Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013976

Physical Location & Seq

Genomic Coordinates Reverse (-)

2887530 .. 2889839

Gene Structure 2310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0036700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAATTTTTCTGATCAAACATCGTTTATGCCGGTCCAATCACTTTATGTTGGAGGCAGTGATGCTGTTAATTGCTGGCCTCCTTTCCCTATGAACAATGAAGATCACCATTCTCAGTTTGAGCAGCAAGCTCCACCCTTTAAAAGACCTCGAAATTCCGAAGAACCCCAATCAAATCCGATGCCATACCCGCCTATGAACAACTCTAGAGTGCACCCACCGAATGCTCCGGTTAATAGAGGAGCAAACAACATTTTTTACAAGACTCGTCTGTGTGCAAATTTTAAGAATGGTTCCTGTAGGAATGGTGAGAATTGCAACTATGCACATGGCATTGAAGACATTCGCCAGCCGCCTCCCAATTGGCAAGAGCTTGTCACAGTGCGCGACGAGGATAGGCCATTAACCGGTAATTGGGAGGATGATCAGAAGATAATTCACAGGATGAAGCTGTGCAAGAAGTTTAATAATGGCGAGGAGTGTCCTTATGGAGATAGGTGTAACTTTCTTCATGAAGAACCGGCAAAGTTTAGGGAGGATTCGGGTAGGTATAGGGAGAACGCAGCAATCAGCATTGGGACTACAGGAGCACCAATGACACATGTGAGTAGCACTAATCATTCCGAGGATAATAGGCCTGCGAACACTGGTATGGATGCATTTCGAGTAAACATGAAGCCAGTTTATTGGAAGACTAAGATATGTAATAAGTGGGAGCAAACAGGAAAATGTCCGTTTGGCGAGAAGTGTCACTTTGCTCATGGGCAAGCAGAGTTACAAGTGCCTGGGGTGCGGGTTGAAGCAGAAGTGATGACAAGTGCTCCCATTTCAACGAAGCCACAAACTGTTCCCGCGAATGATTCATCTACAATTGCAATGGCAGCAATTCCTGCTGCTGTAAACGAAGAAGTTCAGGGTAAGAAGTGCGGATTTAAATGGAGAGGATCCAAGAAGATCAATCAAATCAATCGCATATATGGTGACTGGCTTGATGATGTCCCGCTGGTGGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0002190 GO:0002192 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0065003 GO:0070992 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0110017 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SUI1

Protein Analysis

338

Amino Acids

38.2

Weight (kDa)

