Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8488183.1

Orthogroup ID

OG0008194

Physical Location & Seq

Genomic Coordinates Reverse (-)

48 .. 1412

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8488183.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atggccactcccaattccgcgtatgacgactgtccgccgatcaactccacggcggtggccgtcgacaaggacaacaagaacagcaacttggccgtgcgatgggccattgatcatctttcgatctcgcaaccttacctcattttaatccatgtcaggaataaaagtcatcaccacgatggtgatggaggcgatcatgatccttacactgtgttcattcctttccgtggatactgtgctcgtaagggggttcaaatgaaagaggtcatccttgatgaacatgatgtggctagagcacttttggattacatcaacaacaactacattaacaatattgtagttggtgcatcaacgaggaatgctcttacaaggaggctcaaaggtaatatggatgttgcgaacatcttgacaaaatctgtgccagagttttgttcggtatatgtgatacaaaaagggaagatgctctcagtgcggacggctaagaggcctgtggttaatactgctgcaccaccaaaacaaccgatcgtgcagggactcccgcctcatatgccagctgaattaagtggaggagaaaatggagttaggcttccaaaaagggaaagaacaaggaatggtccagagaaaatggttgcaatacgcgagaggacgaggagtgcgccaacaaatctgacactggatcagattgacattcaaagccatgaatcaggatcaaggtcttcagtaagtagtgcttacaattcaaatgcagaagaaaatgagttttcaggcccaattcctccatatggatcactggatatgtcttcccaaaacttggatttctgcagtccgtcctgttctcccagggactcatccagacaatctgcagtaagtgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

290

Amino Acids

31.82

Weight (kDa)

