Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008924

Physical Location & Seq

Genomic Coordinates Reverse (-)

51685661 .. 51690030

Gene Structure 4370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG295200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAAAATAGCTGCTGGTGCAGCCAAAGGATTGGAATACCTACATGACAAGGCTAACCCGCCAGTTATTTACAGGGACTTCAAATCATCCAACATATTACTGGAAGAAGGATTTCACCCTAAGCTTTCAGATTTTGGGCTCGCAAAGCTTGGTCCTACCGGAGACAAGTCACATGTTTCTACCAGGGTTATGGGTACTTATGGTTATTGTGCTCCAGAGTATGCAATGACTGGACAATTGACAGTGAAGTCGGATGTCTACAGTTTTGGGGTGGTGTTTCTGGAGCTGATTACTGGCCGTAAAGCCATTGATAGCACTAGACCCCATGGGGAACAGAACCTCGTCACTTGGGCACGTCCCTTGTTCAACGATCGCAGGAAGTTTTCAAAATTGGCAGATCCGAGGCTGCAGGGCCGGTATCCAATGAGGGGCCTCTACCAAGCTCTTGCTGTGGCATCCATGTGTATTCAGGAACAAGCCGCCACACGTCCTCTGATTGGGGATGTGGTTACTGCTCTATCTTATCTAGCCAACCAGGCATACGACCCTACCGCTGCATCAGGGCATGGCCATAGAAGTTCTGGAGAAAAGGATGAGAGACGAAGAGATGAGAGAGGTGGAAGGATATTGAGGAATGAGGAAGGAGGAGGATCTGGACGCAAATGGCCGGATTTAGATGGTGGGTCTGAGAAGGATGATTCCCCAAAGGAAACTGCAAGGATGTTAAACCGGGATTTGGATAGGGAACGAGCTGTTGCTGAGGCCAAGATGTGGGGTGAGAATTGGCGAGAGAAGAGACGACAGAGTGCACAGGGCAGTTTTGATGGTACTAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

279

Amino Acids

30.99

Weight (kDa)