6.79

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_UNK	PF25427	86 - 118	8.7e-07	UNK-like, CCCH zinc finger
zf-CCCH	PF00642	87 - 111	1.5e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	149 - 172	1.3e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	150 - 171	1.1e-06	CCCH-type zinc finger
zf-CCCH	PF00642	230 - 256	1.9e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	231 - 254	1.2e-06	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56970 AT5G56970
fragaria_vesca	FvH4_1g07620
malus_domestica	MD15G1208300.v1.1
prunus_persica	Prupe.7G208400_v2.0.a1 Prupe.7G208400_v2.0.a1
pyrus_communis	pycom15g18450
rosa_chinensis	RchiOBHm_Chr2g0093491
rosa_laevigata	RLG00000016411
rosa_multiflora	Rmu_sc0004423.1_g000008
rosa_roxburghii	Rroxscaffold_2G00148040
rosa_rugosa	Rorug02G0036700
rosa_samantha	Rh2AG083200 Rh2BG083900 Rh2CG085900 Rh2DG082000
rosa_wichuraiana	Rw2G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	387, 854
AciI	CCGC	6 cut(s)	191, 353, 793, 852, 927, 1001
AclWI	GGATC	2 cut(s)	939, 952
AcsI	RAATTY	3 cut(s)	4, 154, 280
AfiI	CCNNNNNNNGG	3 cut(s)	407, 414, 1006
AflIII	ACRYGT	1 cut(s)	601
AgeI	ACCGGT	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	338, 800, 831
AjnI	CCWGG	1 cut(s)	784
AluBI	AGCT	4 cut(s)	131, 373, 451, 1014
AluI	AGCT	4 cut(s)	131, 373, 451, 1014
Alw21I	GWGCWC	3 cut(s)	216, 592, 823
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	939, 952
AoxI	GGCC	3 cut(s)	77, 398, 635
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	4 cut(s)	124, 563, 881, 893
ApoI	RAATTY	3 cut(s)	4, 154, 280
AsiGI	ACCGGT	1 cut(s)	407
Asp700I	GAANNNNTTC	2 cut(s)	342, 909
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	98, 320, 992
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	944
BbsI	GAAGAC	2 cut(s)	345, 698
Bbv12I	GWGCWC	3 cut(s)	216, 592, 823
BbvI	GCAGC	4 cut(s)	136, 575, 880, 893
BciT130I	CCWGG	1 cut(s)	786
BclI	TGATCA	2 cut(s)	13, 424
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	2 cut(s)	298, 582
BisI	GCNGC	5 cut(s)	125, 353, 564, 882, 894
BlsI	GCNGC	5 cut(s)	126, 354, 565, 883, 895
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	295, 946
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	3 cut(s)	52, 171, 646
BpiI	GAAGAC	2 cut(s)	345, 698
BsaJI	CCNNGG	2 cut(s)	624, 785
BsaWI	WCCGGW	2 cut(s)	229, 407
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	3 cut(s)	407, 414, 1006
Bse118I	RCCGGY	3 cut(s)	31, 407, 520
Bse1I	ACTGG	3 cut(s)	652, 680, 989
Bse3DI	GCAATG	1 cut(s)	882
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	624, 785
BseGI	GGATG	3 cut(s)	427, 450, 661
BseLI	CCNNNNNNNGG	3 cut(s)	407, 414, 1006
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	3 cut(s)	652, 680, 989
BseRI	GAGGAG	2 cut(s)	255, 491
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	4 cut(s)	136, 575, 880, 893
Bsh1236I	CGCG	2 cut(s)	387, 854
BshFI	GGCC	3 cut(s)	79, 400, 637
BshTI	ACCGGT	1 cut(s)	407
BsiHKAI	GWGCWC	3 cut(s)	216, 592, 823
BsiSI	CCGG	4 cut(s)	32, 230, 408, 521
BslFI	GGGAC	2 cut(s)	592, 983
BslI	CCNNNNNNNGG	3 cut(s)	407, 414, 1006
BsmFI	GGGAC	2 cut(s)	592, 983
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	79, 400, 637
Bsp1286I	GDGCHC	3 cut(s)	216, 592, 823
Bsp143I	GATC	5 cut(s)	13, 103, 424, 944, 954
BspACI	CCGC	6 cut(s)	191, 353, 793, 852, 927, 1001
BspANI	GGCC	3 cut(s)	79, 400, 637
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	2 cut(s)	387, 854
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	295, 946
BspPI	GGATC	2 cut(s)	939, 952
BsrDI	GCAATG	1 cut(s)	882
BsrFI	RCCGGY	3 cut(s)	31, 407, 520
BsrI	ACTGG	3 cut(s)	652, 680, 989
BssAI	RCCGGY	3 cut(s)	31, 407, 520
BssECI	CCNNGG	2 cut(s)	624, 785
BssMI	GATC	5 cut(s)	13, 103, 424, 944, 954
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	2 cut(s)	382, 847
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstC8I	GCNNGC	5 cut(s)	77, 129, 350, 639, 768
BstDEI	CTNAG	2 cut(s)	114, 696
BstF5I	GGATG	3 cut(s)	427, 450, 661
BstFNI	CGCG	2 cut(s)	387, 854
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	5 cut(s)	16, 106, 427, 947, 957
BstMBI	GATC	5 cut(s)	13, 103, 424, 944, 954
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 790, 881, 890
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	784
BstSFI	CTRYAG	2 cut(s)	298, 582
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	2 cut(s)	387, 854
BstV1I	GCAGC	4 cut(s)	136, 575, 880, 893
BstV2I	GAAGAC	2 cut(s)	345, 698
BstX2I	RGATCY	1 cut(s)	944
BstXI	CCANNNNNNTGG	1 cut(s)	687
BstYI	RGATCY	1 cut(s)	944
BsuRI	GGCC	3 cut(s)	79, 400, 637
BtsCI	GGATG	3 cut(s)	427, 450, 661
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	3 cut(s)	64, 387, 645
