Rorug02G0557600

Proteasome assembly chaperone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015318
Physical Location & Seq
Reverse (-)
68412408 .. 68414738
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0557600.1

Sequence Viewer

Length: 1299 bp
ATGGGAAGTAAAGGTCGAATCCCACCGGCCCATCTCCGGCGTCCTCATCCCGGACCCGACCCGTATGGGCCTGGTGGGCCGGGCACCCGCCCACCTCCGGGTGCCTATTCACCCTTTGACATGTTGCCTCCTCCACAAGTTTTGGAGCAGAAGCTGGCTTCACAGCATGTGGAGATGCAGAGGCTGGCAACAGAGAACCAGAGACTGGCTTCGACGCACGGCAGCCTCAGGCAGGAGCTGGCAGGTGCTCAGCATGAGCTGCAGATACTGCATGCTCAGGCCGGAGCTATGAAGTCGGAGAGGGATCAGCAGATGAGGAGCCTGGTGGATAAGATTGCGAAAATGGAGGCTGAGCTGAAAGCGGCGGAGTCTGTTAAGGTGGAGCTGCAGCAGGCGCGTGCCGAAGCGAATAACTTGGTTGGGGTGAGGCAGGAGAGTATTGTTAAAGTGCAGCAGTTGAGTCAGGATCTTCAGAGGGCGCATGGGGATGTGCAGCAGATTCCGGTTTTGGTTCAGCAACTCGATGGCCTCAGGCAGGAGTATCAGCATTGCAGGGCTACTTTTGACTATGAAAAGAAATTGTACAATGACCACCTTGAATCACTTCAGGTCATGGAGAAGAACTATGTTACCATGGCTAGGGAGGTAGAAAAGCTACGAGCAGAGTTATTGAATAATTCTGGTGCTGATAGAAGAACTGGTGGGTCTTATTATGGGAATCCTGGAACTAATGAAAGTGAGGCTTCTGGGCTTGCTGCAGGACAAAATGCTTATGAAGATAGCTATGGTGTTCCCCAGGGACGTGTCCCCTTCCCTCCTACTGCTGCTGGTGGTGGTCAAAGTGGGCCTGGGGGCAGTGCTGGTGCCGCTTCTGGCGGTGCTGCTGCTGCTGCTGCCGCCCCTGCCGGAACTTCTCCATTTGCTGGATCTCAATCTGGACCTCCTGGAAGGACCGGTTATGATGCACCAAGAGTGCCTGTTGGTTATGATCCCTCTGGAGGATCTGCTTATGATGCACAAAGAACTGGCTATGATCCACAAAGAGGAGCCGTCTATGATCCACAAAGAGGAGCTGTCTATGACGTACATAGGCCAGGTTATGAGGTGCAAAGAGGAACCGGTTATGATCCAACCCGGGGTCTTAACTATGATGCACAGTCCAGAGGTGCTTCTGGTCCTCAGGGACATGTGCCTACAAGCAATATGCCCTATGGTTCAGCCACTCCACCTACTGCTCGAGGGGGAACTGGGTATGAGGCACCGCCACCTCGAGGAGGTGCAAACCCAGTTCGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC3

Protein Analysis

432

Amino Acids

45.77

Weight (kDa)