9.21

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 105	3e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 108	3.2e-23	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008924)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13160
fragaria_vesca	FvH4_4g23170 FvH4_4g23170 FvH4_4g23170 FvH4_4g23170 FvH4_4g23170
malus_domestica	MD13G1124200.v1.1 MD16G1124800.v1.1
prunus_persica	Prupe.1G220800_v2.0.a1 Prupe.1G220800_v2.0.a1
pyrus_communis	pycom13g10860 pycom16g10660
rosa_chinensis	RchiOBHm_Chr4g0429521
rosa_laevigata	RLG00000007064
rosa_multiflora	Rmu_sc0003708.1_g000004
rosa_roxburghii	Rroxscaffold_5G00371210
rosa_rugosa	Rorug04G0236700 Rorug04G0236800
rosa_samantha	Rh4BG298100 Rh4CG313700 Rh4DG295200
rosa_wichuraiana	Rw4G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccB7I	CCANNNNNTGG	1 cut(s)	771
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	3 cut(s)	59, 480, 552
AclWI	GGATC	2 cut(s)	392, 658
AcoI	YGGCCR	3 cut(s)	295, 568, 665
AfaI	GTAC	2 cut(s)	196, 829
AfiI	CCNNNNNNNGG	4 cut(s)	428, 497, 736, 771
AflIII	ACRYGT	2 cut(s)	172, 485
AgsI	TTSAA	3 cut(s)	82, 367, 387
AjiI	CACGTC	2 cut(s)	356, 488
AjnI	CCWGG	2 cut(s)	182, 534
AluBI	AGCT	6 cut(s)	11, 124, 148, 286, 443, 752
AluI	AGCT	6 cut(s)	11, 124, 148, 286, 443, 752
Alw21I	GWGCWC	2 cut(s)	214, 811
Alw26I	GTCTC	3 cut(s)	156, 592, 790
Alw44I	GTGCAC	1 cut(s)	807
AlwI	GGATC	2 cut(s)	392, 658
AoxI	GGCC	6 cut(s)	295, 412, 430, 568, 665, 762
ApaLI	GTGCAC	1 cut(s)	807
ApeKI	GCWGC	4 cut(s)	11, 20, 406, 554
Asp700I	GAANNNNTTC	1 cut(s)	111
AspS9I	GGNCC	3 cut(s)	152, 412, 430
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	2 cut(s)	107, 788
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	2 cut(s)	355, 811
BalI	TGGCCA	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	2 cut(s)	214, 811
BbvCI	CCTCAGC	1 cut(s)	759
BbvI	GCAGC	3 cut(s)	32, 393, 541
BccI	CCATC	2 cut(s)	671, 818
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	2 cut(s)	184, 536
BciVI	GTATCC	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	3 cut(s)	156, 592, 790
BfaI	CTAG	2 cut(s)	318, 527
BfmI	CTRYAG	2 cut(s)	259, 407
BfuI	GTATCC	1 cut(s)	429
BglI	GCCNNNNNGGC	1 cut(s)	536
BisI	GCNGC	5 cut(s)	12, 21, 407, 480, 555
BlsI	GCNGC	5 cut(s)	13, 22, 408, 481, 556
Bme1390I	CCNGG	3 cut(s)	184, 536, 731
Bme18I	GGWCC	1 cut(s)	152
BmgBI	CACGTC	2 cut(s)	356, 488
BmgT120I	GGNCC	3 cut(s)	152, 412, 430
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	3 cut(s)	184, 536, 731
BmsI	GCATC	2 cut(s)	464, 566
BpmI	CTGGAG	3 cut(s)	198, 302, 603
Bpu10I	CCTNAGC	2 cut(s)	120, 759
BpuMI	CCSGG	1 cut(s)	731
BsaJI	CCNNGG	3 cut(s)	183, 325, 401
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	4 cut(s)	428, 497, 736, 771
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	4 cut(s)	62, 105, 235, 298
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	184, 536
BseDI	CCNNGG	3 cut(s)	183, 325, 401
BseGI	GGATG	7 cut(s)	86, 259, 455, 508, 598, 700, 726
BseLI	CCNNNNNNNGG	4 cut(s)	428, 497, 736, 771
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	678, 750
BseNI	ACTGG	4 cut(s)	62, 105, 235, 298
BseRI	GAGGAG	1 cut(s)	660
BseSI	GKGCMC	2 cut(s)	355, 811
BseXI	GCAGC	3 cut(s)	32, 393, 541
BsgI	GTGCAG	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	6 cut(s)	297, 414, 432, 570, 667, 764
