Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013976

Physical Location & Seq

Genomic Coordinates Reverse (-)

23044839 .. 23048292

Gene Structure 3454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGCGAGTTATAATCTTCGTTCACAAGTTCGTCTTATAGCAATAACAATAGTAATCATCATTACTCTCTCAACTCCGATCACAACCAACACATCACCACAACCATGGAATATCCTTTCACACAACGAATTCGCCGGAAAACTCACCTCCTCCTCCTCCTCCGTCGAATCAGCCGCCACAGATTTCGGCCACGTCACCAAAATCTTCCCTTCCGCCGTCTTAATCCCTTCCTCCGTTGAAGACATCACAGATCTCATAAAACTCTCTTTTGACTCTCAACTGTCTTTTCCTTTAGCCGCTCGTGGTCACGGACACAGCCACCGTGGCCAAGCCTCGGCTAAAGACGGAGTTGTGGTCAACATGCGGTCCATGGTAAACCGGGATCGAGGTATCAAGGTGTCTAGGACCTGTTTATATGTTGACGTGGACGCTGCGTGGCTATGGATTGAGGTGTTGAATAAAACTTTGGAGTTAGGGTTAACGCCGGTTTCTTGGACGGATTATTTGTATTTAACAGTCGGTGGGACGTTATCAAACGGCGGAATTAGTGGACAAACGTTTCGGTACGGTCCACAGATCACTAATGTTCTAGAGATGGATGTTATTACTGGAAAAGGAGAGATTGCAACTTGTTCCAAGGACATGAACTCGGATCTTTTCTTCGCGGTGTTAGGAGGTTTGGGTCAATTCGGCATTATAACAAGAGCCAGAATTAAACTTGAAGTAGCTCCGAAAAGGGCCAAGTGGTTAAGGTTTCTATACATAGATTTCTCCGAATTCACAAGAGATCAAGAACGAGTGATATCGAAAACGGACGGTGTAGATTTCTTAGAAGGTTCCATTATGGTGGACCATGGCCCACCGGATAACTGGAGATCCACGTATTATCCACCGTCCGATCACTTGAGGATCGCCTCAATGGTCAAACGACATCGTGTCATCTACTGCCTTGAAGTCGTCAAGTATTACGACGAAACTTCTCAATACACAGTCAACGAGGAAATGGAGGAGTTAAGCGATAGTTTAAACCATGTAAGAGGGTTTATGTACGAGAAAGATGTGACGTATATGGATTTCCTAAACCGAGTTCGAACCGGAGAGCTAAACCTGAAATCCAAAGGCCAATGGGATGTTCCACATCCATGGCTTAATCTCTTCGTACCAAAAACTCAAATCTCCAAATTTGATGATGGTGTTTTTAAGGGTATTATCCTAAGAAATAACATCACTAGCGGTCCTGTTCTTGTTTATCCTATGAATCGCAACAAGTGGAATGATCGGATGTCTGCCGCTATACCCGAGGAAGATGTATTTTATGCGGTAGGGTTTTTAAGATCCGCGGGTTTTGACAATTGGGAGGCTTTTGATCAAGAAAACATGGAAATACTGAAGTTTTGTGAGGATGCTAATATGGGGGTTATACAATATCTTCCTTATCATTCATCACAAGAAGGATGGGTTAGACATTTTGGTCCGAGGTGGAATATTTTCGTAGAGAGAAAATATAAATATGATCCCAAAATGATATTATCACCGGGACAAAATATATTTCAAAAAATAAACTCGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005788 GO:0006725 GO:0006807 GO:0008131 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009690 GO:0009823 GO:0009987 GO:0010817 GO:0012505 GO:0016491 GO:0016638 GO:0016641 GO:0016645 GO:0019139 GO:0031974 GO:0034754 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 map00908

Pfam Domains

Protein Families

Cytokin-bind FAD_binding_4

Protein Analysis

523

Amino Acids

59.42

Weight (kDa)

