Rmu_sc0024549.1_g000003

Proteasome assembly chaperone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024549.1
OG0015318
Physical Location & Seq
Reverse (-)
4104 .. 5490
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024549.1_g000003.1.cds

Sequence Viewer

Length: 369 bp
atggacgacagcagcttccctgttcctcacaagaagttctcgttggaaatcaaggggaacaaaacagatgtggtgatttgctgttatgatgatcacttccttgtcattgcaactcaaataggaactatggggaccatactgcaagccagtaaggaggaaggtgcaacattcaatccaacgtacagcgtgtctgtaatctttggcaagcgagatgagccaatgctagaggcctgcgctcgtcaacttgtggaacatatcagtaattcgcgctcttccaggccattgttgctttctcttggtctcaaagaccattcagtggagacactgaaaggcattgtatctgctgtaatcgaaaatcgcctttggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC3

Protein Analysis

122

Amino Acids

13.52

Weight (kDa)

6.05

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14710
fragaria_vesca FvH4_6g50830
malus_domestica MD17G1033600.v1.1
prunus_persica Prupe.3G286100_v2.0.a1
pyrus_communis pycom17g03070
rosa_chinensis RchiOBHm_Chr2g0172221
rosa_laevigata RLG00000022094
rosa_multiflora Rmu_sc0024549.1_g000003 Rmu_sc0025855.1_g000005
rosa_roxburghii Rroxscaffold_2G00080070
rosa_rugosa Rorug02G0557600
rosa_samantha Rh2AG632800 Rh2BG646400 Rh2CG613100 Rh2DG661000
rosa_wichuraiana Rw2G052390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 316
AccII CGCG 1 cut(s) 268
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 275
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 2 cut(s) 305, 314
AoxI GGCC 2 cut(s) 228, 278
ApeKI GCWGC 1 cut(s) 12
AspLEI GCGC 2 cut(s) 236, 270
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 277
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 305, 314
BfaI CTAG 1 cut(s) 224
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 230, 280
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 2 cut(s) 305, 314
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 2 cut(s) 230, 280
Bso31I GGTCTC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 91
BspANI GGCC 2 cut(s) 230, 280
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 147
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 277
BstC8I GCNNGC 3 cut(s) 144, 206, 232
BstFNI CGCG 1 cut(s) 268
BstHHI GCGC 2 cut(s) 236, 270
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 2 cut(s) 305, 314
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 214, 286
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 2 cut(s) 230, 280
BtsIMutI CAGTG 2 cut(s) 321, 323
Cac8I GCNNGC 3 cut(s) 144, 206, 232
CfoI GCGC 2 cut(s) 236, 270
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 181
CviJI RGCY 5 cut(s) 15, 146, 217, 230, 280
CviKI_1 RGCY 5 cut(s) 15, 146, 217, 230, 280
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco147I AGGCCT 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 275
FaiI YATR 4 cut(s) 87, 128, 137, 255
FaqI GGGAC 1 cut(s) 145
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 224
GlaI GCGC 2 cut(s) 235, 269
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 2 cut(s) 230, 280
HhaI GCGC 2 cut(s) 236, 270
Hin6I GCGC 2 cut(s) 234, 268
HinP1I GCGC 2 cut(s) 234, 268
HincII GTYRAC 1 cut(s) 242
HindII GTYRAC 1 cut(s) 242
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 110, 142, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 286
HpySE526I ACGT 1 cut(s) 179
HspAI GCGC 2 cut(s) 234, 268
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 277
LpnPI CCDG 5 cut(s) 33, 160, 244, 262, 289
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 179
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 264
MluCI AATT 1 cut(s) 262
MmeI TCCRAC 2 cut(s) 24, 200
MnlI CCTC 3 cut(s) 36, 148, 220
MspR9I CCNGG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 2 cut(s) 214, 286
NdeII GATC 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 133
PceI AGGCCT 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 132
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 277
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 277
SetI ASST 3 cut(s) 17, 163, 182
SinI GGWCC 1 cut(s) 132
Sse9I AATT 1 cut(s) 262
SseBI AGGCCT 1 cut(s) 230
SspMI CTAG 1 cut(s) 224
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 275
TaiI ACGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 351
TasI AATT 1 cut(s) 262
TscAI CASTG 2 cut(s) 321, 330
TseI GCWGC 1 cut(s) 12
TspRI CASTG 2 cut(s) 321, 330
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 132
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.