Rroxscaffold_5G00371210
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
52833137 .. 52837131
3995 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00371210.1

Sequence Viewer

Length: 1296 bp
ATGATCGGAAGCAGGGTCAACCGACGGTGTCTTCTAACATTACGAGATTGCCTTCCGACTAAGGTCAAGAAGCAATGGGGGTCAAGAAGGGTGGATGTAGGGTCCAAAATGCCTGATCCCAAGGATGTAGTACCTGGGGGTCAAATTGCTGCCCAAACTTTCACTTTTCGTGAGCTTGCCGCTGCAACAAAAAATTTTAGGCCAGAATCTTTCATAGGAGAAGGGATTGTTGCTGTTAAGCAATTGGATAGGAATGGACTTCAGGGTAATAGAGAGTTTCTAGTTGAGGTTCTCATGCTAAGTCTTCTACATCATACTAACCTTGTGAACCTGATTGGATACTGTGCGGATGGAGATCAAAGGCTTCTTGTTTATGAGTTTATGCCCTTAGGATCATTGGAAGATCACCTTCATGACGTTCCTCTGGATAAAGAAGTATTGGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAAAGGATTGGAATACCTACATGACAAGGCAAACCCTCCAGTTATTTACAGGGACTTCAAATCATCCAACATATTACTGGAAGAAGGATTTCACCCTAAGCTTTCAGATTTTGGGCTCGCAAAGCTTGGTCCTACTGGAGACAAGTCGCATGTTTCTACCAGGGTTATGGGTACTTATGGTTATTGTGCTCCAGAGTATGCAATGACTGGACAATTGACAGTGAAGTCGGATGTCTACAGTTTTGGGGTGGTGTTTCTGGAGCTGATTACTGGCCGTAAAGCCATTGATAGCACTAGACCCCATGGGGAACAGAACCTTGTCACTTGGGCACGTCCCTTGTTCAACGATCGCAGGAAGTTTTCAAAATTGGCAGATCCGAGGCTGCAGGGCCGGTATCCAATGAGGGGCCTCTACCAAGCTCTTGCTGTGGCATCCATGTGCATTCAGGAACAAGCCGCCACACGTCCTCTGATTGGGGATGTGGTTACTGCTCTATCTTATCTAGCCAACCAGGCATACGACCCTACTGCCGCATCAGGGCATGGCCATAGAAGTTCTGGGGAAAAGGATGAGAGACGAAGAGATGAGAGAGGTGGAAGGATATTGAGGAATGAGGAAGGAGGAGGATCTGGACGCAAATGGCCGGATTTAGATGGTGGGTCTGAGAAGGATGATTCCCCGAAGGAAACTGCAAGGATGTTAAACCGGGATTTGGATAGAGAACGAGCTGTTGCTGAGGCCAAGATGTGGGGTGAGAATTGGCGAGAGAAGAGACGACAGAGTGCACAGGGCAGTTTTGATGGTACTAATTTGTAG

Protein Analysis

431

Amino Acids

48.15

Weight (kDa)