7.84

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14710
fragaria_vesca FvH4_6g50830
malus_domestica MD17G1033600.v1.1
prunus_persica Prupe.3G286100_v2.0.a1
pyrus_communis pycom17g03070
rosa_chinensis RchiOBHm_Chr2g0172221
rosa_laevigata RLG00000022094
rosa_multiflora Rmu_sc0024549.1_g000003 Rmu_sc0025855.1_g000005
rosa_roxburghii Rroxscaffold_2G00080070
rosa_rugosa Rorug02G0557600
rosa_samantha Rh2AG632800 Rh2BG646400 Rh2CG613100 Rh2DG661000
rosa_wichuraiana Rw2G052390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 233
AbsI CCTCGAGG 1 cut(s) 1269
Acc36I ACCTGC 1 cut(s) 233
AccB1I GGYRCC 4 cut(s) 83, 101, 863, 1258
AccB7I CCANNNNNTGG 2 cut(s) 205, 923
AccII CGCG 1 cut(s) 397
AciI CCGC 7 cut(s) 88, 362, 365, 867, 876, 897, 1262
AclWI GGATC 8 cut(s) 312, 474, 934, 983, 1009, 1028, 1052, 1121
AcuI CTGAAG 2 cut(s) 455, 590
AcyI GRCGYC 1 cut(s) 40
AfaI GTAC 2 cut(s) 584, 1086
AflIII ACRYGT 3 cut(s) 120, 802, 1186
AgeI ACCGGT 2 cut(s) 953, 1118
AgsI TTSAA 2 cut(s) 599, 673
AjiI CACGTC 1 cut(s) 803
AjnI CCWGG 7 cut(s) 70, 321, 721, 795, 847, 943, 1093
AluBI AGCT 9 cut(s) 154, 238, 259, 287, 355, 385, 655, 783, 1073
AluI AGCT 9 cut(s) 154, 238, 259, 287, 355, 385, 655, 783, 1073
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 8 cut(s) 312, 474, 934, 983, 1009, 1028, 1052, 1121
AlwNI CAGNNNCTG 5 cut(s) 154, 184, 205, 238, 268
Ama87I CYCGRG 3 cut(s) 1134, 1236, 1269
AoxI GGCC 7 cut(s) 27, 68, 77, 279, 526, 845, 1091
AsiGI ACCGGT 2 cut(s) 953, 1118
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 2 cut(s) 397, 481
AspS9I GGNCC 8 cut(s) 28, 53, 68, 77, 845, 938, 951, 1175
AsuC2I CCSGG 5 cut(s) 51, 81, 99, 1135, 1136
AsuHPI GGTGA 2 cut(s) 102, 436
AvaI CYCGRG 3 cut(s) 1134, 1236, 1269
AvaII GGWCC 4 cut(s) 53, 938, 951, 1175
AxyI CCTNAGG 3 cut(s) 227, 530, 1179
BaeGI GKGCMC 1 cut(s) 86
BanI GGYRCC 4 cut(s) 83, 101, 863, 1258
Bbv12I GWGCWC 1 cut(s) 250
BccI CCATC 2 cut(s) 39, 518
BceAI ACGGC 2 cut(s) 235, 1034
BciT130I CCWGG 7 cut(s) 72, 323, 723, 797, 849, 945, 1095
BcnI CCSGG 5 cut(s) 51, 81, 99, 1135, 1136
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 3 cut(s) 260, 386, 756
BfuAI ACCTGC 1 cut(s) 233
BglI GCCNNNNNGGC 1 cut(s) 76
BlpI GCTNAGC 2 cut(s) 249, 351
Bme18I GGWCC 4 cut(s) 53, 938, 951, 1175
BmeT110I CYCGRG 3 cut(s) 1134, 1236, 1269
BmgBI CACGTC 1 cut(s) 803
BmgT120I GGNCC 8 cut(s) 28, 53, 68, 77, 845, 938, 951, 1175
BmiI GGNNCC 8 cut(s) 55, 85, 103, 320, 865, 1048, 1117, 1260
BmrI ACTGGG 2 cut(s) 1257, 1280
BmsI GCATC 4 cut(s) 165, 952, 1003, 1141
BmuI ACTGGG 2 cut(s) 1257, 1280
BpmI CTGGAG 1 cut(s) 1017
Bpu10I CCTNAGC 1 cut(s) 276
Bpu1102I GCTNAGC 2 cut(s) 249, 351
BpuMI CCSGG 5 cut(s) 51, 81, 99, 1135, 1136
BsaBI GATNNNNATC 1 cut(s) 931
BsaHI GRCGYC 1 cut(s) 40
BsaJI CCNNGG 6 cut(s) 633, 795, 796, 848, 1134, 1135
BsaWI WCCGGW 3 cut(s) 502, 953, 1118
Bse118I RCCGGY 3 cut(s) 25, 953, 1118
