AT5G13160
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
4176506 .. 4180009
3504 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13160.1

Sequence Viewer

Length: 1371 bp
ATGGGTTGTTTCTCGTGTTTTGATTCGAGTGATGACGAGAAGCTGAATCCAGTTGATGAATCTAATCATGGTCAGAAGAAACAATCACAACCGACAGTATCCAATAACATATCTGGACTCCCTTCAGGTGGGGAGAAGCTTAGCTCAAAGACCAATGGAGGATCAAAAAGGGAGCTACTGCTTCCAAGGGATGGACTTGGACAAATTGCTGCTCATACATTTGCTTTCCGCGAGCTTGCTGCTGCAACTATGAACTTTCATCCTGACACTTTCTTAGGCGAAGGTGGATTTGGACGTGTCTACAAAGGAAGGCTTGACAGCACCGGTCAGGTTGTTGCTGTTAAACAACTAGACAGGAATGGTCTACAAGGTAACAGAGAATTTCTGGTAGAGGTTCTTATGCTCAGTCTTCTTCATCATCCCAACTTAGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAACGCCTCTTGGTCTACGAGTTTATGCCGTTAGGATCATTGGAAGATCACCTCCACGATCTTCCACCGGATAAGGAGGCCTTAGATTGGAACATGAGAATGAAAATAGCTGCTGGTGCGGCGAAAGGATTGGAATTTCTACATGATAAGGCAAACCCTCCGGTTATTTATAGAGATTTTAAGTCATCAAATATTTTACTGGATGAGGGTTTCCACCCTAAGCTTTCTGATTTTGGACTTGCTAAACTCGGACCAACGGGAGACAAATCTCATGTCTCCACTAGAGTTATGGGAACTTATGGTTATTGTGCTCCCGAGTACGCAATGACGGGACAATTGACAGTAAAATCAGATGTCTACAGTTTTGGTGTGGTTTTTCTCGAGCTCATTACTGGTCGCAAAGCTATAGACAGCGAGATGCCTCATGGAGAGCAGAACCTGGTGGCTTGGGCTCGCCCATTGTTCAACGACAGGCGAAAGTTCATAAAACTGGCTGATCCAAGGTTAAAGGGGCGGTTTCCAACGCGTGCACTCTACCAAGCTTTAGCTGTGGCATCAATGTGCATCCAAGAACAGGCGGCTACACGTCCTCTCATAGCAGATGTTGTCACTGCACTCTCCTATCTTGCAAACCAAGCTTATGATCCAAGTAAAGATGATAGTAGAAGAAACCGGGATGAAAGAGGTGCAAGGTTAATAACAAGGAACGACGATGGAGGTGGCTCGGGAAGTAAATTCGATTTAGAAGGTTCAGAGAAAGAAGATTCACCGAGAGAGACAGCTCGGATATTGAACCGAGATATCAATAGGGAGCGTGCGGTTGCAGAGGCTAAGATGTGGGGAGAGAGTTTGAGGGAGAAACGAAGACAGAGCGAGCAGGGTACTTCAGAGAGCAACAGTACCGGGTAG

Protein Analysis

456

Amino Acids

50.38

Weight (kDa)