9.01

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 76 - 257 9.6e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 76 - 259 6e-36 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 703
AccB7I CCANNNNNTGG 1 cut(s) 1227
AccI GTMKAC 1 cut(s) 714
AciI CCGC 4 cut(s) 180, 347, 936, 1011
AclWI GGATC 4 cut(s) 110, 400, 848, 1114
AcoI YGGCCR 3 cut(s) 751, 1024, 1121
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 3 cut(s) 132, 652, 1285
AfiI CCNNNNNNNGG 5 cut(s) 884, 953, 1017, 1192, 1227
AflIII ACRYGT 1 cut(s) 941
AgsI TTSAA 3 cut(s) 538, 823, 843
AjiI CACGTC 2 cut(s) 812, 944
AjnI CCWGG 3 cut(s) 133, 638, 990
AluBI AGCT 7 cut(s) 175, 467, 580, 604, 742, 899, 1208
AluI AGCT 7 cut(s) 175, 467, 580, 604, 742, 899, 1208
Alw21I GWGCWC 2 cut(s) 670, 1267
Alw26I GTCTC 3 cut(s) 612, 1048, 1246
Alw44I GTGCAC 1 cut(s) 1263
AlwI GGATC 4 cut(s) 110, 400, 848, 1114
AoxI GGCC 7 cut(s) 200, 751, 868, 886, 1024, 1121, 1218
ApaLI GTGCAC 1 cut(s) 1263
ApeKI GCWGC 5 cut(s) 149, 182, 467, 476, 862
ApoI RAATTY 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 567
AspS9I GGNCC 4 cut(s) 102, 608, 868, 886
AsuC2I CCSGG 1 cut(s) 1187
AsuHPI GGTGA 3 cut(s) 398, 563, 1244
AvaII GGWCC 2 cut(s) 102, 608
AxyI CCTNAGG 1 cut(s) 388
BaeGI GKGCMC 2 cut(s) 811, 1267
BalI TGGCCA 1 cut(s) 1026
BanII GRGCYC 1 cut(s) 597
BbsI GAAGAC 2 cut(s) 23, 296
Bbv12I GWGCWC 2 cut(s) 670, 1267
BbvCI CCTCAGC 1 cut(s) 1215
BbvI GCAGC 5 cut(s) 136, 169, 454, 488, 849
BccI CCATC 3 cut(s) 344, 1127, 1274
BceAI ACGGC 1 cut(s) 738
BcgI CGANNNNNNTGC 2 cut(s) 989, 1023
BciT130I CCWGG 3 cut(s) 135, 640, 992
BciVI GTATCC 2 cut(s) 332, 885
BcnI CCSGG 1 cut(s) 1187
BcoDI GTCTC 3 cut(s) 612, 1048, 1246
BfaI CTAG 3 cut(s) 281, 774, 983
BfmI CTRYAG 2 cut(s) 715, 863
BfuI GTATCC 2 cut(s) 332, 885
BglI GCCNNNNNGGC 1 cut(s) 992
BisI GCNGC 8 cut(s) 150, 180, 183, 468, 477, 863, 936, 1011
BlsI GCNGC 8 cut(s) 151, 181, 184, 469, 478, 864, 937, 1012
Bme1390I CCNGG 4 cut(s) 135, 640, 992, 1187
Bme18I GGWCC 2 cut(s) 102, 608
BmgBI CACGTC 2 cut(s) 812, 944
BmgT120I GGNCC 4 cut(s) 102, 608, 868, 886
BmiI GGNNCC 2 cut(s) 103, 887
BmrFI CCNGG 4 cut(s) 135, 640, 992, 1187
BmsI GCATC 2 cut(s) 920, 1022
BoxI GACNNNNGTC 1 cut(s) 62
BpiI GAAGAC 2 cut(s) 23, 296
BpmI CTGGAG 4 cut(s) 501, 636, 654, 758
Bpu10I CCTNAGC 2 cut(s) 576, 1215
BpuMI CCSGG 1 cut(s) 1187
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 5 cut(s) 120, 134, 639, 781, 857
Bsc4I CCNNNNNNNGG 5 cut(s) 884, 953, 1017, 1192, 1227
Bse118I RCCGGY 1 cut(s) 870
Bse1I ACTGG 5 cut(s) 518, 561, 619, 691, 754
Bse21I CCTNAGG 1 cut(s) 388
Bse3DI GCAATG 2 cut(s) 80, 687
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 3 cut(s) 135, 640, 992
BseDI CCNNGG 5 cut(s) 120, 134, 639, 781, 857
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 5 cut(s) 884, 953, 1017, 1192, 1227