Cac8I	GCNNGC	5 cut(s)	77, 129, 350, 639, 768
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	3 cut(s)	31, 407, 520
Cfr13I	GGNCC	1 cut(s)	34
CspAI	ACCGGT	1 cut(s)	407
CviAII	CATG	5 cut(s)	329, 512, 602, 673, 761
DdeI	CTNAG	2 cut(s)	114, 696
DpnI	GATC	5 cut(s)	15, 105, 426, 946, 956
DpnII	GATC	5 cut(s)	13, 103, 424, 944, 954
DraI	TTTAAA	2 cut(s)	142, 934
Eco147I	AGGCCT	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	784
EcoT22I	ATGCAT	1 cut(s)	661
FaeI	CATG	5 cut(s)	332, 515, 605, 676, 764
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	2 cut(s)	592, 983
FatI	CATG	5 cut(s)	328, 511, 601, 672, 760
FauI	CCCGC	4 cut(s)	198, 786, 859, 1008
FbaI	TGATCA	2 cut(s)	13, 424
Fnu4HI	GCNGC	5 cut(s)	125, 353, 564, 882, 894
FokI	GGATG	3 cut(s)	434, 457, 668
Fsp4HI	GCNGC	5 cut(s)	125, 353, 564, 882, 894
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	5 cut(s)	125, 353, 564, 882, 894
HaeIII	GGCC	3 cut(s)	79, 400, 637
HapII	CCGG	4 cut(s)	32, 230, 408, 521
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	5 cut(s)	332, 515, 605, 676, 764
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	265, 539, 860
HpaII	CCGG	4 cut(s)	32, 230, 408, 521
HphI	GGTGA	3 cut(s)	98, 320, 992
Hpy166II	GTNNAC	3 cut(s)	214, 670, 901
Hpy188I	TCNGA	5 cut(s)	13, 160, 180, 429, 625
Hpy188III	TCNNGA	2 cut(s)	207, 512
Hpy8I	GTNNAC	3 cut(s)	214, 670, 901
Hpy99I	CGWCG	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	382, 847
HpyCH4V	TGCA	7 cut(s)	214, 278, 318, 326, 456, 659, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 790, 881, 890
HpyF3I	CTNAG	2 cut(s)	114, 696
Hsp92II	CATG	5 cut(s)	332, 515, 605, 676, 764
HspAI	GCGC	1 cut(s)	385
Ksp22I	TGATCA	2 cut(s)	13, 424
Kzo9I	GATC	5 cut(s)	13, 103, 424, 944, 954
LmnI	GCTCC	6 cut(s)	136, 232, 242, 587, 715, 826
Lsp1109I	GCAGC	4 cut(s)	136, 575, 880, 893
LweI	GCATC	3 cut(s)	52, 171, 646
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	5 cut(s)	376, 500, 749, 774, 980
MalI	GATC	5 cut(s)	15, 105, 426, 946, 956
MboI	GATC	5 cut(s)	13, 103, 424, 944, 954
MboII	GAAGA	9 cut(s)	113, 173, 350, 442, 500, 527, 703, 917, 964
MfeI	CAATTG	2 cut(s)	361, 870
MflI	RGATCY	1 cut(s)	944
MhlI	GDGCHC	3 cut(s)	216, 592, 823
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	661
MroXI	GAANNNNTTC	2 cut(s)	342, 909
MseI	TTAA	7 cut(s)	69, 141, 234, 285, 404, 465, 933
MslI	CAYNNNNRTG	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	1003
MspI	CCGG	4 cut(s)	32, 230, 408, 521
MspR9I	CCNGG	1 cut(s)	786
MunI	CAATTG	2 cut(s)	361, 870
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	2 cut(s)	387, 854
MwoI	GCNNNNNNNGC	4 cut(s)	190, 790, 881, 890
NdeII	GATC	5 cut(s)	13, 103, 424, 944, 954
NlaIII	CATG	5 cut(s)	332, 515, 605, 676, 764
NlaIV	GGNNCC	2 cut(s)	295, 946
NmuCI	GTSAC	3 cut(s)	376, 749, 980
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	1 cut(s)	605
PagI	TCATGA	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	637
PciI	ACATGT	1 cut(s)	601
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	2 cut(s)	342, 909
PfeI	GAWTC	2 cut(s)	539, 860
PinAI	ACCGGT	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	126, 354, 565, 883, 895
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	2 cut(s)	295, 946
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	944
RseI	CAYNNNNRTG	1 cut(s)	650
SaqAI	TTAA	7 cut(s)	69, 141, 234, 285, 404, 465, 933
SatI	GCNGC	5 cut(s)	125, 353, 564, 882, 894
Sau3AI	GATC	5 cut(s)	13, 103, 424, 944, 954
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	3 cut(s)	216, 592, 823
SetI	ASST	7 cut(s)	133, 151, 375, 453, 500, 551, 1016
SfaNI	GCATC	3 cut(s)	52, 171, 646
SfcI	CTRYAG	2 cut(s)	298, 582
SinI	GGWCC	1 cut(s)	34
SmiI	ATTTAAAT	1 cut(s)	934
SmiMI	CAYNNNNRTG	1 cut(s)	650
SseBI	AGGCCT	1 cut(s)	637
SsiI	CCGC	6 cut(s)	191, 353, 793, 852, 927, 1001
SspMI	CTAG	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	637
StyD4I	CCNGG	1 cut(s)	784
SwaI	ATTTAAAT	1 cut(s)	934
TaaI	ACNGT	2 cut(s)	382, 847
TaqI	TCGA	2 cut(s)	151, 664
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	539, 860
Tru1I	TTAA	7 cut(s)	69, 141, 234, 285, 404, 465, 933
Tru9I	TTAA	7 cut(s)	69, 141, 234, 285, 404, 465, 933
TscAI	CASTG	3 cut(s)	64, 387, 652
TseFI	GTSAC	3 cut(s)	376, 749, 980
TseI	GCWGC	4 cut(s)	124, 563, 881, 893
Tsp45I	GTSAC	3 cut(s)	376, 749, 980
TspDTI	ATGAA	9 cut(s)	17, 107, 114, 212, 461, 500, 528, 689, 852
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	3 cut(s)	64, 387, 652
VneI	GTGCAC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	3 cut(s)	4, 154, 280
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	605
XmnI	GAANNNNTTC	2 cut(s)	342, 909
XspI	CTAG	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.