6.44

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 89 - 297 4.2e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 91 - 357 4.6e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 191
AccI GTMKAC 4 cut(s) 300, 364, 477, 819
AccII CGCG 2 cut(s) 231, 988
AciI CCGC 5 cut(s) 229, 581, 976, 1040, 1280
AclWI GGATC 4 cut(s) 169, 505, 953, 1100
AcsI RAATTY 3 cut(s) 380, 596, 1196
AcuI CTGAAG 2 cut(s) 108, 1332
AfaI GTAC 3 cut(s) 782, 1345, 1363
AfiI CCNNNNNNNGG 4 cut(s) 128, 191, 549, 1036
AflIII ACRYGT 3 cut(s) 295, 986, 1046
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 2 cut(s) 928, 1255
AjiI CACGTC 2 cut(s) 296, 1049
AjnI CCWGG 1 cut(s) 900
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
Alw21I GWGCWC 3 cut(s) 775, 849, 994
Alw26I GTCTC 3 cut(s) 717, 742, 1232
Alw44I GTGCAC 1 cut(s) 990
AlwI GGATC 4 cut(s) 169, 505, 953, 1100
AlwNI CAGNNNCTG 1 cut(s) 901
Ama87I CYCGRG 3 cut(s) 776, 842, 1186
AoxI GGCC 1 cut(s) 540
ApaLI GTGCAC 1 cut(s) 990
ApeKI GCWGC 4 cut(s) 209, 239, 242, 572
ApoI RAATTY 3 cut(s) 380, 596, 1196
ArsI GACNNNNNNTTYG 2 cut(s) 720, 752
AsiGI ACCGGT 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 713
AsuC2I CCSGG 2 cut(s) 1136, 1366
AsuHPI GGTGA 2 cut(s) 503, 1221
AvaI CYCGRG 3 cut(s) 776, 842, 1186
AvaII GGWCC 1 cut(s) 713
BaeGI GKGCMC 1 cut(s) 994
BanII GRGCYC 2 cut(s) 849, 916
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 2 cut(s) 401, 1333
Bbv12I GWGCWC 3 cut(s) 775, 849, 994
BbvI GCAGC 4 cut(s) 196, 226, 229, 559
BccI CCATC 3 cut(s) 185, 449, 1169
BceAI ACGGC 1 cut(s) 475
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 902
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 2 cut(s) 1136, 1366
BcoDI GTCTC 3 cut(s) 717, 742, 1232
BfaI CTAG 2 cut(s) 350, 744
BfmI CTRYAG 2 cut(s) 820, 867
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 6 cut(s) 210, 240, 243, 573, 582, 1041
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 6 cut(s) 211, 241, 244, 574, 583, 1042
Bme1390I CCNGG 3 cut(s) 902, 1136, 1366
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 3 cut(s) 776, 842, 1186
BmgBI CACGTC 2 cut(s) 296, 1049
BmgT120I GGNCC 1 cut(s) 713
BmrFI CCNGG 3 cut(s) 902, 1136, 1366
BmsI GCATC 3 cut(s) 870, 1025, 1035
BpiI GAAGAC 2 cut(s) 401, 1333
Bpu10I CCTNAGC 1 cut(s) 681
Bpu1102I GCTNAGC 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 1136, 1366
BsaBI GATNNNNATC 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 185, 962
BsaWI WCCGGW 3 cut(s) 323, 529, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 191, 549, 1036
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 4 cut(s) 50, 666, 859, 957
Bse3DI GCAATG 1 cut(s) 792
