Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004086.1

Orthogroup ID

OG0016181

Physical Location & Seq

Genomic Coordinates Reverse (-)

14428 .. 17670

Gene Structure 3243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004086.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atggcgggaaaaccccaaccggttcgggtcctgtactgcgcggtctgcagtttaccggccgagtactgtgaattcggacccgatttcgagaaatgcaagccctggttggtccaaaacgccccggagctttaccccgatctcgtcagagatgctactgcgaaggaagctgatagagtagccgatcagttgaacgccaccggtatctctttcggaagtggcgacggagctaccgcttcttcagcgcctaaagaagaggtcaagcgtctgccgggtgggaaggtcaagaaaaaggagaagctggaggttattattgaaaaggttacacgcaataagcgaaaatgtatcacaactgtcaaaggactggagctttttggtgtcaaacttagtgatgcttcaaagaagttagggaagaaatttgctacaggagcttctgttgtcaaggggccaaccgagaaggaccaaattgatgttcaaggggatatattttatgacattgtggagttcattaccgacacctggcctgatgtcccagagtctgcaattttctttattgaagatggcagaaagggttatgctgggttccctggacacggagggtctgatctggtggcgagtactgacggcgagtactggcgtcgcggtttggaggtcgaaggtgatggaccaatggcactgacggcgagtaccgatggtgacgcatctggcggtctttggttggaaaatcactggtgggctcactgggctagggctttgagttctcctactatttgggtctgcgtaggggttcaagtgggctggattactcttttgctatgggattggatggattgggtctttatgacccataatactatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0002190 GO:0002192 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0065003 GO:0070992 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0110017 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SUI1

Protein Analysis

285

Amino Acids

31.33

Weight (kDa)

