Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016181

Physical Location & Seq

Genomic Coordinates Forward (+)

6427574 .. 6431117

Gene Structure 3544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG081800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGGGAAAACCCCAACCGGTTCGCGTCCTGTACTGCGCGGTCTGCAGTTTACCGGCCGAGTACTGTGAATTCGGACCCGATTTCGAGAAATGCAAGCCCTGGTTGGTCCAAAACGCCCCGGAGCTTTACCCCGATCTCGTCAGAGATGCTACTGCGAAGGAAGCTGATAGAGTAGCCGATCAGTTGAACGCCACCGGTATCTCTTTCGGAAGTGGCGACGGAGCTACCGCTTCTTCAGCGCCTAAAGAAGAGGTCAAGCGTCTGCCGGGTGGGAAGGTCAAGAAAAAGGAGAAGCTGGAGGTTATTATTGAAAAGGTTACACGCAATAAGCGAAAATGTATCACAACTGTCAAAGGACTGGAGCTTTTTGGTGTCAAACTTAGTGATGCTTCAAAGAAGTTAGGGAAGAAATTTGCTACAGGAGCTTCTGTTGTCAAGGGGCCAACCGAGAAGGACCAAATTGATGTTCAAGGGGATATATTTTATGACATTGTGGAGTTCATTACCGACACCTGGCCTGATGTAAGCTACTACACATACTGTCCTTTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0002190 GO:0002192 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0065003 GO:0070992 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0110017 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SUI1

Protein Analysis

185

Amino Acids

20.36

Weight (kDa)

8.12

Isoelectric Point (pI)