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 902
BseDI CCNNGG 2 cut(s) 185, 962
BseGI GGATG 6 cut(s) 196, 259, 418, 670, 1026, 1144
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 4 cut(s) 128, 191, 549, 1036
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 1 cut(s) 418
BseNI ACTGG 4 cut(s) 50, 666, 859, 957
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 4 cut(s) 196, 226, 229, 559
BsgI GTGCAG 1 cut(s) 1059
Bsh1236I CGCG 2 cut(s) 231, 988
BshFI GGCC 1 cut(s) 542
BshTI ACCGGT 1 cut(s) 323
BsiHKAI GWGCWC 3 cut(s) 775, 849, 994
BsiHKCI CYCGRG 3 cut(s) 776, 842, 1186
BsiSI CCGG 5 cut(s) 324, 530, 623, 1135, 1365
BslFI GGGAC 1 cut(s) 807
BslI CCNNNNNNNGG 4 cut(s) 128, 191, 549, 1036
BsmAI GTCTC 3 cut(s) 717, 742, 1232
BsmFI GGGAC 1 cut(s) 807
BsnI GGCC 1 cut(s) 542
BsoBI CYCGRG 3 cut(s) 776, 842, 1186
Bsp1286I GDGCHC 4 cut(s) 775, 849, 916, 994
Bsp143I GATC 7 cut(s) 161, 460, 497, 508, 520, 958, 1105
Bsp1720I GCTNAGC 1 cut(s) 140
BspACI CCGC 5 cut(s) 229, 581, 976, 1040, 1280
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 1 cut(s) 417
BspFNI CGCG 2 cut(s) 231, 988
BspPI GGATC 4 cut(s) 169, 505, 953, 1100
BsrDI GCAATG 1 cut(s) 792
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 4 cut(s) 50, 666, 859, 957
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 185, 962
BssMI GATC 7 cut(s) 161, 460, 497, 508, 520, 958, 1105
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 2 cut(s) 185, 962
Bst2BI CACGAG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 902
Bst4CI ACNGT 4 cut(s) 97, 805, 824, 1361
BstC8I GCNNGC 6 cut(s) 233, 237, 916, 990, 1278, 1337
BstDEI CTNAG 7 cut(s) 140, 274, 404, 427, 544, 681, 1293
BstF5I GGATG 6 cut(s) 196, 259, 418, 670, 1026, 1144
BstFNI CGCG 2 cut(s) 231, 988
BstKTI GATC 7 cut(s) 164, 463, 500, 511, 523, 961, 1108
BstMAI GTCTC 3 cut(s) 717, 742, 1232
BstMBI GATC 7 cut(s) 161, 460, 497, 508, 520, 958, 1105
BstMWI GCNNNNNNNGC 3 cut(s) 578, 581, 1097
BstNI CCWGG 1 cut(s) 902
BstSCI CCNGG 3 cut(s) 900, 1134, 1364
BstSFI CTRYAG 2 cut(s) 820, 867
BstSLI GKGCMC 1 cut(s) 994
BstUI CGCG 2 cut(s) 231, 988
BstV1I GCAGC 4 cut(s) 196, 226, 229, 559
BstV2I GAAGAC 2 cut(s) 401, 1333
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 542
BtrI CACGTC 2 cut(s) 296, 1049
BtsCI GGATG 6 cut(s) 196, 259, 418, 670, 1026, 1144
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 1 cut(s) 1071
Cac8I GCNNGC 6 cut(s) 233, 237, 916, 990, 1278, 1337
CaiI CAGNNNCTG 1 cut(s) 901
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 713
CsiI ACCWGGT 1 cut(s) 900
Csp6I GTAC 3 cut(s) 781, 1344, 1362
CspAI ACCGGT 1 cut(s) 323
CviAII CATG 5 cut(s) 68, 556, 605, 734, 887
