U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G12000 AT5G12000 AT5G26150 AT5G26150 |
| fragaria_vesca | FvH4_2g31490 FvH4_2g31490 |
| malus_domestica | MD08G1065900.v1.1 MD15G1055500.v1.1 |
| prunus_persica | Prupe.1G408600_v2.0.a1 Prupe.1G408600_v2.0.a1 |
| pyrus_communis | pycom08g05450 |
| rosa_chinensis | RchiOBHm_Chr6g0311301 |
| rosa_laevigata | RLG00000010420 |
| rosa_multiflora | Rmu_co8488183.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00157780 |
| rosa_rugosa | Rorug06G0387100 Rorug06G0387100 Rorug06G0387100 |
| rosa_samantha | Rh6AG501900 Rh6BG512600 Rh6CG518300 Rh6DG504500 |
| rosa_wichuraiana | Rw6G043710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1648, 1717 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1460, 2030 |
| AciI | CCGC | 4 cut(s) | 1052, 1115, 1293, 1581 |
| AclI | AACGTT | 1 cut(s) | 1763 |
| AclWI | GGATC | 3 cut(s) | 352, 682, 835 |
| AcsI | RAATTY | 3 cut(s) | 166, 380, 1972 |
| AcuI | CTGAAG | 2 cut(s) | 1050, 1832 |
| AfaI | GTAC | 4 cut(s) | 525, 1203, 1707, 1787 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 227, 340, 671, 1460, 1795, 2030 |
| AflIII | ACRYGT | 1 cut(s) | 921 |
| AjnI | CCWGG | 1 cut(s) | 2089 |
| AleI | CACNNNNGTG | 1 cut(s) | 38 |
| Alw21I | GWGCWC | 2 cut(s) | 241, 1189 |
| Alw26I | GTCTC | 2 cut(s) | 164, 1348 |
| Alw44I | GTGCAC | 1 cut(s) | 237 |
| AlwI | GGATC | 3 cut(s) | 352, 682, 835 |
| Ama87I | CYCGRG | 1 cut(s) | 1781 |
| AoxI | GGCC | 3 cut(s) | 99, 1065, 1952 |
| ApaLI | GTGCAC | 1 cut(s) | 237 |
| ApeKI | GCWGC | 7 cut(s) | 1037, 1079, 1091, 1364, 1565, 1754, 1843 |
| ApoI | RAATTY | 3 cut(s) | 166, 380, 1972 |
| AseI | ATTAAT | 1 cut(s) | 129 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 736, 2043 |
| AspA2I | CCTAGG | 1 cut(s) | 572 |
| AspLEI | GCGC | 1 cut(s) | 1105 |
| AspS9I | GGNCC | 2 cut(s) | 99, 1301 |
| AsuC2I | CCSGG | 1 cut(s) | 1937 |
| AsuHPI | GGTGA | 5 cut(s) | 5, 376, 490, 561, 1589 |
| AvaI | CYCGRG | 1 cut(s) | 1781 |
| AvaII | GGWCC | 1 cut(s) | 1301 |
| AvrII | CCTAGG | 1 cut(s) | 572 |
| BaeGI | GKGCMC | 1 cut(s) | 241 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 270, 303 |
| BauI | CACGAG | 1 cut(s) | 519 |
| Bbv12I | GWGCWC | 2 cut(s) | 241, 1189 |
| BbvI | GCAGC | 7 cut(s) | 1049, 1066, 1103, 1351, 1552, 1766, 1830 |
| BccI | CCATC | 3 cut(s) | 25, 253, 775 |