BseMI GCAATG 2 cut(s) 80, 687
BseMII CTCAG 2 cut(s) 1134, 1206
BseNI ACTGG 5 cut(s) 518, 561, 619, 691, 754
BseRI GAGGAG 1 cut(s) 1116
BseSI GKGCMC 2 cut(s) 811, 1267
BseXI GCAGC 5 cut(s) 136, 169, 454, 488, 849
BsgI GTGCAG 1 cut(s) 495
Bsh1285I CGRYCG 1 cut(s) 829
BshFI GGCC 7 cut(s) 202, 753, 870, 888, 1026, 1123, 1220
BsiEI CGRYCG 1 cut(s) 829
BsiHKAI GWGCWC 2 cut(s) 670, 1267
BsiSI CCGG 3 cut(s) 871, 1124, 1186
BslFI GGGAC 2 cut(s) 545, 798
BslI CCNNNNNNNGG 5 cut(s) 884, 953, 1017, 1192, 1227
BsmAI GTCTC 3 cut(s) 612, 1048, 1246
BsmBI CGTCTC 2 cut(s) 1048, 1246
BsmFI GGGAC 2 cut(s) 545, 798
BsmI GAATGC 1 cut(s) 921
BsnI GGCC 7 cut(s) 202, 753, 870, 888, 1026, 1123, 1220
Bsp1286I GDGCHC 4 cut(s) 597, 670, 811, 1267
Bsp143I GATC 8 cut(s) 3, 115, 355, 392, 403, 826, 853, 1106
Bsp19I CCATGG 1 cut(s) 781
BspACI CCGC 4 cut(s) 180, 347, 936, 1011
BspANI GGCC 7 cut(s) 202, 753, 870, 888, 1026, 1123, 1220
BspCNI CTCAG 2 cut(s) 1135, 1207
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 103, 887
BspMAI CTGCAG 1 cut(s) 867
BspPI GGATC 4 cut(s) 110, 400, 848, 1114
BsrDI GCAATG 2 cut(s) 80, 687
BsrFI RCCGGY 1 cut(s) 870
BsrI ACTGG 5 cut(s) 518, 561, 619, 691, 754
BssAI RCCGGY 1 cut(s) 870
BssECI CCNNGG 5 cut(s) 120, 134, 639, 781, 857
BssMI GATC 8 cut(s) 3, 115, 355, 392, 403, 826, 853, 1106
BssT1I CCWWGG 2 cut(s) 120, 781
Bst2UI CCWGG 3 cut(s) 135, 640, 992
Bst4CI ACNGT 4 cut(s) 27, 344, 700, 719
Bst6I CTCTTC 2 cut(s) 1054, 1244
BstC8I GCNNGC 2 cut(s) 177, 597
BstDEI CTNAG 6 cut(s) 60, 299, 388, 576, 1143, 1215
BstDSI CCRYGG 1 cut(s) 781
BstKTI GATC 8 cut(s) 6, 118, 358, 395, 406, 829, 856, 1109
BstMAI GTCTC 3 cut(s) 612, 1048, 1246
BstMBI GATC 8 cut(s) 3, 115, 355, 392, 403, 826, 853, 1106
BstMCI CGRYCG 1 cut(s) 829
BstMWI GCNNNNNNNGC 4 cut(s) 473, 476, 601, 992
BstNI CCWGG 3 cut(s) 135, 640, 992
BstNSI RCATGY 1 cut(s) 632
BstPAI GACNNNNGTC 1 cut(s) 62
BstSCI CCNGG 4 cut(s) 133, 638, 990, 1185
BstSFI CTRYAG 2 cut(s) 715, 863
BstSLI GKGCMC 2 cut(s) 811, 1267
BstV1I GCAGC 5 cut(s) 136, 169, 454, 488, 849
BstV2I GAAGAC 2 cut(s) 23, 296
BstX2I RGATCY 2 cut(s) 853, 1106
BstXI CCANNNNNNTGG 2 cut(s) 487, 646
BstYI RGATCY 2 cut(s) 853, 1106
Bsu36I CCTNAGG 1 cut(s) 388
BsuI GTATCC 2 cut(s) 332, 885
BsuRI GGCC 7 cut(s) 202, 753, 870, 888, 1026, 1123, 1220
BtgI CCRYGG 1 cut(s) 781
BtrI CACGTC 2 cut(s) 812, 944
BtsIMutI CAGTG 1 cut(s) 705
Cac8I GCNNGC 2 cut(s) 177, 597
CciI TCATGA 1 cut(s) 412
Cfr10I RCCGGY 1 cut(s) 870
Cfr13I GGNCC 4 cut(s) 102, 608, 868, 886
CseI GACGC 1 cut(s) 1122
Csp6I GTAC 3 cut(s) 131, 651, 1284
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 7 cut(s) 295, 413, 500, 629, 782, 916, 1022
CviQI GTAC 3 cut(s) 131, 651, 1284
DdeI CTNAG 6 cut(s) 60, 299, 388, 576, 1143, 1215
DpnI GATC 8 cut(s) 5, 117, 357, 394, 405, 828, 855, 1108