CviQI GTAC 3 cut(s) 781, 1344, 1362
DdeI CTNAG 7 cut(s) 140, 274, 404, 427, 544, 681, 1293
DpnI GATC 7 cut(s) 163, 462, 499, 510, 522, 960, 1107
DpnII GATC 7 cut(s) 161, 460, 497, 508, 520, 958, 1105
Ecl136II GAGCTC 1 cut(s) 847
Eco130I CCWWGG 2 cut(s) 185, 962
Eco147I AGGCCT 1 cut(s) 542
Eco24I GRGCYC 2 cut(s) 849, 916
Eco32I GATATC 1 cut(s) 1264
Eco47I GGWCC 1 cut(s) 713
Eco53kI GAGCTC 1 cut(s) 847
Eco57I CTGAAG 2 cut(s) 108, 1332
Eco88I CYCGRG 3 cut(s) 776, 842, 1186
EcoICRI GAGCTC 1 cut(s) 847
EcoRII CCWGG 1 cut(s) 900
EcoRV GATATC 1 cut(s) 1264
EcoT14I CCWWGG 2 cut(s) 185, 962
EcoT38I GRGCYC 2 cut(s) 849, 916
ErhI CCWWGG 2 cut(s) 185, 962
FaeI CATG 5 cut(s) 71, 559, 608, 737, 890
FalI AAGNNNNNCTT 4 cut(s) 297, 329, 527, 559
FaqI GGGAC 1 cut(s) 807
FatI CATG 5 cut(s) 67, 555, 604, 733, 886
FblI GTMKAC 4 cut(s) 300, 364, 477, 819
Fnu4HI GCNGC 6 cut(s) 210, 240, 243, 573, 582, 1041
FokI GGATG 6 cut(s) 203, 246, 405, 677, 1013, 1151
FriOI GRGCYC 2 cut(s) 849, 916
Fsp4HI GCNGC 6 cut(s) 210, 240, 243, 573, 582, 1041
FspBI CTAG 2 cut(s) 350, 744
GluI GCNGC 6 cut(s) 210, 240, 243, 573, 582, 1041
HaeIII GGCC 1 cut(s) 542
HapII CCGG 5 cut(s) 324, 530, 623, 1135, 1365
Hin1II CATG 5 cut(s) 71, 559, 608, 737, 890
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 4 cut(s) 137, 683, 1002, 1098
HinfI GANTC 5 cut(s) 23, 46, 59, 117, 1226
HpaII CCGG 5 cut(s) 324, 530, 623, 1135, 1365
HphI GGTGA 2 cut(s) 503, 1221
Hpy166II GTNNAC 6 cut(s) 301, 365, 433, 478, 820, 992
Hpy188I TCNGA 7 cut(s) 75, 691, 713, 814, 1216, 1248, 1351
Hpy188III TCNNGA 5 cut(s) 114, 263, 776, 842, 1188
Hpy8I GTNNAC 6 cut(s) 301, 365, 433, 478, 820, 992
Hpy99I CGWCG 1 cut(s) 1175
HpyAV CCTTC 4 cut(s) 132, 275, 303, 1202
HpyCH4III ACNGT 4 cut(s) 97, 805, 824, 1361
HpyCH4IV ACGT 2 cut(s) 295, 1048
HpyCH4V TGCA 7 cut(s) 245, 992, 1026, 1076, 1091, 1151, 1286
HpyF10VI GCNNNNNNNGC 3 cut(s) 578, 581, 1097
HpyF3I CTNAG 7 cut(s) 140, 274, 404, 427, 544, 681, 1293
HpySE526I ACGT 2 cut(s) 295, 1048
Hsp92II CATG 5 cut(s) 71, 559, 608, 737, 890
Kzo9I GATC 7 cut(s) 161, 460, 497, 508, 520, 958, 1105
LmnI GCTCC 3 cut(s) 172, 778, 1273
Lsp1109I GCAGC 4 cut(s) 196, 226, 229, 559
LweI GCATC 3 cut(s) 870, 1025, 1035
MabI ACCWGGT 1 cut(s) 900
MaeI CTAG 2 cut(s) 350, 744
MaeII ACGT 2 cut(s) 295, 1048
MaeIII GTNAC 2 cut(s) 371, 1069
MalI GATC 7 cut(s) 163, 462, 499, 510, 522, 960, 1107
MboI GATC 7 cut(s) 161, 460, 497, 508, 520, 958, 1105
MboII GAAGA 8 cut(s) 88, 401, 404, 515, 518, 1140, 1235, 1338
MfeI CAATTG 1 cut(s) 797
MhlI GDGCHC 4 cut(s) 775, 849, 916, 994
MluCI AATT 5 cut(s) 204, 380, 596, 797, 1196
MluI ACGCGT 1 cut(s) 986