| BceAI | ACGGC | 1 cut(s) | 86 |
| BciT130I | CCWGG | 1 cut(s) | 2091 |
| BclI | TGATCA | 2 cut(s) | 123, 1324 |
| BcnI | CCSGG | 1 cut(s) | 1937 |
| BcoDI | GTCTC | 2 cut(s) | 164, 1348 |
| BfaI | CTAG | 6 cut(s) | 38, 272, 573, 1002, 1020, 1655 |
| BfmI | CTRYAG | 4 cut(s) | 1047, 1233, 1566, 1752 |
| BfuAI | ACCTGC | 2 cut(s) | 1648, 1717 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1951 |
| BglII | AGATCT | 2 cut(s) | 371, 2026 |
| BisI | GCNGC | 7 cut(s) | 1038, 1080, 1092, 1365, 1566, 1755, 1844 |
| BlnI | CCTAGG | 1 cut(s) | 572 |
| BlpI | GCTNAGC | 1 cut(s) | 931 |
| BlsI | GCNGC | 7 cut(s) | 1039, 1081, 1093, 1366, 1567, 1756, 1845 |
| Bme1390I | CCNGG | 2 cut(s) | 1937, 2091 |
| Bme18I | GGWCC | 1 cut(s) | 1301 |
| BmeT110I | CYCGRG | 1 cut(s) | 1781 |
| BmgT120I | GGNCC | 2 cut(s) | 99, 1301 |
| BmrFI | CCNGG | 2 cut(s) | 1937, 2091 |
| BmsI | GCATC | 3 cut(s) | 413, 1351, 2084 |
| BoxI | GACNNNNGTC | 1 cut(s) | 53 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2006 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 931 |
| BpuEI | CTTGAG | 3 cut(s) | 890, 1353, 1372 |
| BpuMI | CCSGG | 1 cut(s) | 1937 |
| BsaAI | YACGTR | 3 cut(s) | 242, 310, 1669 |
| BsaI | GGTCTC | 1 cut(s) | 1348 |
| BsaJI | CCNNGG | 2 cut(s) | 572, 915 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 568, 598 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 227, 340, 671, 1460, 1795, 2030 |
| Bse1I | ACTGG | 2 cut(s) | 733, 1304 |
| BseBI | CCWGG | 1 cut(s) | 2091 |
| BseDI | CCNNGG | 2 cut(s) | 572, 915 |
| BseGI | GGATG | 3 cut(s) | 347, 1420, 2099 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 227, 340, 671, 1460, 1795, 2030 |
| BseMII | CTCAG | 6 cut(s) | 420, 795, 870, 945, 1086, 1248 |
| BseNI | ACTGG | 2 cut(s) | 733, 1304 |
| BseRI | GAGGAG | 1 cut(s) | 507 |
| BseSI | GKGCMC | 1 cut(s) | 241 |
| BseXI | GCAGC | 7 cut(s) | 1049, 1066, 1103, 1351, 1552, 1766, 1830 |
| BsgI | GTGCAG | 2 cut(s) | 1093, 2019 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1941 |
| BshFI | GGCC | 3 cut(s) | 101, 1067, 1954 |
| BsiEI | CGRYCG | 1 cut(s) | 1941 |
| BsiHKAI | GWGCWC | 2 cut(s) | 241, 1189 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1781 |
| BsiSI | CCGG | 1 cut(s) | 1937 |
| BslFI | GGGAC | 1 cut(s) | 497 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 227, 340, 671, 1460, 1795, 2030 |