5.27

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11900
fragaria_vesca	FvH4_1g07600
malus_domestica	MD02G1080600.v1.1 MD15G1208100.v1.1
prunus_persica	Prupe.7G208600_v2.0.a1
pyrus_communis	pycom02g06390 pycom15g18430
rosa_chinensis	RchiOBHm_Chr2g0093471
rosa_laevigata	RLG00000016409
rosa_multiflora	Rmu_sc0004086.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148060
rosa_rugosa	Rorug02G0036700
rosa_samantha	Rh2BG083700 Rh2DG081800
rosa_wichuraiana	Rw2G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	41, 639
AciI	CCGC	5 cut(s)	5, 41, 231, 639, 705
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	71, 413
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	634
AfaI	GTAC	5 cut(s)	35, 65, 616, 629, 685
AfiI	CCNNNNNNNGG	2 cut(s)	516, 590
AgeI	ACCGGT	2 cut(s)	19, 197
AgsI	TTSAA	6 cut(s)	190, 314, 396, 473, 554, 788
AjnI	CCWGG	3 cut(s)	101, 515, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AluBI	AGCT	6 cut(s)	127, 167, 227, 298, 367, 428
AluI	AGCT	6 cut(s)	127, 167, 227, 298, 367, 428
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	3 cut(s)	57, 443, 518
ApoI	RAATTY	2 cut(s)	71, 413
AsiGI	ACCGGT	2 cut(s)	19, 197
AspLEI	GCGC	2 cut(s)	41, 244
AspS9I	GGNCC	6 cut(s)	28, 77, 109, 443, 457, 662
AsuC2I	CCSGG	2 cut(s)	122, 270
AsuHPI	GGTGA	2 cut(s)	668, 704
AvaII	GGWCC	5 cut(s)	28, 77, 109, 457, 662
BanII	GRGCYC	1 cut(s)	736
BccI	CCATC	4 cut(s)	551, 653, 683, 817
BceAI	ACGGC	2 cut(s)	637, 693
BciT130I	CCWGG	3 cut(s)	103, 517, 585
BcnI	CCSGG	2 cut(s)	122, 270
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	2 cut(s)	46, 420
BfoI	RGCGCY	1 cut(s)	245
BmcAI	AGTACT	3 cut(s)	65, 616, 629
Bme1390I	CCNGG	5 cut(s)	103, 122, 270, 517, 585
Bme18I	GGWCC	5 cut(s)	28, 77, 109, 457, 662
BmgT120I	GGNCC	6 cut(s)	28, 77, 109, 443, 457, 662
BmiI	GGNNCC	4 cut(s)	29, 79, 444, 581
BmrFI	CCNGG	5 cut(s)	103, 122, 270, 517, 585
BmrI	ACTGGG	1 cut(s)	748
BmsI	GCATC	3 cut(s)	139, 379, 707
BmuI	ACTGGG	1 cut(s)	748
BpmI	CTGGAG	2 cut(s)	320, 383
BpuMI	CCSGG	2 cut(s)	122, 270
BsaHI	GRCGYC	1 cut(s)	634
BsaJI	CCNNGG	3 cut(s)	101, 120, 583
BsaWI	WCCGGW	2 cut(s)	19, 197
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	516, 590
Bse118I	RCCGGY	3 cut(s)	19, 55, 197
Bse1I	ACTGG	4 cut(s)	366, 635, 731, 743
BseBI	CCWGG	3 cut(s)	103, 517, 585
BseDI	CCNNGG	3 cut(s)	101, 120, 583
BseGI	GGATG	1 cut(s)	828
BseLI	CCNNNNNNNGG	2 cut(s)	516, 590
BseNI	ACTGG	4 cut(s)	366, 635, 731, 743
BseX3I	CGGCCG	1 cut(s)	57
BseYI	CCCAGC	1 cut(s)	575
Bsh1236I	CGCG	2 cut(s)	41, 639
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	59, 445, 520
BshTI	ACCGGT	2 cut(s)	19, 197
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	5 cut(s)	20, 56, 122, 198, 269
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	516, 590
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	3 cut(s)	59, 445, 520
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp143I	GATC	3 cut(s)	136, 181, 601
BspACI	CCGC	5 cut(s)	5, 41, 231, 639, 705
BspANI	GGCC	3 cut(s)	59, 445, 520
BspFNI	CGCG	2 cut(s)	41, 639
BspLI	GGNNCC	4 cut(s)	29, 79, 444, 581
BspMAI	CTGCAG	1 cut(s)	50
BsrFI	RCCGGY	3 cut(s)	19, 55, 197
BsrI	ACTGG	4 cut(s)	366, 635, 731, 743
BssAI	RCCGGY	3 cut(s)	19, 55, 197
BssECI	CCNNGG	3 cut(s)	101, 120, 583
BssMI	GATC	3 cut(s)	136, 181, 601
BssNI	GRCGYC	1 cut(s)	634
Bst2UI	CCWGG	3 cut(s)	103, 517, 585
Bst4CI	ACNGT	2 cut(s)	68, 352
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	828
BstFNI	CGCG	2 cut(s)	41, 639
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	41, 244
BstKTI	GATC	3 cut(s)	139, 184, 604
BstMBI	GATC	3 cut(s)	136, 181, 601
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 164, 239, 425, 677, 740
BstNI	CCWGG	3 cut(s)	103, 517, 585
BstSCI	CCNGG	5 cut(s)	101, 120, 268, 515, 583
BstSFI	CTRYAG	2 cut(s)	46, 420
BstUI	CGCG	2 cut(s)	41, 639
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	59, 445, 520
BtsCI	GGATG	1 cut(s)	828
BtsIMutI	CAGTG	3 cut(s)	671, 724, 736
Cac8I	GCNNGC	1 cut(s)	98
CaiI	CAGNNNCTG	1 cut(s)	536
CfoI	GCGC	2 cut(s)	41, 244
Cfr10I	RCCGGY	3 cut(s)	19, 55, 197