Bse1I ACTGG 5 cut(s) 210, 703, 1030, 1252, 1286
Bse21I CCTNAGG 3 cut(s) 227, 530, 1179
Bse3DI GCAATG 1 cut(s) 547
Bse8I GATNNNNATC 1 cut(s) 931
BseBI CCWGG 7 cut(s) 72, 323, 723, 797, 849, 945, 1095
BseDI CCNNGG 6 cut(s) 633, 795, 796, 848, 1134, 1135
BseGI GGATG 2 cut(s) 46, 493
BseJI GATNNNNATC 1 cut(s) 931
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 6 cut(s) 241, 263, 290, 342, 544, 1193
BseNI ACTGG 5 cut(s) 210, 703, 1030, 1252, 1286
BseRI GAGGAG 5 cut(s) 120, 331, 1059, 1083, 1287
BseSI GKGCMC 1 cut(s) 86
BsgI GTGCAG 2 cut(s) 470, 512
Bsh1236I CGCG 1 cut(s) 397
BshFI GGCC 7 cut(s) 29, 70, 79, 281, 528, 847, 1093
BshNI GGYRCC 4 cut(s) 83, 101, 863, 1258
BshTI ACCGGT 2 cut(s) 953, 1118
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 3 cut(s) 1134, 1236, 1269
BslFI GGGAC 3 cut(s) 791, 813, 1197
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 3 cut(s) 791, 813, 1197
BsnI GGCC 7 cut(s) 29, 70, 79, 281, 528, 847, 1093
BsoBI CYCGRG 3 cut(s) 1134, 1236, 1269
Bsp1286I GDGCHC 2 cut(s) 86, 250
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 8 cut(s) 304, 466, 926, 988, 1001, 1033, 1057, 1126
Bsp1720I GCTNAGC 2 cut(s) 249, 351
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 7 cut(s) 88, 362, 365, 867, 876, 897, 1262
BspANI GGCC 7 cut(s) 29, 70, 79, 281, 528, 847, 1093
BspCNI CTCAG 6 cut(s) 240, 262, 289, 343, 543, 1192
BspFNI CGCG 1 cut(s) 397
BspLI GGNNCC 8 cut(s) 55, 85, 103, 320, 865, 1048, 1117, 1260
BspMAI CTGCAG 3 cut(s) 264, 390, 760
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 8 cut(s) 312, 474, 934, 983, 1009, 1028, 1052, 1121
BspT107I GGYRCC 4 cut(s) 83, 101, 863, 1258
BsrDI GCAATG 1 cut(s) 547
BsrFI RCCGGY 3 cut(s) 25, 953, 1118
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 5 cut(s) 210, 703, 1030, 1252, 1286
BssAI RCCGGY 3 cut(s) 25, 953, 1118
BssECI CCNNGG 6 cut(s) 633, 795, 796, 848, 1134, 1135
BssMI GATC 8 cut(s) 304, 466, 926, 988, 1001, 1033, 1057, 1126
BssNI GRCGYC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 7 cut(s) 72, 323, 723, 797, 849, 945, 1095
Bst4CI ACNGT 1 cut(s) 1158
BstACI GRCGYC 1 cut(s) 40
BstAPI GCANNNNNTGC 2 cut(s) 259, 268
BstAUI TGTACA 1 cut(s) 582
BstC8I GCNNGC 7 cut(s) 156, 186, 240, 273, 393, 399, 753
BstDEI CTNAG 6 cut(s) 227, 249, 276, 351, 530, 1179
BstDSI CCRYGG 1 cut(s) 633
BstENI CCTNNNNNAGG 3 cut(s) 230, 533, 1272
BstF5I GGATG 2 cut(s) 46, 493
BstFNI CGCG 1 cut(s) 397
BstHHI GCGC 2 cut(s) 397, 481
BstKTI GATC 8 cut(s) 307, 469, 929, 991, 1004, 1036, 1060, 1129
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 8 cut(s) 304, 466, 926, 988, 1001, 1033, 1057, 1126
BstNI CCWGG 7 cut(s) 72, 323, 723, 797, 849, 945, 1095
BstNSI RCATGY 4 cut(s) 124, 170, 275, 1190
BstSFI CTRYAG 3 cut(s) 260, 386, 756
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 1 cut(s) 397
BstX2I RGATCY 3 cut(s) 466, 926, 1001
BstYI RGATCY 3 cut(s) 466, 926, 1001