| BsmAI | GTCTC | 2 cut(s) | 164, 1348 |
| BsmBI | CGTCTC | 1 cut(s) | 164 |
| BsmFI | GGGAC | 1 cut(s) | 497 |
| BsmI | GAATGC | 1 cut(s) | 1030 |
| BsnI | GGCC | 3 cut(s) | 101, 1067, 1954 |
| Bso31I | GGTCTC | 1 cut(s) | 1348 |
| BsoBI | CYCGRG | 1 cut(s) | 1781 |
| Bsp1286I | GDGCHC | 2 cut(s) | 241, 1189 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 931 |
| Bsp19I | CCATGG | 1 cut(s) | 915 |
| BspACI | CCGC | 4 cut(s) | 1052, 1115, 1293, 1581 |
| BspANI | GGCC | 3 cut(s) | 101, 1067, 1954 |
| BspCNI | CTCAG | 6 cut(s) | 421, 796, 871, 944, 1087, 1249 |
| BspMAI | CTGCAG | 2 cut(s) | 1570, 1756 |
| BspMI | ACCTGC | 2 cut(s) | 1648, 1717 |
| BspPI | GGATC | 3 cut(s) | 352, 682, 835 |
| BspTNI | GGTCTC | 1 cut(s) | 1348 |
| BsrI | ACTGG | 2 cut(s) | 733, 1304 |
| BssECI | CCNNGG | 2 cut(s) | 572, 915 |
| BssSI | CACGAG | 1 cut(s) | 519 |
| BssT1I | CCWWGG | 2 cut(s) | 572, 915 |
| Bst2BI | CACGAG | 1 cut(s) | 519 |
| Bst2UI | CCWGG | 1 cut(s) | 2091 |
| Bst4CI | ACNGT | 6 cut(s) | 52, 80, 601, 1184, 1383, 1729 |
| Bst6I | CTCTTC | 5 cut(s) | 119, 478, 1026, 1156, 2006 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 953 |
| BstBAI | YACGTR | 3 cut(s) | 242, 310, 1669 |
| BstC8I | GCNNGC | 2 cut(s) | 937, 1143 |
| BstDSI | CCRYGG | 1 cut(s) | 915 |
| BstF5I | GGATG | 3 cut(s) | 347, 1420, 2099 |
| BstHHI | GCGC | 1 cut(s) | 1105 |
| BstMAI | GTCTC | 2 cut(s) | 164, 1348 |
| BstMCI | CGRYCG | 1 cut(s) | 1941 |
| BstNI | CCWGG | 1 cut(s) | 2091 |
| BstNSI | RCATGY | 1 cut(s) | 925 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 53 |
| BstSCI | CCNGG | 2 cut(s) | 1935, 2089 |
| BstSFI | CTRYAG | 4 cut(s) | 1047, 1233, 1566, 1752 |
| BstSLI | GKGCMC | 1 cut(s) | 241 |
| BstV1I | GCAGC | 7 cut(s) | 1049, 1066, 1103, 1351, 1552, 1766, 1830 |
| BstX2I | RGATCY | 2 cut(s) | 371, 2026 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1542 |
| BstYI | RGATCY | 2 cut(s) | 371, 2026 |
| BsuRI | GGCC | 3 cut(s) | 101, 1067, 1954 |
| BtgI | CCRYGG | 1 cut(s) | 915 |
| BtsCI | GGATG | 3 cut(s) | 347, 1420, 2099 |
| BtsI | GCAGTG | 1 cut(s) | 1857 |
| BtsIMutI | CAGTG | 5 cut(s) | 989, 1687, 1722, 1734, 1857 |
| BveI | ACCTGC | 2 cut(s) | 1648, 1717 |
| Cac8I | GCNNGC | 2 cut(s) | 937, 1143 |
| CfoI | GCGC | 1 cut(s) | 1105 |
| Cfr13I | GGNCC | 2 cut(s) | 99, 1301 |
| CseI | GACGC | 2 cut(s) | 1701, 1741 |