8.55

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12000 AT5G12000 AT5G26150 AT5G26150
fragaria_vesca	FvH4_2g31490 FvH4_2g31490
malus_domestica	MD08G1065900.v1.1 MD15G1055500.v1.1
prunus_persica	Prupe.1G408600_v2.0.a1 Prupe.1G408600_v2.0.a1
pyrus_communis	pycom08g05450
rosa_chinensis	RchiOBHm_Chr6g0311301
rosa_laevigata	RLG00000010420
rosa_multiflora	Rmu_co8488183.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157780
rosa_rugosa	Rorug06G0387100 Rorug06G0387100 Rorug06G0387100
rosa_samantha	Rh6AG501900 Rh6BG512600 Rh6CG518300 Rh6DG504500
rosa_wichuraiana	Rw6G043710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	808
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	2 cut(s)	20, 636
AciI	CCGC	5 cut(s)	18, 35, 53, 469, 536
AclWI	GGATC	4 cut(s)	191, 681, 712, 790
AcoI	YGGCCR	3 cut(s)	3, 57, 90
AcuI	CTGAAG	1 cut(s)	699
AfiI	CCNNNNNNNGG	4 cut(s)	99, 224, 779, 808
AgsI	TTSAA	3 cut(s)	251, 689, 738
AjnI	CCWGG	1 cut(s)	836
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AleI	CACNNNNGTG	2 cut(s)	53, 177
AluBI	AGCT	1 cut(s)	551
AluI	AGCT	1 cut(s)	551
Alw21I	GWGCWC	2 cut(s)	238, 295
AlwI	GGATC	4 cut(s)	191, 681, 712, 790
AoxI	GGCC	6 cut(s)	3, 57, 90, 102, 482, 763
ApeKI	GCWGC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	3 cut(s)	102, 611, 764
AsuHPI	GGTGA	2 cut(s)	161, 191
AvaII	GGWCC	1 cut(s)	611
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	705, 789
Bbv12I	GWGCWC	2 cut(s)	238, 295
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	3 cut(s)	93, 170, 176
BceAI	ACGGC	4 cut(s)	44, 66, 77, 489
BciT130I	CCWGG	1 cut(s)	838
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	109
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	817, 858
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	838
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	3 cut(s)	102, 611, 764
BmrFI	CCNGG	1 cut(s)	838
BmsI	GCATC	2 cut(s)	353, 447
BoxI	GACNNNNGTC	1 cut(s)	30
BpiI	GAAGAC	2 cut(s)	705, 789
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	48, 223, 836, 837
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 224, 779, 808
Bse1I	ACTGG	2 cut(s)	675, 792
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	838
BseDI	CCNNGG	4 cut(s)	48, 223, 836, 837
BseGI	GGATG	3 cut(s)	264, 394, 845
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	4 cut(s)	99, 224, 779, 808
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	675, 792
BseRI	GAGGAG	2 cut(s)	579, 661
BseXI	GCAGC	1 cut(s)	487
BsgI	GTGCAG	2 cut(s)	486, 545
Bsh1236I	CGCG	2 cut(s)	20, 636
Bsh1285I	CGRYCG	1 cut(s)	522
BshFI	GGCC	6 cut(s)	5, 59, 92, 104, 484, 765
BsiEI	CGRYCG	1 cut(s)	522
BsiHKAI	GWGCWC	2 cut(s)	238, 295
BslFI	GGGAC	2 cut(s)	543, 854
BslI	CCNNNNNNNGG	4 cut(s)	99, 224, 779, 808
BsmFI	GGGAC	2 cut(s)	543, 854
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	6 cut(s)	5, 59, 92, 104, 484, 765
Bsp1286I	GDGCHC	2 cut(s)	238, 295
Bsp143I	GATC	9 cut(s)	39, 109, 120, 190, 196, 519, 673, 704, 782
BspACI	CCGC	5 cut(s)	18, 35, 53, 469, 536
BspANI	GGCC	6 cut(s)	5, 59, 92, 104, 484, 765
BspCNI	CTCAG	1 cut(s)	476
BspFNI	CGCG	2 cut(s)	20, 636
BspHI	TCATGA	1 cut(s)	193
BspMAI	CTGCAG	2 cut(s)	821, 862
BspPI	GGATC	4 cut(s)	191, 681, 712, 790
BsrI	ACTGG	2 cut(s)	675, 792
BssECI	CCNNGG	4 cut(s)	48, 223, 836, 837
BssMI	GATC	9 cut(s)	39, 109, 120, 190, 196, 519, 673, 704, 782
Bst2UI	CCWGG	1 cut(s)	838
Bst4CI	ACNGT	3 cut(s)	32, 208, 233
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	2 cut(s)	463, 477
BstDSI	CCRYGG	2 cut(s)	48, 223
BstF5I	GGATG	3 cut(s)	264, 394, 845
BstFNI	CGCG	2 cut(s)	20, 636
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	9 cut(s)	42, 112, 123, 193, 199, 522, 676, 707, 785
BstMBI	GATC	9 cut(s)	39, 109, 120, 190, 196, 519, 673, 704, 782
BstMCI	CGRYCG	1 cut(s)	522
BstMWI	GCNNNNNNNGC	3 cut(s)	466, 544, 866
BstNI	CCWGG	1 cut(s)	838
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	836
BstSFI	CTRYAG	2 cut(s)	817, 858
BstUI	CGCG	2 cut(s)	20, 636
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	2 cut(s)	705, 789
BstXI	CCANNNNNNTGG	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	6 cut(s)	5, 59, 92, 104, 484, 765
BtgI	CCRYGG	2 cut(s)	48, 223
BtgZI	GCGATG	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	264, 394, 845