DpnII GATC 8 cut(s) 3, 115, 355, 392, 403, 826, 853, 1106
DrdI GACNNNNNNGTC 1 cut(s) 703
DseDI GACNNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 3 cut(s) 751, 1024, 1121
Eam1104I CTCTTC 2 cut(s) 1054, 1244
EarI CTCTTC 2 cut(s) 1054, 1244
Eco130I CCWWGG 2 cut(s) 120, 781
Eco24I GRGCYC 1 cut(s) 597
Eco47I GGWCC 2 cut(s) 102, 608
Eco57I CTGAAG 1 cut(s) 245
Eco81I CCTNAGG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 886
EcoRII CCWGG 3 cut(s) 133, 638, 990
EcoT14I CCWWGG 2 cut(s) 120, 781
EcoT38I GRGCYC 1 cut(s) 597
ErhI CCWWGG 2 cut(s) 120, 781
Esp3I CGTCTC 2 cut(s) 1048, 1246
FaeI CATG 7 cut(s) 298, 416, 503, 632, 785, 919, 1025
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 2 cut(s) 545, 798
FatI CATG 7 cut(s) 294, 412, 499, 628, 781, 915, 1021
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 8 cut(s) 150, 180, 183, 468, 477, 863, 936, 1011
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 8 cut(s) 150, 180, 183, 468, 477, 863, 936, 1011
FspBI CTAG 3 cut(s) 281, 774, 983
GluI GCNGC 8 cut(s) 150, 180, 183, 468, 477, 863, 936, 1011
GsuI CTGGAG 4 cut(s) 501, 636, 654, 758
HaeIII GGCC 7 cut(s) 202, 753, 870, 888, 1026, 1123, 1220
HapII CCGG 3 cut(s) 871, 1124, 1186
HgaI GACGC 1 cut(s) 1122
Hin1II CATG 7 cut(s) 298, 416, 503, 632, 785, 919, 1025
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 2 cut(s) 578, 602
HinfI GANTC 2 cut(s) 206, 1154
HpaII CCGG 3 cut(s) 871, 1124, 1186
HphI GGTGA 3 cut(s) 398, 563, 1244
Hpy166II GTNNAC 4 cut(s) 19, 328, 715, 1265
Hpy188I TCNGA 7 cut(s) 8, 57, 586, 709, 858, 951, 1144
Hpy188III TCNNGA 9 cut(s) 67, 84, 170, 413, 425, 671, 737, 926, 1110
Hpy8I GTNNAC 4 cut(s) 19, 328, 715, 1265
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 9 cut(s) 62, 81, 215, 419, 557, 1071, 1091, 1141, 1156
HpyCH4III ACNGT 4 cut(s) 27, 344, 700, 719
HpyCH4IV ACGT 3 cut(s) 417, 811, 943
HpyCH4V TGCA 7 cut(s) 185, 476, 680, 865, 921, 1172, 1265
HpyF10VI GCNNNNNNNGC 4 cut(s) 473, 476, 601, 992
HpyF3I CTNAG 6 cut(s) 60, 299, 388, 576, 1143, 1215
HpySE526I ACGT 3 cut(s) 417, 811, 943
Hsp92II CATG 7 cut(s) 298, 416, 503, 632, 785, 919, 1025
Kzo9I GATC 8 cut(s) 3, 115, 355, 392, 403, 826, 853, 1106
LmnI GCTCC 2 cut(s) 673, 739
Lsp1109I GCAGC 5 cut(s) 136, 169, 454, 488, 849
LweI GCATC 2 cut(s) 920, 1022
MaeI CTAG 3 cut(s) 281, 774, 983
MaeII ACGT 3 cut(s) 417, 811, 943
MaeIII GTNAC 2 cut(s) 799, 964
MalI GATC 8 cut(s) 5, 117, 357, 394, 405, 828, 855, 1108
MboI GATC 8 cut(s) 3, 115, 355, 392, 403, 826, 853, 1106
MboII GAAGA 6 cut(s) 23, 296, 413, 572, 1071, 1261
MfeI CAATTG 2 cut(s) 242, 692
MflI RGATCY 2 cut(s) 853, 1106
MhlI GDGCHC 4 cut(s) 597, 670, 811, 1267
MlsI TGGCCA 1 cut(s) 1026
MluCI AATT 7 cut(s) 144, 193, 242, 692, 845, 1237, 1288
MluNI TGGCCA 1 cut(s) 1026
MmeI TCCRAC 3 cut(s) 80, 570, 687