| Csp6I | GTAC | 4 cut(s) | 524, 1202, 1706, 1786 |
| CviQI | GTAC | 4 cut(s) | 524, 1202, 1706, 1786 |
| Eam1104I | CTCTTC | 5 cut(s) | 119, 478, 1026, 1156, 2006 |
| EarI | CTCTTC | 5 cut(s) | 119, 478, 1026, 1156, 2006 |
| EciI | GGCGGA | 2 cut(s) | 1130, 1308 |
| Eco130I | CCWWGG | 2 cut(s) | 572, 915 |
| Eco31I | GGTCTC | 1 cut(s) | 1348 |
| Eco47I | GGWCC | 1 cut(s) | 1301 |
| Eco57I | CTGAAG | 2 cut(s) | 1050, 1832 |
| Eco88I | CYCGRG | 1 cut(s) | 1781 |
| EcoRII | CCWGG | 1 cut(s) | 2089 |
| EcoT14I | CCWWGG | 2 cut(s) | 572, 915 |
| EcoT22I | ATGCAT | 1 cut(s) | 657 |
| ErhI | CCWWGG | 2 cut(s) | 572, 915 |
| Esp3I | CGTCTC | 1 cut(s) | 164 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 933, 965 |
| FaqI | GGGAC | 1 cut(s) | 497 |
| FbaI | TGATCA | 2 cut(s) | 123, 1324 |
| Fnu4HI | GCNGC | 7 cut(s) | 1038, 1080, 1092, 1365, 1566, 1755, 1844 |
| FokI | GGATG | 2 cut(s) | 334, 1407 |
| Fsp4HI | GCNGC | 7 cut(s) | 1038, 1080, 1092, 1365, 1566, 1755, 1844 |
| FspBI | CTAG | 6 cut(s) | 38, 272, 573, 1002, 1020, 1655 |
| GlaI | GCGC | 1 cut(s) | 1104 |
| GluI | GCNGC | 7 cut(s) | 1038, 1080, 1092, 1365, 1566, 1755, 1844 |
| HaeIII | GGCC | 3 cut(s) | 101, 1067, 1954 |
| HapII | CCGG | 1 cut(s) | 1937 |
| HgaI | GACGC | 2 cut(s) | 1701, 1741 |
| HhaI | GCGC | 1 cut(s) | 1105 |
| Hin6I | GCGC | 1 cut(s) | 1103 |
| HinP1I | GCGC | 1 cut(s) | 1103 |
| HincII | GTYRAC | 2 cut(s) | 861, 1806 |
| HindII | GTYRAC | 2 cut(s) | 861, 1806 |
| HinfI | GANTC | 8 cut(s) | 142, 358, 577, 752, 845, 1166, 1509, 1867 |
| HpaI | GTTAAC | 1 cut(s) | 1806 |
| HpaII | CCGG | 1 cut(s) | 1937 |
| HphI | GGTGA | 5 cut(s) | 5, 376, 490, 561, 1589 |
| Hpy166II | GTNNAC | 8 cut(s) | 43, 239, 313, 469, 524, 569, 861, 1806 |
| Hpy188I | TCNGA | 7 cut(s) | 22, 748, 760, 841, 1819, 1851, 2060 |
| Hpy188III | TCNNGA | 8 cut(s) | 272, 477, 605, 1351, 1454, 1628, 1655, 2048 |
| Hpy8I | GTNNAC | 8 cut(s) | 43, 239, 313, 469, 524, 569, 861, 1806 |
| Hpy99I | CGWCG | 3 cut(s) | 52, 107, 287 |
| HpyAV | CCTTC | 8 cut(s) | 537, 1057, 1118, 1128, 1283, 1600, 1604, 2071 |
| HpyCH4III | ACNGT | 6 cut(s) | 52, 80, 601, 1184, 1383, 1729 |
| HpyCH4IV | ACGT | 8 cut(s) | 241, 285, 309, 399, 536, 1668, 1686, 1763 |
| HpySE526I | ACGT | 8 cut(s) | 241, 285, 309, 399, 536, 1668, 1686, 1763 |
| HspAI | GCGC | 1 cut(s) | 1103 |