24.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DENR_N	PF21023	10 - 45	7.6e-19	DENR, N-terminal
SUI1	PF01253	101 - 171	3.5e-20	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11900
fragaria_vesca	FvH4_1g07600
malus_domestica	MD02G1080600.v1.1 MD15G1208100.v1.1
prunus_persica	Prupe.7G208600_v2.0.a1
pyrus_communis	pycom02g06390 pycom15g18430
rosa_chinensis	RchiOBHm_Chr2g0093471
rosa_laevigata	RLG00000016409
rosa_multiflora	Rmu_sc0004086.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148060
rosa_rugosa	Rorug02G0036700
rosa_samantha	Rh2BG083700 Rh2DG081800
rosa_wichuraiana	Rw2G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	27, 41
AciI	CCGC	3 cut(s)	5, 41, 231
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	71, 413
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	2 cut(s)	35, 65
AfiI	CCNNNNNNNGG	1 cut(s)	516
AgeI	ACCGGT	2 cut(s)	19, 197
AgsI	TTSAA	4 cut(s)	190, 314, 396, 473
AjnI	CCWGG	2 cut(s)	101, 515
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AluBI	AGCT	7 cut(s)	127, 167, 227, 298, 367, 428, 531
AluI	AGCT	7 cut(s)	127, 167, 227, 298, 367, 428, 531
AoxI	GGCC	3 cut(s)	57, 443, 518
ApoI	RAATTY	2 cut(s)	71, 413
AsiGI	ACCGGT	2 cut(s)	19, 197
AspLEI	GCGC	2 cut(s)	41, 244
AspS9I	GGNCC	4 cut(s)	77, 109, 443, 457
AsuC2I	CCSGG	2 cut(s)	122, 270
AvaII	GGWCC	3 cut(s)	77, 109, 457
BciT130I	CCWGG	2 cut(s)	103, 517
BcnI	CCSGG	2 cut(s)	122, 270
BfmI	CTRYAG	2 cut(s)	46, 420
BfoI	RGCGCY	1 cut(s)	245
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	4 cut(s)	103, 122, 270, 517
Bme18I	GGWCC	3 cut(s)	77, 109, 457
BmgT120I	GGNCC	4 cut(s)	77, 109, 443, 457
BmiI	GGNNCC	2 cut(s)	79, 444
BmrFI	CCNGG	4 cut(s)	103, 122, 270, 517
BmsI	GCATC	2 cut(s)	139, 379
BpmI	CTGGAG	2 cut(s)	320, 383
BpuMI	CCSGG	2 cut(s)	122, 270
BsaJI	CCNNGG	2 cut(s)	101, 120
BsaWI	WCCGGW	2 cut(s)	19, 197
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse118I	RCCGGY	3 cut(s)	19, 55, 197
Bse1I	ACTGG	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	103, 517
BseDI	CCNNGG	2 cut(s)	101, 120
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	366
BseX3I	CGGCCG	1 cut(s)	57
Bsh1236I	CGCG	2 cut(s)	27, 41
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	59, 445, 520
BshTI	ACCGGT	2 cut(s)	19, 197
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	5 cut(s)	20, 56, 122, 198, 269
BslI	CCNNNNNNNGG	1 cut(s)	516
BsnI	GGCC	3 cut(s)	59, 445, 520
Bsp143I	GATC	2 cut(s)	136, 181
BspACI	CCGC	3 cut(s)	5, 41, 231
BspANI	GGCC	3 cut(s)	59, 445, 520
BspFNI	CGCG	2 cut(s)	27, 41
BspLI	GGNNCC	2 cut(s)	79, 444
BspMAI	CTGCAG	1 cut(s)	50
BsrFI	RCCGGY	3 cut(s)	19, 55, 197
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	3 cut(s)	19, 55, 197
BssECI	CCNNGG	2 cut(s)	101, 120
BssMI	GATC	2 cut(s)	136, 181
Bst2UI	CCWGG	2 cut(s)	103, 517
Bst4CI	ACNGT	3 cut(s)	68, 352, 545
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	383
BstFNI	CGCG	2 cut(s)	27, 41
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	41, 244
BstKTI	GATC	2 cut(s)	139, 184
BstMBI	GATC	2 cut(s)	136, 181
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 164, 239, 425
BstNI	CCWGG	2 cut(s)	103, 517
BstSCI	CCNGG	4 cut(s)	101, 120, 268, 515
BstSFI	CTRYAG	2 cut(s)	46, 420
BstUI	CGCG	2 cut(s)	27, 41
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	59, 445, 520
Cac8I	GCNNGC	1 cut(s)	98
CfoI	GCGC	2 cut(s)	41, 244
Cfr10I	RCCGGY	3 cut(s)	19, 55, 197
Cfr13I	GGNCC	4 cut(s)	77, 109, 443, 457
CseI	GACGC	2 cut(s)	16, 251
Csp6I	GTAC	2 cut(s)	34, 64
CspAI	ACCGGT	2 cut(s)	19, 197
CviQI	GTAC	2 cut(s)	34, 64
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	2 cut(s)	138, 183
DpnII	GATC	2 cut(s)	136, 181
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EclXI	CGGCCG	1 cut(s)	57
Eco47I	GGWCC	3 cut(s)	77, 109, 457
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	101, 515
FaiI	YATR	3 cut(s)	482, 489, 541
GlaI	GCGC	2 cut(s)	40, 243
GsuI	CTGGAG	2 cut(s)	320, 383
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	59, 445, 520
HapII	CCGG	5 cut(s)	20, 56, 122, 198, 269
HgaI	GACGC	2 cut(s)	16, 251
HhaI	GCGC	2 cut(s)	41, 244
Hin6I	GCGC	2 cut(s)	39, 242
HinP1I	GCGC	2 cut(s)	39, 242
HpaII	CCGG	5 cut(s)	20, 56, 122, 198, 269
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	3 cut(s)	77, 146, 212
Hpy188III	TCNNGA	2 cut(s)	88, 283
Hpy8I	GTNNAC	1 cut(s)	53
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	154, 271, 448
HpyCH4III	ACNGT	3 cut(s)	68, 352, 545
HpyCH4V	TGCA	2 cut(s)	48, 96
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 164, 239, 425
HpyF3I	CTNAG	1 cut(s)	383
HspAI	GCGC	2 cut(s)	39, 242
Kzo9I	GATC	2 cut(s)	136, 181
LmnI	GCTCC	4 cut(s)	124, 224, 364, 425
LweI	GCATC	2 cut(s)	139, 379
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	2 cut(s)	138, 183
MboI	GATC	2 cut(s)	136, 181
MboII	GAAGA	3 cut(s)	228, 263, 421
MluCI	AATT	3 cut(s)	71, 413, 462
MnlI	CCTC	2 cut(s)	247, 295
MseI	TTAA	1 cut(s)	556
MspI	CCGG	5 cut(s)	20, 56, 122, 198, 269
MspR9I	CCNGG	4 cut(s)	103, 122, 270, 517
MvaI	CCWGG	2 cut(s)	103, 517
MvnI	CGCG	2 cut(s)	27, 41
MwoI	GCNNNNNNNGC	4 cut(s)	45, 164, 239, 425
NciI	CCSGG	2 cut(s)	122, 270
NdeII	GATC	2 cut(s)	136, 181
NlaIV	GGNNCC	2 cut(s)	79, 444
NmeAIII	GCCGAG	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 331
PinAI	ACCGGT	2 cut(s)	19, 197
Psp6I	CCWGG	2 cut(s)	101, 515
PspGI	CCWGG	2 cut(s)	101, 515
PspN4I	GGNNCC	2 cut(s)	79, 444
PspPI	GGNCC	4 cut(s)	77, 109, 443, 457
PstI	CTGCAG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	35, 65
RsaNI	GTAC	2 cut(s)	34, 64
SaqAI	TTAA	1 cut(s)	556
Sau3AI	GATC	2 cut(s)	136, 181
Sau96I	GGNCC	4 cut(s)	77, 109, 443, 457
ScaI	AGTACT	1 cut(s)	65
ScrFI	CCNGG	4 cut(s)	103, 122, 270, 517
SfaNI	GCATC	2 cut(s)	139, 379
SfcI	CTRYAG	2 cut(s)	46, 420
SinI	GGWCC	3 cut(s)	77, 109, 457
Sse9I	AATT	3 cut(s)	71, 413, 462
SsiI	CCGC	3 cut(s)	5, 41, 231
StyD4I	CCNGG	4 cut(s)	101, 120, 268, 515
TaaI	ACNGT	3 cut(s)	68, 352, 545
TaqI	TCGA	1 cut(s)	87
TasI	AATT	3 cut(s)	71, 413, 462
TatI	WGTACW	2 cut(s)	33, 63
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TspDTI	ATGAA	1 cut(s)	493
TspGWI	ACGGA	1 cut(s)	237
VpaK11BI	GGWCC	3 cut(s)	77, 109, 457
XapI	RAATTY	2 cut(s)	71, 413
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.