3 cut(s) 101, 265, 512
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 3 cut(s) 101, 265, 512
PspN4I GGNNCC 4 cut(s) 79, 424, 441, 567
PspOMI GGGCCC 1 cut(s) 77
PspPI GGNCC 5 cut(s) 77, 78, 440, 454, 565
PspPPI RGGWCCY 1 cut(s) 565
PstI CTGCAG 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 2 cut(s) 30, 65
RsaNI GTAC 2 cut(s) 29, 64
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 3 cut(s) 144, 279, 435
SatI GCNGC 3 cut(s) 225, 534, 573
Sau3AI GATC 2 cut(s) 108, 136
Sau96I GGNCC 5 cut(s) 77, 78, 440, 454, 565
ScaI AGTACT 1 cut(s) 65
ScrFI CCNGG 4 cut(s) 103, 134, 267, 514
SduI GDGCHC 1 cut(s) 81
SetI ASST 8 cut(s) 129, 169, 226, 241, 515, 535, 567, 574
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 2 cut(s) 454, 565
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 4 cut(s) 71, 398, 459, 537
SsiI CCGC 3 cut(s) 5, 41, 270
StyD4I CCNGG 4 cut(s) 101, 132, 265, 512
TaaI ACNGT 3 cut(s) 33, 68, 349
TaqI TCGA 1 cut(s) 87
TasI AATT 4 cut(s) 71, 398, 459, 537
TatI WGTACW 1 cut(s) 63
Tru1I TTAA 3 cut(s) 144, 279, 435
Tru9I TTAA 3 cut(s) 144, 279, 435
TscAI CASTG 1 cut(s) 352
TseI GCWGC 3 cut(s) 224, 533, 572
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 2 cut(s) 454, 565
XapI RAATTY 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.