| Ksp22I | TGATCA | 2 cut(s) | 123, 1324 |
| KspAI | GTTAAC | 1 cut(s) | 1806 |
| LmnI | GCTCC | 1 cut(s) | 1494 |
| Lsp1109I | GCAGC | 7 cut(s) | 1049, 1066, 1103, 1351, 1552, 1766, 1830 |
| LweI | GCATC | 3 cut(s) | 413, 1351, 2084 |
| MaeI | CTAG | 6 cut(s) | 38, 272, 573, 1002, 1020, 1655 |
| MaeII | ACGT | 8 cut(s) | 241, 285, 309, 399, 536, 1668, 1686, 1763 |
| MaeIII | GTNAC | 8 cut(s) | 80, 325, 390, 1217, 1628, 1682, 1729, 1769 |
| MflI | RGATCY | 2 cut(s) | 371, 2026 |
| MhlI | GDGCHC | 2 cut(s) | 241, 1189 |
| MluCI | AATT | 6 cut(s) | 130, 166, 200, 380, 688, 1972 |
| MlyI | GAGTC | 5 cut(s) | 367, 586, 854, 1503, 1876 |
| MmeI | TCCRAC | 3 cut(s) | 660, 1101, 1669 |
| Mph1103I | ATGCAT | 1 cut(s) | 657 |
| MroXI | GAANNNNTTC | 2 cut(s) | 736, 2043 |
| MseI | TTAA | 8 cut(s) | 129, 203, 893, 951, 978, 1805, 1970, 2063 |
| MslI | CAYNNNNRTG | 3 cut(s) | 38, 920, 1540 |
| MspA1I | CMGCKG | 1 cut(s) | 1094 |
| MspI | CCGG | 1 cut(s) | 1937 |
| MspR9I | CCNGG | 2 cut(s) | 1937, 2091 |
| Mva1269I | GAATGC | 1 cut(s) | 1030 |
| MvaI | CCWGG | 1 cut(s) | 2091 |
| NciI | CCSGG | 1 cut(s) | 1937 |
| NcoI | CCATGG | 1 cut(s) | 915 |
| NmuCI | GTSAC | 6 cut(s) | 80, 325, 390, 1628, 1682, 1729 |
| NsiI | ATGCAT | 1 cut(s) | 657 |
| NspI | RCATGY | 1 cut(s) | 925 |
| OliI | CACNNNNGTG | 1 cut(s) | 38 |
| PciI | ACATGT | 1 cut(s) | 921 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 282, 860 |
| PctI | GAATGC | 1 cut(s) | 1030 |
| PdmI | GAANNNNTTC | 2 cut(s) | 736, 2043 |
| PfeI | GAWTC | 3 cut(s) | 142, 752, 1166 |
| PflFI | GACNNNGTC | 1 cut(s) | 1937 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1460, 2030 |
| PkrI | GCNGC | 7 cut(s) | 1039, 1081, 1093, 1366, 1567, 1756, 1845 |
| PleI | GAGTC | 5 cut(s) | 366, 585, 853, 1503, 1875 |
| PpsI | GAGTC | 5 cut(s) | 366, 585, 853, 1503, 1875 |
| Ppu21I | YACGTR | 3 cut(s) | 242, 310, 1669 |
| PscI | ACATGT | 1 cut(s) | 921 |
| PshAI | GACNNNNGTC | 1 cut(s) | 53 |
| PshBI | ATTAAT | 1 cut(s) | 129 |
| Psp1406I | AACGTT | 1 cut(s) | 1763 |
| Psp6I | CCWGG | 1 cut(s) | 2089 |
| PspGI | CCWGG | 1 cut(s) | 2089 |
| PspPI | GGNCC | 2 cut(s) | 99, 1301 |
| PstI | CTGCAG | 2 cut(s) | 1570, 1756 |
| PsuI | RGATCY | 2 cut(s) | 371, 2026 |
| PsyI | GACNNNGTC | 1 cut(s) | 1937 |
| PvuII | CAGCTG | 1 cut(s) | 1094 |
| RsaI | GTAC | 4 cut(s) | 525, 1203, 1707, 1787 |