BtsIMutI	CAGTG	4 cut(s)	204, 471, 668, 785
Cac8I	GCNNGC	1 cut(s)	549
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	3 cut(s)	102, 611, 764
CviAII	CATG	4 cut(s)	149, 194, 278, 695
DdeI	CTNAG	2 cut(s)	463, 477
DpnI	GATC	9 cut(s)	41, 111, 122, 192, 198, 521, 675, 706, 784
DpnII	GATC	9 cut(s)	39, 109, 120, 190, 196, 519, 673, 704, 782
EaeI	YGGCCR	3 cut(s)	3, 57, 90
EciI	GGCGGA	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	836
FaeI	CATG	4 cut(s)	152, 197, 281, 698
FalI	AAGNNNNNCTT	2 cut(s)	712, 744
FaqI	GGGAC	2 cut(s)	543, 854
FatI	CATG	4 cut(s)	148, 193, 277, 694
FauI	CCCGC	1 cut(s)	543
FauNDI	CATATG	2 cut(s)	543, 778
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	3 cut(s)	251, 401, 832
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	1 cut(s)	501
HaeIII	GGCC	6 cut(s)	5, 59, 92, 104, 484, 765
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	4 cut(s)	152, 197, 281, 698
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	531, 698, 842
HphI	GGTGA	2 cut(s)	161, 191
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	666, 678
Hpy188III	TCNNGA	6 cut(s)	154, 194, 403, 614, 702, 849
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4III	ACNGT	3 cut(s)	32, 208, 233
HpyCH4V	TGCA	8 cut(s)	344, 503, 526, 629, 743, 819, 860, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	466, 544, 866
HpyF3I	CTNAG	2 cut(s)	463, 477
Hsp92II	CATG	4 cut(s)	152, 197, 281, 698
HspAI	GCGC	1 cut(s)	653
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	9 cut(s)	39, 109, 120, 190, 196, 519, 673, 704, 782
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	2 cut(s)	353, 447
MaeI	CTAG	1 cut(s)	288
MalI	GATC	9 cut(s)	41, 111, 122, 192, 198, 521, 675, 706, 784
MboI	GATC	9 cut(s)	39, 109, 120, 190, 196, 519, 673, 704, 782
MboII	GAAGA	4 cut(s)	466, 705, 758, 789
MhlI	GDGCHC	2 cut(s)	238, 295
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	13, 554, 733, 768
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	525, 836
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	143, 324, 492, 557
MslI	CAYNNNNRTG	3 cut(s)	53, 174, 177
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	838
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	838
MvnI	CGCG	2 cut(s)	20, 636
MwoI	GCNNNNNNNGC	3 cut(s)	466, 544, 866
NdeI	CATATG	2 cut(s)	543, 778
NdeII	GATC	9 cut(s)	39, 109, 120, 190, 196, 519, 673, 704, 782
NlaIII	CATG	4 cut(s)	152, 197, 281, 698
OliI	CACNNNNGTG	2 cut(s)	53, 177
PagI	TCATGA	1 cut(s)	193
PasI	CCCWGGG	1 cut(s)	837
PceI	AGGCCT	1 cut(s)	484
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	698
PflMI	CCANNNNNTGG	1 cut(s)	808
PkrI	GCNGC	1 cut(s)	502
Ple19I	CGATCG	1 cut(s)	522
PleI	GAGTC	2 cut(s)	525, 836
PpsI	GAGTC	2 cut(s)	525, 836
PshAI	GACNNNNGTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	836
PspGI	CCWGG	1 cut(s)	836
PspPI	GGNCC	3 cut(s)	102, 611, 764
PstI	CTGCAG	2 cut(s)	821, 862
PvuI	CGATCG	1 cut(s)	522
PvuII	CAGCTG	1 cut(s)	551
RseI	CAYNNNNRTG	3 cut(s)	53, 174, 177
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	4 cut(s)	143, 324, 492, 557
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	9 cut(s)	39, 109, 120, 190, 196, 519, 673, 704, 782
Sau96I	GGNCC	3 cut(s)	102, 611, 764
SchI	GAGTC	2 cut(s)	525, 836
ScrFI	CCNGG	1 cut(s)	838
SduI	GDGCHC	2 cut(s)	238, 295
SetI	ASST	6 cut(s)	133, 138, 264, 382, 553, 713
SfaNI	GCATC	2 cut(s)	353, 447
SfcI	CTRYAG	2 cut(s)	817, 858
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	3 cut(s)	53, 174, 177
Sse9I	AATT	4 cut(s)	13, 554, 733, 768
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	5 cut(s)	18, 35, 53, 469, 536
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	836
TaaI	ACNGT	3 cut(s)	32, 208, 233
TaqI	TCGA	2 cut(s)	63, 119
TasI	AATT	4 cut(s)	13, 554, 733, 768
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	4 cut(s)	143, 324, 492, 557
Tru9I	TTAA	4 cut(s)	143, 324, 492, 557
TscAI	CASTG	4 cut(s)	211, 471, 675, 792
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	4 cut(s)	202, 269, 288, 711
TspGWI	ACGGA	2 cut(s)	212, 813
TspRI	CASTG	4 cut(s)	211, 471, 675, 792
Van91I	CCANNNNNTGG	1 cut(s)	808
VpaK11BI	GGWCC	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.