Rh2DG661000

Proteasome assembly chaperone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015318
Physical Location & Seq
Reverse (-)
88761827 .. 88764046
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG661000.1

Sequence Viewer

Length: 264 bp
ATGGACGACAGCAGCTTCCCTGTTCCTCACAAGAAGTTCTCGTTGGAAATCAAGGGGAACAAAACAGATGTGGTGATTTGCTGTTATGATGATCACTTCCTTGTCATTGCAACTCAAATAGGAACTATGGGGACCATACTGCAAGCCAGTAAGGAGAAAGGTGCAACATTCAATCCAACGTACAGCGTGTCTGTAATCTTTGGCAAGCGAGATGAGCCAATGCTAGAGGCCTGCGCTCGTCAACTTGTGGAACATATCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC3

Protein Analysis

87

Amino Acids

9.72

Weight (kDa)

6.25

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC3 PF10178 35 - 86 7.1e-18 Proteasome assembly chaperone 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14710
fragaria_vesca FvH4_6g50830
malus_domestica MD17G1033600.v1.1
prunus_persica Prupe.3G286100_v2.0.a1
pyrus_communis pycom17g03070
rosa_chinensis RchiOBHm_Chr2g0172221
rosa_laevigata RLG00000022094
rosa_multiflora Rmu_sc0024549.1_g000003 Rmu_sc0025855.1_g000005
rosa_roxburghii Rroxscaffold_2G00080070
rosa_rugosa Rorug02G0557600
rosa_samantha Rh2AG632800 Rh2BG646400 Rh2CG613100 Rh2DG661000
rosa_wichuraiana Rw2G052390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 24
BclI TGATCA 1 cut(s) 91
BfaI CTAG 1 cut(s) 224
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 230
BslFI GGGAC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 91
BspANI GGCC 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 147
BssMI GATC 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 144, 206, 232
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 230
Cac8I GCNNGC 3 cut(s) 144, 206, 232
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 181
CviJI RGCY 4 cut(s) 15, 146, 217, 230
CviKI_1 RGCY 4 cut(s) 15, 146, 217, 230
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco147I AGGCCT 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 132
FaiI YATR 4 cut(s) 87, 128, 137, 255
FaqI GGGAC 1 cut(s) 145
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 230
HhaI GCGC 1 cut(s) 236
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 242
HindII GTYRAC 1 cut(s) 242
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 110, 142, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 179
HspAI GCGC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 33, 160, 244, 244
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 179
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MmeI TCCRAC 2 cut(s) 24, 200
MnlI CCTC 2 cut(s) 36, 220
MwoI GCNNNNNNNGC 1 cut(s) 214
NdeII GATC 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 133
PceI AGGCCT 1 cut(s) 230
PkrI GCNGC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 132
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 132
SetI ASST 4 cut(s) 17, 163, 182, 263
SinI GGWCC 1 cut(s) 132
SseBI AGGCCT 1 cut(s) 230
SspMI CTAG 1 cut(s) 224
StuI AGGCCT 1 cut(s) 230
TaiI ACGT 1 cut(s) 182
TseI GCWGC 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 132
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.