6.33

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	70 - 212	6e-19	FAD binding domain
Cytokin-bind	PF09265	244 - 423	9.4e-70	Cytokinin dehydrogenase 1, FAD and cytokinin binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56970 AT5G56970
fragaria_vesca	FvH4_1g07620
malus_domestica	MD15G1208300.v1.1
prunus_persica	Prupe.7G208400_v2.0.a1 Prupe.7G208400_v2.0.a1
pyrus_communis	pycom15g18450
rosa_chinensis	RchiOBHm_Chr2g0093491
rosa_laevigata	RLG00000016411
rosa_multiflora	Rmu_sc0004423.1_g000008
rosa_roxburghii	Rroxscaffold_2G00148040
rosa_rugosa	Rorug02G0036700
rosa_samantha	Rh2AG083200 Rh2BG083900 Rh2CG085900 Rh2DG082000
rosa_wichuraiana	Rw2G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	12, 698
AasI	GACNNNNNNGTC	1 cut(s)	1470
AccBSI	CCGCTC	1 cut(s)	299
AccII	CGCG	2 cut(s)	665, 1340
AclI	AACGTT	1 cut(s)	557
AclWI	GGATC	6 cut(s)	390, 660, 870, 917, 1329, 1508
AcoI	YGGCCR	2 cut(s)	187, 325
AcsI	RAATTY	3 cut(s)	128, 776, 1181
AcuI	CTGAAG	1 cut(s)	1409
AfaI	GTAC	3 cut(s)	566, 1049, 1161
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	5 cut(s)	239, 457, 722, 953, 1553
AhdI	GACNNNNNGTC	1 cut(s)	935
AjiI	CACGTC	2 cut(s)	193, 424
AjuI	GAANNNNNNNTTGG	4 cut(s)	449, 481, 1116, 1148
AluBI	AGCT	2 cut(s)	728, 1102
AluI	AGCT	2 cut(s)	728, 1102
AlwI	GGATC	6 cut(s)	390, 660, 870, 917, 1329, 1508
Ama87I	CYCGRG	2 cut(s)	1298, 1564
AoxI	GGCC	5 cut(s)	187, 325, 738, 856, 1120
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	3 cut(s)	128, 776, 1181
ArsI	GACNNNNNNTTYG	4 cut(s)	487, 519, 543, 575
Asp700I	GAANNNNTTC	1 cut(s)	1487
AspS9I	GGNCC	8 cut(s)	366, 405, 569, 738, 850, 857, 1235, 1472
AsuC2I	CCSGG	2 cut(s)	380, 1536
AsuHPI	GGTGA	4 cut(s)	87, 136, 187, 1524
AsuII	TTCGAA	1 cut(s)	1090
AvaI	CYCGRG	2 cut(s)	1298, 1564
AvaII	GGWCC	6 cut(s)	366, 405, 569, 850, 1235, 1472
BalI	TGGCCA	1 cut(s)	327
BauI	CACGAG	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	3 cut(s)	589, 1184, 1449
BceAI	ACGGC	2 cut(s)	200, 553
BclI	TGATCA	1 cut(s)	1366
BcnI	CCSGG	2 cut(s)	380, 1536
BfaI	CTAG	3 cut(s)	402, 590, 1230
BglI	GCCNNNNNGGC	1 cut(s)	324
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	4 cut(s)	174, 297, 432, 1290
BlsI	GCNGC	4 cut(s)	175, 298, 433, 1291
Bme1390I	CCNGG	2 cut(s)	380, 1536
Bme18I	GGWCC	6 cut(s)	366, 405, 569, 850, 1235, 1472
BmeRI	GACNNNNNGTC	1 cut(s)	935
BmeT110I	CYCGRG	2 cut(s)	1298, 1564
BmgBI	CACGTC	2 cut(s)	193, 424
BmgT120I	GGNCC	8 cut(s)	366, 405, 569, 738, 850, 857, 1235, 1472
BmiI	GGNNCC	1 cut(s)	838
BmrFI	CCNGG	2 cut(s)	380, 1536
BmsI	GCATC	1 cut(s)	1393
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	892
