Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008924

Physical Location & Seq

Genomic Coordinates Reverse (-)

40336383 .. 40336700

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0236800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGACTGTGAGCAACAGTACCGGCAAAGAACGCCTTGTGGTGGAGGTTGTGGCGGCCCACAACCTCATGCCCAAAGACGGTGAAGGCTCATCGTCCCCATTCGTCGAAATCGAATTTGAAAATCAGAGGCTCCGAACCCAGGTCAAGTACAAGGACCTGAACCCGGTCTGGAACGAGAAACTAGTCTTTCGTATCAAGGACGTGGCTGATCTTCCCTACAGAGCCATAGAGGTCCACATTTTCAACGAGAGGAGGTCCGGCAATAGCAGAAATTTTCTAGGTAAAGTCAGAGTTTCAGGGTCCAATATGTTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

105

Amino Acids

11.96

Weight (kDa)

9.45

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	11 - 102	1.2e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13160
fragaria_vesca	FvH4_4g23170 FvH4_4g23170 FvH4_4g23170 FvH4_4g23170 FvH4_4g23170
malus_domestica	MD13G1124200.v1.1 MD16G1124800.v1.1
prunus_persica	Prupe.1G220800_v2.0.a1 Prupe.1G220800_v2.0.a1
pyrus_communis	pycom13g10860 pycom16g10660
rosa_chinensis	RchiOBHm_Chr4g0429521
rosa_laevigata	RLG00000007064
rosa_multiflora	Rmu_sc0003708.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371210
rosa_rugosa	Rorug04G0236700 Rorug04G0236800
rosa_samantha	Rh4BG298100 Rh4CG313700 Rh4DG295200
rosa_wichuraiana	Rw4G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	113, 271
AfaI	GTAC	2 cut(s)	19, 149
AfiI	CCNNNNNNNGG	4 cut(s)	40, 77, 139, 163
AgsI	TTSAA	2 cut(s)	119, 244
AhlI	ACTAGT	1 cut(s)	181
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	138
AoxI	GGCC	1 cut(s)	54
ApoI	RAATTY	2 cut(s)	113, 271
AspS9I	GGNCC	5 cut(s)	55, 154, 232, 255, 300
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	4 cut(s)	154, 232, 255, 300
BciT130I	CCWGG	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	164
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	2 cut(s)	182, 278
BfmI	CTRYAG	1 cut(s)	217
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	140, 164
Bme18I	GGWCC	4 cut(s)	154, 232, 255, 300
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	5 cut(s)	55, 154, 232, 255, 300
BmiI	GGNNCC	2 cut(s)	131, 301
BmrFI	CCNGG	2 cut(s)	140, 164
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 77, 139, 163
Bse118I	RCCGGY	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	4 cut(s)	40, 77, 139, 163
BseRI	GAGGAG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	21, 164, 258
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	4 cut(s)	40, 77, 139, 163
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	2 cut(s)	131, 301
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	3 cut(s)	7, 17, 80
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	138, 162
BstSFI	CTRYAG	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	5 cut(s)	55, 154, 232, 255, 300
Csp6I	GTAC	2 cut(s)	18, 148
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	5 cut(s)	56, 87, 130, 206, 224
CviKI_1	RGCY	5 cut(s)	56, 87, 130, 206, 224
CviQI	GTAC	2 cut(s)	18, 148
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eco47I	GGWCC	4 cut(s)	154, 232, 255, 300
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	70
FaiI	YATR	3 cut(s)	68, 227, 308
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	182, 278
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	3 cut(s)	21, 164, 258
Hin1II	CATG	1 cut(s)	70
HpaII	CCGG	3 cut(s)	21, 164, 258
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	126, 134, 290
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	3 cut(s)	7, 17, 80
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	8 cut(s)	34, 125, 152, 154, 170, 177, 271, 282
MaeI	CTAG	2 cut(s)	182, 278
MaeII	ACGT	1 cut(s)	201
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	203
MluCI	AATT	2 cut(s)	113, 271
MnlI	CCTC	6 cut(s)	37, 74, 120, 223, 243, 246
MspI	CCGG	3 cut(s)	21, 164, 258
MspR9I	CCNGG	2 cut(s)	140, 164
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	2 cut(s)	131, 301
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	131, 301
PspPI	GGNCC	5 cut(s)	55, 154, 232, 255, 300
PspPPI	RGGWCCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	19, 149
RsaNI	GTAC	2 cut(s)	18, 148
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	5 cut(s)	55, 154, 232, 255, 300
ScrFI	CCNGG	2 cut(s)	140, 164
SetI	ASST	8 cut(s)	48, 66, 144, 159, 204, 234, 257, 283
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	4 cut(s)	154, 232, 255, 300
SpeI	ACTAGT	1 cut(s)	181
Sse9I	AATT	2 cut(s)	113, 271
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	182, 278
StyD4I	CCNGG	2 cut(s)	138, 162
TaaI	ACNGT	3 cut(s)	7, 17, 80
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	105, 111
TasI	AATT	2 cut(s)	113, 271
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	56
VpaK11BI	GGWCC	4 cut(s)	154, 232, 255, 300
XapI	RAATTY	2 cut(s)	113, 271
XspI	CTAG	2 cut(s)	182, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.