Cfr13I	GGNCC	6 cut(s)	28, 77, 109, 443, 457, 662
CseI	GACGC	3 cut(s)	251, 623, 704
Csp6I	GTAC	5 cut(s)	34, 64, 615, 628, 684
CspAI	ACCGGT	2 cut(s)	19, 197
CviQI	GTAC	5 cut(s)	34, 64, 615, 628, 684
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	3 cut(s)	138, 183, 603
DpnII	GATC	3 cut(s)	136, 181, 601
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EclXI	CGGCCG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	736
Eco47I	GGWCC	5 cut(s)	28, 77, 109, 457, 662
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	101, 515, 583
EcoT38I	GRGCYC	1 cut(s)	736
FaiI	YATR	6 cut(s)	482, 489, 573, 814, 839, 846
FaqI	GGGAC	1 cut(s)	512
FokI	GGATG	1 cut(s)	835
FriOI	GRGCYC	1 cut(s)	736
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	2 cut(s)	40, 243
GsaI	CCCAGC	1 cut(s)	579
GsuI	CTGGAG	2 cut(s)	320, 383
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	59, 445, 520
HapII	CCGG	5 cut(s)	20, 56, 122, 198, 269
HgaI	GACGC	3 cut(s)	251, 623, 704
HhaI	GCGC	2 cut(s)	41, 244
Hin1I	GRCGYC	1 cut(s)	634
Hin6I	GCGC	2 cut(s)	39, 242
HinP1I	GCGC	2 cut(s)	39, 242
HinfI	GANTC	1 cut(s)	533
HpaII	CCGG	5 cut(s)	20, 56, 122, 198, 269
HphI	GGTGA	2 cut(s)	668, 704
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	4 cut(s)	77, 146, 212, 601
Hpy188III	TCNNGA	2 cut(s)	88, 283
Hpy8I	GTNNAC	1 cut(s)	53
Hpy99I	CGWCG	2 cut(s)	224, 639
HpyAV	CCTTC	4 cut(s)	154, 271, 448, 647
HpyCH4III	ACNGT	2 cut(s)	68, 352
HpyCH4V	TGCA	3 cut(s)	48, 96, 539
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 164, 239, 425, 677, 740
HpyF3I	CTNAG	1 cut(s)	383
Hsp92I	GRCGYC	1 cut(s)	634
HspAI	GCGC	2 cut(s)	39, 242
Kzo9I	GATC	3 cut(s)	136, 181, 601
LmnI	GCTCC	4 cut(s)	124, 224, 364, 425
LweI	GCATC	3 cut(s)	139, 379, 707
MaeI	CTAG	1 cut(s)	744
MaeIII	GTNAC	2 cut(s)	319, 692
MalI	GATC	3 cut(s)	138, 183, 603
MboI	GATC	3 cut(s)	136, 181, 601
MboII	GAAGA	4 cut(s)	228, 263, 421, 566
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	4 cut(s)	71, 413, 462, 540
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	1 cut(s)	696
MnlI	CCTC	4 cut(s)	247, 295, 587, 640
MseI	TTAA	1 cut(s)	856
MspI	CCGG	5 cut(s)	20, 56, 122, 198, 269
MspR9I	CCNGG	5 cut(s)	103, 122, 270, 517, 585
MvaI	CCWGG	3 cut(s)	103, 517, 585
MvnI	CGCG	2 cut(s)	41, 639
MwoI	GCNNNNNNNGC	6 cut(s)	45, 164, 239, 425, 677, 740
NciI	CCSGG	2 cut(s)	122, 270
NdeII	GATC	3 cut(s)	136, 181, 601
NlaIV	GGNNCC	4 cut(s)	29, 79, 444, 581
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	692
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 331
PinAI	ACCGGT	2 cut(s)	19, 197
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	3 cut(s)	101, 515, 583
PspFI	CCCAGC	1 cut(s)	575
PspGI	CCWGG	3 cut(s)	101, 515, 583
PspN4I	GGNNCC	4 cut(s)	29, 79, 444, 581
PspPI	GGNCC	6 cut(s)	28, 77, 109, 443, 457, 662
PspPPI	RGGWCCY	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	536
RsaI	GTAC	5 cut(s)	35, 65, 616, 629, 685
RsaNI	GTAC	5 cut(s)	34, 64, 615, 628, 684
SaqAI	TTAA	1 cut(s)	856
Sau3AI	GATC	3 cut(s)	136, 181, 601
Sau96I	GGNCC	6 cut(s)	28, 77, 109, 443, 457, 662
ScaI	AGTACT	3 cut(s)	65, 616, 629
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	5 cut(s)	103, 122, 270, 517, 585
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	3 cut(s)	139, 379, 707
SfcI	CTRYAG	2 cut(s)	46, 420
SinI	GGWCC	5 cut(s)	28, 77, 109, 457, 662
Sse9I	AATT	4 cut(s)	71, 413, 462, 540
SsiI	CCGC	5 cut(s)	5, 41, 231, 639, 705
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	5 cut(s)	101, 120, 268, 515, 583
TaaI	ACNGT	2 cut(s)	68, 352
TaqI	TCGA	2 cut(s)	87, 651
TasI	AATT	4 cut(s)	71, 413, 462, 540
TatI	WGTACW	4 cut(s)	33, 63, 614, 627
Tru1I	TTAA	1 cut(s)	856
Tru9I	TTAA	1 cut(s)	856
TscAI	CASTG	3 cut(s)	678, 731, 743
TseFI	GTSAC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	1 cut(s)	493
TspGWI	ACGGA	2 cut(s)	237, 606
TspRI	CASTG	3 cut(s)	678, 731, 743
VpaK11BI	GGWCC	5 cut(s)	28, 77, 109, 457, 662
XapI	RAATTY	2 cut(s)	71, 413
XspI	CTAG	1 cut(s)	744
ZrmI	AGTACT	3 cut(s)	65, 616, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.