Bpu14I	TTCGAA	1 cut(s)	1090
BpuEI	CTTGAG	1 cut(s)	925
BpuMI	CCSGG	2 cut(s)	380, 1536
BsaAI	YACGTR	1 cut(s)	882
BsaWI	WCCGGW	2 cut(s)	862, 1094
BsaXI	ACNNNNNCTCC	4 cut(s)	339, 369, 461, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	613, 875
BseGI	GGATG	6 cut(s)	604, 1135, 1138, 1287, 1408, 1460
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseNI	ACTGG	2 cut(s)	613, 875
BseRI	GAGGAG	5 cut(s)	139, 142, 145, 148, 1022
BseXI	GCAGC	1 cut(s)	418
Bsh1236I	CGCG	2 cut(s)	665, 1340
BshFI	GGCC	5 cut(s)	189, 327, 740, 858, 1122
BsiHKCI	CYCGRG	2 cut(s)	1298, 1564
BsiSI	CCGG	6 cut(s)	135, 379, 485, 863, 1095, 1535
BslFI	GGGAC	2 cut(s)	538, 1551
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	538, 1551
BsnI	GGCC	5 cut(s)	189, 327, 740, 858, 1122
BsoBI	CYCGRG	2 cut(s)	1298, 1564
Bsp119I	TTCGAA	1 cut(s)	1090
Bsp19I	CCATGG	4 cut(s)	104, 369, 853, 1142
BspANI	GGCC	5 cut(s)	189, 327, 740, 858, 1122
BspFNI	CGCG	2 cut(s)	665, 1340
BspLI	GGNNCC	1 cut(s)	838
BspPI	GGATC	6 cut(s)	390, 660, 870, 917, 1329, 1508
BspT104I	TTCGAA	1 cut(s)	1090
BsrBI	CCGCTC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	2 cut(s)	613, 875
BssAI	RCCGGY	1 cut(s)	484
BssSI	CACGAG	1 cut(s)	300
BssT1I	CCWWGG	5 cut(s)	104, 369, 636, 853, 1142
Bst2BI	CACGAG	1 cut(s)	300
Bst4CI	ACNGT	7 cut(s)	282, 323, 517, 569, 818, 894, 991
Bst6I	CTCTTC	1 cut(s)	1160
BstBAI	YACGTR	1 cut(s)	882
BstBI	TTCGAA	1 cut(s)	1090
BstDEI	CTNAG	2 cut(s)	829, 1214
BstDSI	CCRYGG	6 cut(s)	104, 322, 369, 853, 1142, 1338
BstF5I	GGATG	6 cut(s)	604, 1135, 1138, 1287, 1408, 1460
BstFNI	CGCG	2 cut(s)	665, 1340
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	378, 1534
BstUI	CGCG	2 cut(s)	665, 1340
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	4 cut(s)	250, 652, 875, 1334
BstXI	CCANNNNNNTGG	3 cut(s)	105, 847, 1143
BstYI	RGATCY	4 cut(s)	250, 652, 875, 1334
BsuRI	GGCC	5 cut(s)	189, 327, 740, 858, 1122
BtgI	CCRYGG	6 cut(s)	104, 322, 369, 853, 1142, 1338
BtrI	CACGTC	2 cut(s)	193, 424
BtsCI	GGATG	6 cut(s)	604, 1135, 1138, 1287, 1408, 1460
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	8 cut(s)	366, 405, 569, 738, 850, 857, 1235, 1472
Cfr42I	CCGCGG	1 cut(s)	1341
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	3 cut(s)	565, 1048, 1160
CviAII	CATG	8 cut(s)	105, 361, 370, 643, 854, 1031, 1143, 1378
CviQI	GTAC	3 cut(s)	565, 1048, 1160
DdeI	CTNAG	2 cut(s)	829, 1214
DraI	TTTAAA	1 cut(s)	1026
DrdI	GACNNNNNNGTC	1 cut(s)	1470
DriI	GACNNNNNGTC	1 cut(s)	935
DseDI	GACNNNNNNGTC	1 cut(s)	1470
EaeI	YGGCCR	2 cut(s)	187, 325
Eam1104I	CTCTTC	1 cut(s)	1160
Eam1105I	GACNNNNNGTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	1160