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 1007
MseI TTAA 4 cut(s) 342, 642, 968, 1157
MslI CAYNNNNRTG 2 cut(s) 560, 1021
MspI CCGG 5 cut(s) 324, 530, 623, 1135, 1365
MspR9I CCNGG 3 cut(s) 902, 1136, 1366
MunI CAATTG 1 cut(s) 797
MvaI CCWGG 1 cut(s) 902
MvnI CGCG 2 cut(s) 231, 988
MwoI GCNNNNNNNGC 3 cut(s) 578, 581, 1097
NciI CCSGG 2 cut(s) 1136, 1366
NdeII GATC 7 cut(s) 161, 460, 497, 508, 520, 958, 1105
NlaIII CATG 5 cut(s) 71, 559, 608, 737, 890
NmuCI GTSAC 1 cut(s) 1069
PaeR7I CTCGAG 1 cut(s) 842
PceI AGGCCT 1 cut(s) 542
PfeI GAWTC 4 cut(s) 23, 46, 59, 1226
PflMI CCANNNNNTGG 1 cut(s) 191
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 6 cut(s) 211, 241, 244, 574, 583, 1042
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 849
Psp6I CCWGG 1 cut(s) 900
PspGI CCWGG 1 cut(s) 900
PspPI GGNCC 1 cut(s) 713
PstNI CAGNNNCTG 1 cut(s) 901
RsaI GTAC 3 cut(s) 782, 1345, 1363
RsaNI GTAC 3 cut(s) 781, 1344, 1362
RseI CAYNNNNRTG 2 cut(s) 560, 1021
SacI GAGCTC 1 cut(s) 849
SaqAI TTAA 4 cut(s) 342, 642, 968, 1157
SatI GCNGC 6 cut(s) 210, 240, 243, 573, 582, 1041
Sau3AI GATC 7 cut(s) 161, 460, 497, 508, 520, 958, 1105
Sau96I GGNCC 1 cut(s) 713
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 3 cut(s) 902, 1136, 1366
SduI GDGCHC 4 cut(s) 775, 849, 916, 994
SexAI ACCWGGT 1 cut(s) 900
SfaNI GCATC 3 cut(s) 870, 1025, 1035
SfcI CTRYAG 2 cut(s) 820, 867
Sfr274I CTCGAG 1 cut(s) 842
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 842
SmiMI CAYNNNNRTG 2 cut(s) 560, 1021
SmlI CTYRAG 1 cut(s) 842
SmoI CTYRAG 1 cut(s) 842
Sse9I AATT 5 cut(s) 204, 380, 596, 797, 1196
SseBI AGGCCT 1 cut(s) 542
SsiI CCGC 5 cut(s) 229, 581, 976, 1040, 1280
SspI AATATT 1 cut(s) 655
SspMI CTAG 2 cut(s) 350, 744
SstI GAGCTC 1 cut(s) 849
StuI AGGCCT 1 cut(s) 542
StyD4I CCNGG 3 cut(s) 900, 1134, 1364
StyI CCWWGG 2 cut(s) 185, 962
TaaI ACNGT 4 cut(s) 97, 805, 824, 1361
TaiI ACGT 2 cut(s) 298, 1051
TaqI TCGA 3 cut(s) 26, 843, 1200
TasI AATT 5 cut(s) 204, 380, 596, 797, 1196
TauI GCSGC 2 cut(s) 584, 1043
TfiI GAWTC 4 cut(s) 23, 46, 59, 1226
Tru1I TTAA 4 cut(s) 342, 642, 968, 1157
Tru9I TTAA 4 cut(s) 342, 642, 968, 1157
TscAI CASTG 1 cut(s) 1078
TseFI GTSAC 1 cut(s) 1069
TseI GCWGC 4 cut(s) 209, 239, 242, 572
Tsp45I GTSAC 1 cut(s) 1069
TspDTI ATGAA 7 cut(s) 72, 248, 266, 404, 578, 934, 1155
TspRI CASTG 1 cut(s) 1078
Van91I CCANNNNNTGG 1 cut(s) 191
VneI GTGCAC 1 cut(s) 990
VpaK11BI GGWCC 1 cut(s) 713
XapI RAATTY 3 cut(s) 380, 596, 1196
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XhoI CTCGAG 1 cut(s) 842
XmiI GTMKAC 4 cut(s) 300, 364, 477, 819
XspI CTAG 2 cut(s) 350, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.