Bsu36I CCTNAGG 3 cut(s) 227, 530, 1179
BsuRI GGCC 7 cut(s) 29, 70, 79, 281, 528, 847, 1093
BtgI CCRYGG 1 cut(s) 633
BtrI CACGTC 1 cut(s) 803
BtsCI GGATG 2 cut(s) 46, 493
BtsI GCAGTG 1 cut(s) 862
BtsIMutI CAGTG 1 cut(s) 862
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 7 cut(s) 156, 186, 240, 273, 393, 399, 753
CaiI CAGNNNCTG 5 cut(s) 154, 184, 205, 238, 268
CfoI GCGC 2 cut(s) 397, 481
Cfr10I RCCGGY 3 cut(s) 25, 953, 1118
Cfr13I GGNCC 8 cut(s) 28, 53, 68, 77, 845, 938, 951, 1175
Cfr9I CCCGGG 1 cut(s) 1134
CseI GACGC 2 cut(s) 29, 223
Csp6I GTAC 2 cut(s) 583, 1085
CspAI ACCGGT 2 cut(s) 953, 1118
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 8 cut(s) 121, 167, 254, 272, 482, 613, 634, 1187
CviQI GTAC 2 cut(s) 583, 1085
DdeI CTNAG 6 cut(s) 227, 249, 276, 351, 530, 1179
DpnI GATC 8 cut(s) 306, 468, 928, 990, 1003, 1035, 1059, 1128
DpnII GATC 8 cut(s) 304, 466, 926, 988, 1001, 1033, 1057, 1126
EciI GGCGGA 1 cut(s) 380
Eco130I CCWWGG 1 cut(s) 633
Eco47I GGWCC 4 cut(s) 53, 938, 951, 1175
Eco57I CTGAAG 2 cut(s) 455, 590
Eco81I CCTNAGG 3 cut(s) 227, 530, 1179
Eco88I CYCGRG 3 cut(s) 1134, 1236, 1269
EcoNI CCTNNNNNAGG 3 cut(s) 230, 533, 1272
EcoRII CCWGG 7 cut(s) 70, 321, 721, 795, 847, 943, 1093
EcoT14I CCWWGG 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 8 cut(s) 124, 170, 257, 275, 485, 616, 637, 1190
FalI AAGNNNNNCTT 2 cut(s) 727, 759
FaqI GGGAC 3 cut(s) 791, 813, 1197
FatI CATG 8 cut(s) 120, 166, 253, 271, 481, 612, 633, 1186
FauI CCCGC 1 cut(s) 95
FokI GGATG 2 cut(s) 33, 500
FspBI CTAG 1 cut(s) 639
GlaI GCGC 2 cut(s) 396, 480
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 7 cut(s) 29, 70, 79, 281, 528, 847, 1093
HgaI GACGC 2 cut(s) 29, 223
HhaI GCGC 2 cut(s) 397, 481
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 8 cut(s) 124, 170, 257, 275, 485, 616, 637, 1190
Hin6I GCGC 2 cut(s) 395, 479
HinP1I GCGC 2 cut(s) 395, 479
HinfI GANTC 6 cut(s) 18, 368, 460, 499, 599, 718
HphI GGTGA 2 cut(s) 102, 436
Hpy188I TCNGA 2 cut(s) 298, 474
Hpy188III TCNNGA 4 cut(s) 464, 936, 996, 1161
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 820, 942
HpyCH4III ACNGT 1 cut(s) 1158
HpyCH4IV ACGT 2 cut(s) 802, 1083
HpyF3I CTNAG 6 cut(s) 227, 249, 276, 351, 530, 1179
HpySE526I ACGT 2 cut(s) 802, 1083
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 8 cut(s) 124, 170, 257, 275, 485, 616, 637, 1190
HspAI GCGC 2 cut(s) 395, 479
Kzo9I GATC 8 cut(s) 304, 466, 926, 988, 1001, 1033, 1057, 1126
LmnI GCTCC 7 cut(s) 145, 235, 284, 318, 382, 1046, 1070
LweI GCATC 4 cut(s) 165, 952, 1003, 1141
MaeI CTAG 1 cut(s) 639
MaeII ACGT 2 cut(s) 802, 1083
MaeIII GTNAC 1 cut(s) 628
MalI GATC 8 cut(s) 306, 468, 928, 990, 1003, 1035, 1059, 1128
MboI GATC 8 cut(s) 304, 466, 926, 988, 1001, 1033, 1057, 1126
MboII GAAGA 4 cut(s) 461, 631, 705, 788
MflI RGATCY 3 cut(s) 466, 926, 1001
MhlI GDGCHC 2 cut(s) 86, 250