EciI	GGCGGA	2 cut(s)	202, 555
Eco130I	CCWWGG	5 cut(s)	104, 369, 636, 853, 1142
Eco32I	GATATC	1 cut(s)	804
Eco47I	GGWCC	6 cut(s)	366, 405, 569, 850, 1235, 1472
Eco57I	CTGAAG	1 cut(s)	1409
Eco88I	CYCGRG	2 cut(s)	1298, 1564
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRI	GAATTC	2 cut(s)	128, 776
EcoRV	GATATC	1 cut(s)	804
EcoT14I	CCWWGG	5 cut(s)	104, 369, 636, 853, 1142
ErhI	CCWWGG	5 cut(s)	104, 369, 636, 853, 1142
FaeI	CATG	8 cut(s)	108, 364, 373, 646, 857, 1034, 1146, 1381
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	2 cut(s)	538, 1551
FatI	CATG	8 cut(s)	104, 360, 369, 642, 853, 1030, 1142, 1377
FauI	CCCGC	1 cut(s)	1333
FbaI	TGATCA	1 cut(s)	1366
Fnu4HI	GCNGC	4 cut(s)	174, 297, 432, 1290
FokI	GGATG	6 cut(s)	611, 1125, 1142, 1294, 1415, 1467
Fsp4HI	GCNGC	4 cut(s)	174, 297, 432, 1290
FspBI	CTAG	3 cut(s)	402, 590, 1230
GluI	GCNGC	4 cut(s)	174, 297, 432, 1290
GsuI	CTGGAG	1 cut(s)	892
HaeIII	GGCC	5 cut(s)	189, 327, 740, 858, 1122
HapII	CCGG	6 cut(s)	135, 379, 485, 863, 1095, 1535
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	8 cut(s)	108, 364, 373, 646, 857, 1034, 1146, 1381
HincII	GTYRAC	4 cut(s)	358, 421, 480, 994
HindII	GTYRAC	4 cut(s)	358, 421, 480, 994
HinfI	GANTC	3 cut(s)	167, 272, 1258
HpaI	GTTAAC	1 cut(s)	480
HpaII	CCGG	6 cut(s)	135, 379, 485, 863, 1095, 1535
HphI	GGTGA	4 cut(s)	87, 136, 187, 1524
Hpy188I	TCNGA	7 cut(s)	78, 652, 732, 775, 898, 1281, 1476
Hpy188III	TCNNGA	3 cut(s)	590, 791, 1370
Hpy99I	CGWCG	2 cut(s)	167, 974
HpyAV	CCTTC	4 cut(s)	219, 237, 827, 1445
HpyCH4III	ACNGT	7 cut(s)	282, 323, 517, 569, 818, 894, 991
HpyCH4IV	ACGT	6 cut(s)	192, 423, 527, 557, 881, 1064
HpyCH4V	TGCA	1 cut(s)	626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	2 cut(s)	829, 1214
HpySE526I	ACGT	6 cut(s)	192, 423, 527, 557, 881, 1064
Hsp92II	CATG	8 cut(s)	108, 364, 373, 646, 857, 1034, 1146, 1381
Ksp22I	TGATCA	1 cut(s)	1366
KspAI	GTTAAC	1 cut(s)	480
KspI	CCGCGG	1 cut(s)	1341
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	1 cut(s)	1393
MaeI	CTAG	3 cut(s)	402, 590, 1230
MaeII	ACGT	6 cut(s)	192, 423, 527, 557, 881, 1064
MaeIII	GTNAC	3 cut(s)	193, 305, 1060
MbiI	CCGCTC	1 cut(s)	299
MboII	GAAGA	7 cut(s)	8, 196, 251, 652, 1147, 1316, 1421
MfeI	CAATTG	1 cut(s)	1351
MflI	RGATCY	4 cut(s)	250, 652, 875, 1334
MlsI	TGGCCA	1 cut(s)	327
MluCI	AATT	7 cut(s)	128, 543, 686, 711, 776, 1181, 1351
MluNI	TGGCCA	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	266
Mox20I	TGGCCA	1 cut(s)	327
MroXI	GAANNNNTTC	1 cut(s)	1487
MscI	TGGCCA	1 cut(s)	327
MslI	CAYNNNNRTG	3 cut(s)	103, 845, 1141
Msp20I	TGGCCA	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	1340
