Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016181

Physical Location & Seq

Genomic Coordinates Forward (+)

4033913 .. 4036558

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGGGAAAACCCCAACCGGTCCGCGTTCTGTACTGCGCCGTCTGCAGCTTACCAGCAGAGTACTGCGAATTCGGACCCGATTTCGAGAAATGCAAGCCCTGGTTGATCCAAAACGCCCCGGAGCTTTACCCCGATCTCGTCAAAGATGCTACTGCGAAAGAAGCGGATAGAGTAGCCGATCAGTTGAACGCCACCGGTATCTCTTACGGTAGTGGCGACGGAGCTACTGCTTCTTCAGCACCTAAAGAAGAGGTGAAGCGACTGCCGGGTGGGAAGGTTAAGAAAAAGGAGAAGCTGGAAGTTATTATTGAAAAGGTTACACGTAATAAGCGGAAATCTATCACAACTGTCAAAGGGCTGGACCTTTTTGGTGTCAAGCTTAGTGATGCTTCAAAGAAGTTGGGGAAGAAATTTGCTACAGGAGCTTCTGTTGTTAAGGGGCCAACCGAGAAGGATCAAATTGATGTTCAAGGGGATATATTTTATGATATTGTGGAATTCATTACCGCCACATGGCCTGATGTCCCAGCATCTGCAATTTTCTTTATTGAAGATGGCAGAAAGGTTCCAGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0002190 GO:0002192 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0065003 GO:0070992 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0110017 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SUI1

Protein Analysis

194

Amino Acids

20.95

Weight (kDa)