MluCI AATT 2 cut(s) 578, 676
MlyI GAGTC 2 cut(s) 377, 469
MmeI TCCRAC 2 cut(s) 276, 1154
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 3 cut(s) 375, 444, 1143
MslI CAYNNNNRTG 1 cut(s) 486
MvaI CCWGG 7 cut(s) 72, 323, 723, 797, 849, 945, 1095
MvnI CGCG 1 cut(s) 397
NciI CCSGG 5 cut(s) 51, 81, 99, 1135, 1136
NcoI CCATGG 1 cut(s) 633
NdeII GATC 8 cut(s) 304, 466, 926, 988, 1001, 1033, 1057, 1126
NlaIII CATG 8 cut(s) 124, 170, 257, 275, 485, 616, 637, 1190
NlaIV GGNNCC 8 cut(s) 55, 85, 103, 320, 865, 1048, 1117, 1260
NspI RCATGY 4 cut(s) 124, 170, 275, 1190
PaeI GCATGC 1 cut(s) 275
PaeR7I CTCGAG 2 cut(s) 1236, 1269
PaqCI CACCTGC 1 cut(s) 233
PasI CCCWGGG 1 cut(s) 796
PciI ACATGT 2 cut(s) 120, 1186
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 4 cut(s) 18, 499, 599, 718
PflMI CCANNNNNTGG 2 cut(s) 205, 923
PfoI TCCNGGA 3 cut(s) 49, 721, 943
PinAI ACCGGT 2 cut(s) 953, 1118
PleI GAGTC 2 cut(s) 376, 468
PpsI GAGTC 2 cut(s) 376, 468
PscI ACATGT 2 cut(s) 120, 1186
Psp6I CCWGG 7 cut(s) 70, 321, 721, 795, 847, 943, 1093
PspGI CCWGG 7 cut(s) 70, 321, 721, 795, 847, 943, 1093
PspN4I GGNNCC 8 cut(s) 55, 85, 103, 320, 865, 1048, 1117, 1260
PspPI GGNCC 8 cut(s) 28, 53, 68, 77, 845, 938, 951, 1175
PspXI VCTCGAGB 2 cut(s) 1236, 1269
PstI CTGCAG 3 cut(s) 264, 390, 760
PstNI CAGNNNCTG 5 cut(s) 154, 184, 205, 238, 268
PsuI RGATCY 3 cut(s) 466, 926, 1001
RsaI GTAC 2 cut(s) 584, 1086
RsaNI GTAC 2 cut(s) 583, 1085
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 3 cut(s) 375, 444, 1143
Sau3AI GATC 8 cut(s) 304, 466, 926, 988, 1001, 1033, 1057, 1126
Sau96I GGNCC 8 cut(s) 28, 53, 68, 77, 845, 938, 951, 1175
SchI GAGTC 2 cut(s) 377, 469
SduI GDGCHC 2 cut(s) 86, 250
SfaNI GCATC 4 cut(s) 165, 952, 1003, 1141
SfcI CTRYAG 3 cut(s) 260, 386, 756
SfiI GGCCNNNNNGGCC 1 cut(s) 76
Sfr274I CTCGAG 2 cut(s) 1236, 1269
SinI GGWCC 4 cut(s) 53, 938, 951, 1175
SlaI CTCGAG 2 cut(s) 1236, 1269
SmaI CCCGGG 1 cut(s) 1136
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 2 cut(s) 1236, 1269
SmoI CTYRAG 2 cut(s) 1236, 1269
SphI GCATGC 1 cut(s) 275
Sse9I AATT 2 cut(s) 578, 676
SsiI CCGC 7 cut(s) 88, 362, 365, 867, 876, 897, 1262
SspMI CTAG 1 cut(s) 639
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 1158
TaiI ACGT 2 cut(s) 805, 1086
TaqI TCGA 5 cut(s) 16, 212, 522, 1237, 1270
TasI AATT 2 cut(s) 578, 676
TatI WGTACW 1 cut(s) 582
TauI GCSGC 3 cut(s) 365, 869, 899
TfiI GAWTC 4 cut(s) 18, 499, 599, 718
Tru1I TTAA 3 cut(s) 375, 444, 1143
Tru9I TTAA 3 cut(s) 375, 444, 1143
TscAI CASTG 1 cut(s) 862
TspDTI ATGAA 4 cut(s) 305, 585, 747, 789
TspMI CCCGGG 1 cut(s) 1134
TspRI CASTG 1 cut(s) 862
Van91I CCANNNNNTGG 2 cut(s) 205, 923
VpaK11BI GGWCC 4 cut(s) 53, 938, 951, 1175
XagI CCTNNNNNAGG 3 cut(s) 230, 533, 1272
XceI RCATGY 4 cut(s) 124, 170, 275, 1190
XhoI CTCGAG 2 cut(s) 1236, 1269
XmaI CCCGGG 1 cut(s) 1134
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.