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	2 cut(s)	214, 811
BsiSI	CCGG	4 cut(s)	159, 415, 668, 730
BslFI	GGGAC	2 cut(s)	89, 342
BslI	CCNNNNNNNGG	4 cut(s)	428, 497, 736, 771
BsmAI	GTCTC	3 cut(s)	156, 592, 790
BsmBI	CGTCTC	2 cut(s)	592, 790
BsmFI	GGGAC	2 cut(s)	89, 342
BsnI	GGCC	6 cut(s)	297, 414, 432, 570, 667, 764
Bsp1286I	GDGCHC	4 cut(s)	141, 214, 355, 811
Bsp143I	GATC	3 cut(s)	370, 397, 650
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	3 cut(s)	59, 480, 552
BspANI	GGCC	6 cut(s)	297, 414, 432, 570, 667, 764
BspCNI	CTCAG	2 cut(s)	679, 751
BspLI	GGNNCC	1 cut(s)	431
BspMAI	CTGCAG	1 cut(s)	411
BspPI	GGATC	2 cut(s)	392, 658
BsrDI	GCAATG	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	4 cut(s)	62, 105, 235, 298
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	3 cut(s)	183, 325, 401
BssMI	GATC	3 cut(s)	370, 397, 650
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	184, 536
Bst4CI	ACNGT	2 cut(s)	244, 263
Bst6I	CTCTTC	2 cut(s)	598, 788
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	120, 687, 759
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	7 cut(s)	86, 259, 455, 508, 598, 700, 726
BstKTI	GATC	3 cut(s)	373, 400, 653
BstMAI	GTCTC	3 cut(s)	156, 592, 790
BstMBI	GATC	3 cut(s)	370, 397, 650
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 20, 145, 536
BstNI	CCWGG	2 cut(s)	184, 536
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	3 cut(s)	182, 534, 729
BstSFI	CTRYAG	2 cut(s)	259, 407
BstSLI	GKGCMC	2 cut(s)	355, 811
BstV1I	GCAGC	3 cut(s)	32, 393, 541
BstX2I	RGATCY	2 cut(s)	397, 650
BstXI	CCANNNNNNTGG	2 cut(s)	31, 190
BstYI	RGATCY	2 cut(s)	397, 650
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	6 cut(s)	297, 414, 432, 570, 667, 764
BtgI	CCRYGG	1 cut(s)	325
BtrI	CACGTC	2 cut(s)	356, 488
BtsCI	GGATG	7 cut(s)	86, 259, 455, 508, 598, 700, 726
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	3 cut(s)	152, 412, 430
CseI	GACGC	1 cut(s)	666
Csp6I	GTAC	2 cut(s)	195, 828
CviAII	CATG	5 cut(s)	44, 173, 326, 460, 566
CviQI	GTAC	2 cut(s)	195, 828
DdeI	CTNAG	3 cut(s)	120, 687, 759
DpnI	GATC	3 cut(s)	372, 399, 652
DpnII	GATC	3 cut(s)	370, 397, 650
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	3 cut(s)	295, 568, 665
Eam1104I	CTCTTC	2 cut(s)	598, 788
EarI	CTCTTC	2 cut(s)	598, 788
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	182, 534
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	325
Esp3I	CGTCTC	2 cut(s)	592, 790
FaeI	CATG	5 cut(s)	47, 176, 329, 463, 569
FaqI	GGGAC	2 cut(s)	89, 342
FatI	CATG	5 cut(s)	43, 172, 325, 459, 565
FauI	CCCGC	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	5 cut(s)	12, 21, 407, 480, 555
FokI	GGATG	7 cut(s)	73, 266, 442, 515, 605, 707, 733
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	5 cut(s)	12, 21, 407, 480, 555
FspBI	CTAG	2 cut(s)	318, 527
GluI	GCNGC	5 cut(s)	12, 21, 407, 480, 555
GsuI	CTGGAG	3 cut(s)	198, 302, 603
HaeIII	GGCC	6 cut(s)	297, 414, 432, 570, 667, 764
HapII	CCGG	4 cut(s)	159, 415, 668, 730
HgaI	GACGC	1 cut(s)	666
Hin1II	CATG	5 cut(s)	47, 176, 329, 463, 569
HindIII	AAGCTT	2 cut(s)	122, 146
HinfI	GANTC	1 cut(s)	698
HpaII	CCGG	4 cut(s)	159, 415, 668, 730
HphI	GGTGA	2 cut(s)	107, 788
Hpy166II	GTNNAC	2 cut(s)	259, 809
Hpy188I	TCNGA	5 cut(s)	130, 253, 402, 495, 688