8.55

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DENR_N	PF21023	10 - 45	5.9e-19	DENR, N-terminal
SUI1	PF01253	101 - 171	6.9e-20	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11900
fragaria_vesca	FvH4_1g07600
malus_domestica	MD02G1080600.v1.1 MD15G1208100.v1.1
prunus_persica	Prupe.7G208600_v2.0.a1
pyrus_communis	pycom02g06390 pycom15g18430
rosa_chinensis	RchiOBHm_Chr2g0093471
rosa_laevigata	RLG00000016409
rosa_multiflora	Rmu_sc0004086.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148060
rosa_rugosa	Rorug02G0036700
rosa_samantha	Rh2BG083700 Rh2DG081800
rosa_wichuraiana	Rw2G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	27
AciI	CCGC	5 cut(s)	5, 25, 167, 334, 510
AclWI	GGATC	2 cut(s)	103, 465
AcsI	RAATTY	3 cut(s)	71, 413, 500
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	2 cut(s)	35, 65
AfiI	CCNNNNNNNGG	1 cut(s)	516
AflIII	ACRYGT	1 cut(s)	323
AgeI	ACCGGT	2 cut(s)	19, 197
AgsI	TTSAA	5 cut(s)	190, 314, 396, 473, 554
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	7 cut(s)	51, 127, 227, 298, 382, 428, 575
AluI	AGCT	7 cut(s)	51, 127, 227, 298, 382, 428, 575
AlwI	GGATC	2 cut(s)	103, 465
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	2 cut(s)	443, 518
ApeKI	GCWGC	1 cut(s)	48
ApoI	RAATTY	3 cut(s)	71, 413, 500
AsiGI	ACCGGT	2 cut(s)	19, 197
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	4 cut(s)	22, 77, 364, 443
AsuC2I	CCSGG	2 cut(s)	122, 270
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	3 cut(s)	22, 77, 364
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	122, 270
BfmI	CTRYAG	2 cut(s)	46, 420
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	3 cut(s)	103, 122, 270
Bme18I	GGWCC	3 cut(s)	22, 77, 364
BmgT120I	GGNCC	4 cut(s)	22, 77, 364, 443
BmiI	GGNNCC	3 cut(s)	79, 444, 570
BmrFI	CCNGG	3 cut(s)	103, 122, 270
BmsI	GCATC	3 cut(s)	139, 379, 542
BpuMI	CCSGG	2 cut(s)	122, 270
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	101, 120
BsaWI	WCCGGW	2 cut(s)	19, 197
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse118I	RCCGGY	2 cut(s)	19, 197
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	101, 120
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	60
BseYI	CCCAGC	1 cut(s)	529
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	445, 520
BshTI	ACCGGT	2 cut(s)	19, 197
BsiSI	CCGG	4 cut(s)	20, 122, 198, 269
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	445, 520
Bsp143I	GATC	4 cut(s)	108, 136, 181, 457
BspACI	CCGC	5 cut(s)	5, 25, 167, 334, 510
BspANI	GGCC	2 cut(s)	445, 520
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	79, 444, 570
BspMAI	CTGCAG	1 cut(s)	50
BspPI	GGATC	2 cut(s)	103, 465
BsrFI	RCCGGY	2 cut(s)	19, 197
BssAI	RCCGGY	2 cut(s)	19, 197
BssECI	CCNNGG	2 cut(s)	101, 120
BssMI	GATC	4 cut(s)	108, 136, 181, 457
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	212, 352
Bst6I	CTCTTC	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	383
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	4 cut(s)	111, 139, 184, 460
BstMBI	GATC	4 cut(s)	108, 136, 181, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 164, 239, 425
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	3 cut(s)	101, 120, 268
BstSFI	CTRYAG	2 cut(s)	46, 420
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	445, 520
Cac8I	GCNNGC	1 cut(s)	98
CaiI	CAGNNNCTG	1 cut(s)	536
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	19, 197
Cfr13I	GGNCC	4 cut(s)	22, 77, 364, 443
CpoI	CGGWCCG	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	34, 64
CspAI	ACCGGT	2 cut(s)	19, 197
CspI	CGGWCCG	1 cut(s)	22
CviAII	CATG	1 cut(s)	516
CviQI	GTAC	2 cut(s)	34, 64
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	4 cut(s)	110, 138, 183, 459
DpnII	GATC	4 cut(s)	108, 136, 181, 457
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco47I	GGWCC	3 cut(s)	22, 77, 364
Eco57I	CTGAAG	1 cut(s)	222
EcoRI	GAATTC	2 cut(s)	71, 500
EcoRII	CCWGG	1 cut(s)	101
FaeI	CATG	1 cut(s)	519
FaiI	YATR	3 cut(s)	482, 489, 517
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	1 cut(s)	515
Fnu4HI	GCNGC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	49
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	49
GsaI	CCCAGC	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	445, 520
HapII	CCGG	4 cut(s)	20, 122, 198, 269
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	519
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	380
HpaII	CCGG	4 cut(s)	20, 122, 198, 269
HphI	GGTGA	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	271, 448
HpyCH4III	ACNGT	2 cut(s)	212, 352
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	48, 96, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 164, 239, 425
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	519
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	4 cut(s)	108, 136, 181, 457
LmnI	GCTCC	3 cut(s)	124, 224, 425
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	3 cut(s)	139, 379, 542
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	4 cut(s)	110, 138, 183, 459
MboI	GATC	4 cut(s)	108, 136, 181, 457
MboII	GAAGA	4 cut(s)	228, 263, 421, 566
MluCI	AATT	5 cut(s)	71, 413, 462, 500, 540
MnlI	CCTC	1 cut(s)	247
MseI	TTAA	3 cut(s)	282, 438, 580
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	4 cut(s)	20, 122, 198, 269
MspR9I	CCNGG	3 cut(s)	103, 122, 270
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	4 cut(s)	45, 164, 239, 425
NciI	CCSGG	2 cut(s)	122, 270
NdeII	GATC	4 cut(s)	108, 136, 181, 457
NlaIII	CATG	1 cut(s)	519
NlaIV	GGNNCC	3 cut(s)	79, 444, 570
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PinAI	ACCGGT	2 cut(s)	19, 197
PkrI	GCNGC	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	79, 444, 570
PspPI	GGNCC	4 cut(s)	22, 77, 364, 443
PstI	CTGCAG	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	35, 65
RsaNI	GTAC	2 cut(s)	34, 64
Rsr2I	CGGWCCG	1 cut(s)	22
RsrII	CGGWCCG	1 cut(s)	22
SaqAI	TTAA	3 cut(s)	282, 438, 580
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	4 cut(s)	108, 136, 181, 457
Sau96I	GGNCC	4 cut(s)	22, 77, 364, 443
ScaI	AGTACT	1 cut(s)	65
ScrFI	CCNGG	3 cut(s)	103, 122, 270
SfaNI	GCATC	3 cut(s)	139, 379, 542
SfcI	CTRYAG	2 cut(s)	46, 420
SinI	GGWCC	3 cut(s)	22, 77, 364
Sse9I	AATT	5 cut(s)	71, 413, 462, 500, 540
SsiI	CCGC	5 cut(s)	5, 25, 167, 334, 510
StyD4I	CCNGG	3 cut(s)	101, 120, 268
TaaI	ACNGT	2 cut(s)	212, 352
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	87
TasI	AATT	5 cut(s)	71, 413, 462, 500, 540
TatI	WGTACW	2 cut(s)	33, 63
Tru1I	TTAA	3 cut(s)	282, 438, 580
Tru9I	TTAA	3 cut(s)	282, 438, 580
TseI	GCWGC	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	493
TspGWI	ACGGA	1 cut(s)	237
VpaK11BI	GGWCC	3 cut(s)	22, 77, 364
XapI	RAATTY	3 cut(s)	71, 413, 500
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.