MspI	CCGG	6 cut(s)	135, 379, 485, 863, 1095, 1535
MspR9I	CCNGG	2 cut(s)	380, 1536
MssI	GTTTAAAC	1 cut(s)	1026
MunI	CAATTG	1 cut(s)	1351
MvnI	CGCG	2 cut(s)	665, 1340
MwoI	GCNNNNNNNGC	1 cut(s)	324
NciI	CCSGG	2 cut(s)	380, 1536
NcoI	CCATGG	4 cut(s)	104, 369, 853, 1142
NlaIII	CATG	8 cut(s)	108, 364, 373, 646, 857, 1034, 1146, 1381
NlaIV	GGNNCC	1 cut(s)	838
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	3 cut(s)	193, 305, 1060
NspI	RCATGY	1 cut(s)	364
NspV	TTCGAA	1 cut(s)	1090
PaeR7I	CTCGAG	1 cut(s)	1564
PdmI	GAANNNNTTC	1 cut(s)	1487
PfeI	GAWTC	2 cut(s)	167, 1258
PkrI	GCNGC	4 cut(s)	175, 298, 433, 1291
PleI	GAGTC	1 cut(s)	266
PmeI	GTTTAAAC	1 cut(s)	1026
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	882
PpuMI	RGGWCCY	1 cut(s)	405
PsiI	TTATAA	2 cut(s)	12, 698
Psp1406I	AACGTT	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	8 cut(s)	366, 405, 569, 738, 850, 857, 1235, 1472
PspPPI	RGGWCCY	1 cut(s)	405
PspXI	VCTCGAGB	1 cut(s)	1564
PsuI	RGATCY	4 cut(s)	250, 652, 875, 1334
RsaI	GTAC	3 cut(s)	566, 1049, 1161
RsaNI	GTAC	3 cut(s)	565, 1048, 1160
RseI	CAYNNNNRTG	3 cut(s)	103, 845, 1141
SacII	CCGCGG	1 cut(s)	1341
SatI	GCNGC	4 cut(s)	174, 297, 432, 1290
Sau96I	GGNCC	8 cut(s)	366, 405, 569, 738, 850, 857, 1235, 1472
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	380, 1536
SfaNI	GCATC	1 cut(s)	1393
Sfr274I	CTCGAG	1 cut(s)	1564
Sfr303I	CCGCGG	1 cut(s)	1341
SfuI	TTCGAA	1 cut(s)	1090
SgrBI	CCGCGG	1 cut(s)	1341
SinI	GGWCC	6 cut(s)	366, 405, 569, 850, 1235, 1472
SlaI	CTCGAG	1 cut(s)	1564
SmiMI	CAYNNNNRTG	3 cut(s)	103, 845, 1141
SmlI	CTYRAG	2 cut(s)	904, 1564
SmoI	CTYRAG	2 cut(s)	904, 1564
Sse9I	AATT	7 cut(s)	128, 543, 686, 711, 776, 1181, 1351
SspI	AATATT	1 cut(s)	1486
SspMI	CTAG	3 cut(s)	402, 590, 1230
StyD4I	CCNGG	2 cut(s)	378, 1534
StyI	CCWWGG	5 cut(s)	104, 369, 636, 853, 1142
TaaI	ACNGT	7 cut(s)	282, 323, 517, 569, 818, 894, 991
TaiI	ACGT	6 cut(s)	195, 426, 530, 560, 884, 1067
TaqI	TCGA	5 cut(s)	165, 385, 806, 1090, 1565
TasI	AATT	7 cut(s)	128, 543, 686, 711, 776, 1181, 1351
TauI	GCSGC	3 cut(s)	176, 299, 1292
TfiI	GAWTC	2 cut(s)	167, 1258
TseFI	GTSAC	3 cut(s)	193, 305, 1060
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	3 cut(s)	193, 305, 1060
TspDTI	ATGAA	3 cut(s)	659, 1271, 1431
TspGWI	ACGGA	6 cut(s)	151, 223, 324, 360, 512, 827
VpaK11BI	GGWCC	6 cut(s)	366, 405, 569, 850, 1235, 1472
XapI	RAATTY	3 cut(s)	128, 776, 1181
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	867
XhoI	CTCGAG	1 cut(s)	1564
XmnI	GAANNNNTTC	1 cut(s)	1487
XspI	CTAG	3 cut(s)	402, 590, 1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.