Hpy188III	TCNNGA	5 cut(s)	215, 281, 470, 582, 654
Hpy8I	GTNNAC	2 cut(s)	259, 809
HpyAV	CCTTC	4 cut(s)	101, 615, 635, 685
HpyCH4III	ACNGT	2 cut(s)	244, 263
HpyCH4IV	ACGT	2 cut(s)	355, 487
HpyCH4V	TGCA	6 cut(s)	20, 224, 409, 557, 716, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 20, 145, 536
HpyF3I	CTNAG	3 cut(s)	120, 687, 759
HpySE526I	ACGT	2 cut(s)	355, 487
Hsp92II	CATG	5 cut(s)	47, 176, 329, 463, 569
Kzo9I	GATC	3 cut(s)	370, 397, 650
LmnI	GCTCC	2 cut(s)	217, 283
Lsp1109I	GCAGC	3 cut(s)	32, 393, 541
LweI	GCATC	2 cut(s)	464, 566
MaeI	CTAG	2 cut(s)	318, 527
MaeII	ACGT	2 cut(s)	355, 487
MaeIII	GTNAC	3 cut(s)	168, 343, 508
MalI	GATC	3 cut(s)	372, 399, 652
MboI	GATC	3 cut(s)	370, 397, 650
MboII	GAAGA	3 cut(s)	116, 615, 805
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	2 cut(s)	397, 650
MhlI	GDGCHC	4 cut(s)	141, 214, 355, 811
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	4 cut(s)	236, 389, 781, 832
MluNI	TGGCCA	1 cut(s)	570
MmeI	TCCRAC	2 cut(s)	114, 231
Mox20I	TGGCCA	1 cut(s)	570
MroXI	GAANNNNTTC	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	1 cut(s)	725
MslI	CAYNNNNRTG	1 cut(s)	460
Msp20I	TGGCCA	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	4 cut(s)	159, 415, 668, 730
MspR9I	CCNGG	3 cut(s)	184, 536, 731
MunI	CAATTG	1 cut(s)	236
MvaI	CCWGG	2 cut(s)	184, 536
MwoI	GCNNNNNNNGC	4 cut(s)	17, 20, 145, 536
NciI	CCSGG	1 cut(s)	731
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	3 cut(s)	370, 397, 650
NlaIII	CATG	5 cut(s)	47, 176, 329, 463, 569
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	2 cut(s)	168, 343
NspI	RCATGY	1 cut(s)	176
PciI	ACATGT	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	698
PflMI	CCANNNNNTGG	1 cut(s)	771
PkrI	GCNGC	5 cut(s)	13, 22, 408, 481, 556
Ple19I	CGATCG	1 cut(s)	373
PscI	ACATGT	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	182, 534
PspGI	CCWGG	2 cut(s)	182, 534
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	3 cut(s)	152, 412, 430
PstI	CTGCAG	1 cut(s)	411
PsuI	RGATCY	2 cut(s)	397, 650
PvuI	CGATCG	1 cut(s)	373
RsaI	GTAC	2 cut(s)	196, 829
RsaNI	GTAC	2 cut(s)	195, 828
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	725
SatI	GCNGC	5 cut(s)	12, 21, 407, 480, 555
Sau3AI	GATC	3 cut(s)	370, 397, 650
Sau96I	GGNCC	3 cut(s)	152, 412, 430
ScrFI	CCNGG	3 cut(s)	184, 536, 731
SduI	GDGCHC	4 cut(s)	141, 214, 355, 811
SfaNI	GCATC	2 cut(s)	464, 566
SfcI	CTRYAG	2 cut(s)	259, 407
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	460
Sse9I	AATT	4 cut(s)	236, 389, 781, 832
SsiI	CCGC	3 cut(s)	59, 480, 552
SspMI	CTAG	2 cut(s)	318, 527
StyD4I	CCNGG	3 cut(s)	182, 534, 729
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	244, 263
TaiI	ACGT	2 cut(s)	358, 490
TasI	AATT	4 cut(s)	236, 389, 781, 832
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	1 cut(s)	725
Tru9I	TTAA	1 cut(s)	725
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	168, 343
TseI	GCWGC	4 cut(s)	11, 20, 406, 554
Tsp45I	GTSAC	2 cut(s)	168, 343
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	249
Van91I	CCANNNNNTGG	1 cut(s)	771
VneI	GTGCAC	1 cut(s)	807
VpaK11BI	GGWCC	1 cut(s)	152
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	2 cut(s)	97, 578
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	2 cut(s)	318, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.