AT5G14710

Proteasome assembly chaperone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015318
Physical Location & Seq
Forward (+)
4746264 .. 4747934
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14710.1

Sequence Viewer

Length: 375 bp
ATGGAAAGCTTGGACACTAATTTTCCTGTGCGCCATAGAAAGGTCTCGTTTGAAAGTAAGGGAAACAAGACAGAGATTGTGATCTGCAGCTATGAAGATCATATCCTTATCATAGCAACACAGATTGGTGCCATGGGAACTATATTGCACGCAAGGAAGGAAGAAGGGATGTCTGTTGAACCAACATTTAGTGTTTCAGTGATATTCGGAAAGCGAGACGAGCCAATGCTGACAGCAACTGCTCGAAGACTCATTGAACACATAAGTTCTATTGTTCCCTCGAAGCCTCTGGTTCTCTCACTTGGTCTCAAAGATCATTCTTCGGAGACGTTGAAGGAAATAGTAGCGACAGTGATTGAGAATCGCCTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC3

Protein Analysis

124

Amino Acids

13.87

Weight (kDa)

6.51

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC3 PF10178 37 - 121 3.6e-30 Proteasome assembly chaperone 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14710
fragaria_vesca FvH4_6g50830
malus_domestica MD17G1033600.v1.1
prunus_persica Prupe.3G286100_v2.0.a1
pyrus_communis pycom17g03070
rosa_chinensis RchiOBHm_Chr2g0172221
rosa_laevigata RLG00000022094
rosa_multiflora Rmu_sc0024549.1_g000003 Rmu_sc0025855.1_g000005
rosa_roxburghii Rroxscaffold_2G00080070
rosa_rugosa Rorug02G0557600
rosa_samantha Rh2AG632800 Rh2BG646400 Rh2CG613100 Rh2DG661000
rosa_wichuraiana Rw2G052390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 4 cut(s) 53, 179, 257, 334
AluBI AGCT 2 cut(s) 9, 90
AluI AGCT 2 cut(s) 9, 90
Alw26I GTCTC 4 cut(s) 49, 210, 311, 320
AlwNI CAGNNNCTG 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 33
BanI GGYRCC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 99
BcoDI GTCTC 4 cut(s) 49, 210, 311, 320
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 80
BsaI GGTCTC 2 cut(s) 49, 311
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 4 cut(s) 49, 210, 311, 320
BsmBI CGTCTC 2 cut(s) 210, 320
Bso31I GGTCTC 2 cut(s) 49, 311
Bsp143I GATC 3 cut(s) 81, 97, 313
Bsp19I CCATGG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 2 cut(s) 49, 311
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 81, 97, 313
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 3 cut(s) 84, 100, 316
BstMAI GTCTC 4 cut(s) 49, 210, 311, 320
BstMBI GATC 3 cut(s) 81, 97, 313
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 204, 357
Cac8I GCNNGC 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 1 cut(s) 33
CviAII CATG 1 cut(s) 133
CviJI RGCY 4 cut(s) 9, 90, 223, 286
CviKI_1 RGCY 4 cut(s) 9, 90, 223, 286
DpnI GATC 3 cut(s) 83, 99, 315
DpnII GATC 3 cut(s) 81, 97, 313
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 2 cut(s) 49, 311
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 2 cut(s) 210, 320
FaeI CATG 1 cut(s) 136
FaiI YATR 7 cut(s) 36, 93, 102, 113, 134, 143, 263
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 88
GlaI GCGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 33
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 2 cut(s) 249, 361
Hpy188I TCNGA 2 cut(s) 209, 325
HpyAV CCTTC 3 cut(s) 151, 158, 328
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 2 cut(s) 87, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpySE526I ACGT 1 cut(s) 329
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 81, 97, 313
LpnPI CCDG 2 cut(s) 39, 275
Lsp1109I GCAGC 1 cut(s) 99
MaeII ACGT 1 cut(s) 329
MalI GATC 3 cut(s) 83, 99, 315
MboI GATC 3 cut(s) 81, 97, 313
MboII GAAGA 4 cut(s) 107, 173, 258, 312
MluCI AATT 1 cut(s) 19
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 2 cut(s) 289, 297
MwoI GCNNNNNNNGC 1 cut(s) 220
NcoI CCATGG 1 cut(s) 132
NdeII GATC 3 cut(s) 81, 97, 313
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 1 cut(s) 89
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 130
PstI CTGCAG 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 239
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 3 cut(s) 81, 97, 313
SchI GAGTC 1 cut(s) 243
SetI ASST 4 cut(s) 11, 45, 92, 332
SfcI CTRYAG 1 cut(s) 85
Sse9I AATT 1 cut(s) 19
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 332
TaqI TCGA 2 cut(s) 244, 281
TasI AATT 1 cut(s) 19
TfiI GAWTC 1 cut(s) 361
TscAI CASTG 2 cut(s) 204, 357
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 2 cut(s) 204, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.