| RsaNI | GTAC | 4 cut(s) | 524, 1202, 1706, 1786 |
| RseI | CAYNNNNRTG | 3 cut(s) | 38, 920, 1540 |
| SaqAI | TTAA | 8 cut(s) | 129, 203, 893, 951, 978, 1805, 1970, 2063 |
| SatI | GCNGC | 7 cut(s) | 1038, 1080, 1092, 1365, 1566, 1755, 1844 |
| Sau96I | GGNCC | 2 cut(s) | 99, 1301 |
| SchI | GAGTC | 5 cut(s) | 367, 586, 854, 1503, 1876 |
| ScrFI | CCNGG | 2 cut(s) | 1937, 2091 |
| SduI | GDGCHC | 2 cut(s) | 241, 1189 |
| SfaNI | GCATC | 3 cut(s) | 413, 1351, 2084 |
| SfcI | CTRYAG | 4 cut(s) | 1047, 1233, 1566, 1752 |
| SinI | GGWCC | 1 cut(s) | 1301 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 38, 920, 1540 |
| SmlI | CTYRAG | 3 cut(s) | 905, 1351, 1368 |
| SmoI | CTYRAG | 3 cut(s) | 905, 1351, 1368 |
| Sse9I | AATT | 6 cut(s) | 130, 166, 200, 380, 688, 1972 |
| SsiI | CCGC | 4 cut(s) | 1052, 1115, 1293, 1581 |
| SspMI | CTAG | 6 cut(s) | 38, 272, 573, 1002, 1020, 1655 |
| StyD4I | CCNGG | 2 cut(s) | 1935, 2089 |
| StyI | CCWWGG | 2 cut(s) | 572, 915 |
| TaaI | ACNGT | 6 cut(s) | 52, 80, 601, 1184, 1383, 1729 |
| TaiI | ACGT | 8 cut(s) | 244, 288, 312, 402, 539, 1671, 1689, 1766 |
| TaqI | TCGA | 6 cut(s) | 47, 105, 1398, 1895, 1905, 1959 |
| TasI | AATT | 6 cut(s) | 130, 166, 200, 380, 688, 1972 |
| TfiI | GAWTC | 3 cut(s) | 142, 752, 1166 |
| Tru1I | TTAA | 8 cut(s) | 129, 203, 893, 951, 978, 1805, 1970, 2063 |
| Tru9I | TTAA | 8 cut(s) | 129, 203, 893, 951, 978, 1805, 1970, 2063 |
| TscAI | CASTG | 5 cut(s) | 989, 1687, 1722, 1734, 1864 |
| TseFI | GTSAC | 6 cut(s) | 80, 325, 390, 1628, 1682, 1729 |
| TseI | GCWGC | 7 cut(s) | 1037, 1079, 1091, 1364, 1565, 1754, 1843 |
| Tsp45I | GTSAC | 6 cut(s) | 80, 325, 390, 1628, 1682, 1729 |
| TspGWI | ACGGA | 3 cut(s) | 400, 430, 1205 |
| TspRI | CASTG | 5 cut(s) | 989, 1687, 1722, 1734, 1864 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1937 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1460, 2030 |
| VneI | GTGCAC | 1 cut(s) | 237 |
| VpaK11BI | GGWCC | 1 cut(s) | 1301 |
| VspI | ATTAAT | 1 cut(s) | 129 |
| XapI | RAATTY | 3 cut(s) | 166, 380, 1972 |
| XbaI | TCTAGA | 2 cut(s) | 271, 1654 |
| XceI | RCATGY | 1 cut(s) | 925 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 337, 1870 |
| XmaJI | CCTAGG | 1 cut(s) | 572 |
| XmnI | GAANNNNTTC | 2 cut(s) | 736, 2043 |
| XspI | CTAG | 6 cut(s) | 38, 272, 573, 1002, 1020, 1655 |
| Zsp2I | ATGCAT | 1 cut(s) | 657 |