Mox20I TGGCCA 1 cut(s) 1026
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 1026
MseI TTAA 2 cut(s) 237, 1181
MslI CAYNNNNRTG 3 cut(s) 411, 455, 916
Msp20I TGGCCA 1 cut(s) 1026
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 3 cut(s) 871, 1124, 1186
MspR9I CCNGG 4 cut(s) 135, 640, 992, 1187
MunI CAATTG 2 cut(s) 242, 692
Mva1269I GAATGC 1 cut(s) 921
MvaI CCWGG 3 cut(s) 135, 640, 992
MwoI GCNNNNNNNGC 4 cut(s) 473, 476, 601, 992
NciI CCSGG 1 cut(s) 1187
NcoI CCATGG 1 cut(s) 781
NdeII GATC 8 cut(s) 3, 115, 355, 392, 403, 826, 853, 1106
NlaIII CATG 7 cut(s) 298, 416, 503, 632, 785, 919, 1025
NlaIV GGNNCC 2 cut(s) 103, 887
NmuCI GTSAC 1 cut(s) 799
NspI RCATGY 1 cut(s) 632
PagI TCATGA 1 cut(s) 412
PctI GAATGC 1 cut(s) 921
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 206, 1154
PflFI GACNNNGTC 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 1227
PkrI GCNGC 8 cut(s) 151, 181, 184, 469, 478, 864, 937, 1012
Ple19I CGATCG 1 cut(s) 829
PshAI GACNNNNGTC 1 cut(s) 62
Psp6I CCWGG 3 cut(s) 133, 638, 990
PspGI CCWGG 3 cut(s) 133, 638, 990
PspN4I GGNNCC 2 cut(s) 103, 887
PspPI GGNCC 4 cut(s) 102, 608, 868, 886
PstI CTGCAG 1 cut(s) 867
PsuI RGATCY 2 cut(s) 853, 1106
PsyI GACNNNGTC 1 cut(s) 27
PvuI CGATCG 1 cut(s) 829
RsaI GTAC 3 cut(s) 132, 652, 1285
RsaNI GTAC 3 cut(s) 131, 651, 1284
RseI CAYNNNNRTG 3 cut(s) 411, 455, 916
SaqAI TTAA 2 cut(s) 237, 1181
SatI GCNGC 8 cut(s) 150, 180, 183, 468, 477, 863, 936, 1011
Sau3AI GATC 8 cut(s) 3, 115, 355, 392, 403, 826, 853, 1106
Sau96I GGNCC 4 cut(s) 102, 608, 868, 886
ScrFI CCNGG 4 cut(s) 135, 640, 992, 1187
SduI GDGCHC 4 cut(s) 597, 670, 811, 1267
SfaNI GCATC 2 cut(s) 920, 1022
SfcI CTRYAG 2 cut(s) 715, 863
SinI GGWCC 2 cut(s) 102, 608
SmiMI CAYNNNNRTG 3 cut(s) 411, 455, 916
Sse9I AATT 7 cut(s) 144, 193, 242, 692, 845, 1237, 1288
SsiI CCGC 4 cut(s) 180, 347, 936, 1011
SspMI CTAG 3 cut(s) 281, 774, 983
StyD4I CCNGG 4 cut(s) 133, 638, 990, 1185
StyI CCWWGG 2 cut(s) 120, 781
TaaI ACNGT 4 cut(s) 27, 344, 700, 719
TaiI ACGT 3 cut(s) 420, 814, 946
TasI AATT 7 cut(s) 144, 193, 242, 692, 845, 1237, 1288
TauI GCSGC 3 cut(s) 182, 938, 1013
TfiI GAWTC 2 cut(s) 206, 1154
Tru1I TTAA 2 cut(s) 237, 1181
Tru9I TTAA 2 cut(s) 237, 1181
TscAI CASTG 1 cut(s) 705
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 5 cut(s) 149, 182, 467, 476, 862
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 3 cut(s) 202, 401, 473
TspRI CASTG 1 cut(s) 705
Tth111I GACNNNGTC 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 1227
VneI GTGCAC 1 cut(s) 1263
VpaK11BI GGWCC 2 cut(s) 102, 608
XapI RAATTY 1 cut(s) 193
XceI RCATGY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 2 cut(s) 553, 1034
XmiI GTMKAC 1 cut(s) 714
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 3 cut(s) 281, 774, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.