MD17G1033600.v1.1

Proteasome assembly chaperone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015318
Physical Location & Seq
Forward (+)
2397633 .. 2399487
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1033600.v1.1.491

Sequence Viewer

Length: 363 bp
ATGGGCAGCTTCCCGGTTGCCGACAAGAAATTTTCCTTGGAAATTAAGGGGAACAAGACGGATGTAGTGATGTGCAGTTATGATGATCATTTTCTTGTTATTGCAACTCAAATTGGAGCTATGGGCACCATACTGCAAGCCAGGAAGGAGGAAGGGATGGCAATCCATCCGACATTCAACGTGGCTGTAATCTTCGGCAAGCGAGACGAGCCAATGCTAGTGTCATGTGCTCGTCAGCTTATTGAACACATCAGTAACTCGGGCTCCTCAAAGCCGTTAATGCTTTCTCTTGGTCTCAAAGATCATTCAGCGGAGACACTGAAAAGCATTGTTTCAGCTGTTATCGAGAATCGCTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC3

Protein Analysis

121

Amino Acids

13.2

Weight (kDa)

6.9

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC3 PF10178 33 - 117 6e-32 Proteasome assembly chaperone 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14710
fragaria_vesca FvH4_6g50830
malus_domestica MD17G1033600.v1.1
prunus_persica Prupe.3G286100_v2.0.a1
pyrus_communis pycom17g03070
rosa_chinensis RchiOBHm_Chr2g0172221
rosa_laevigata RLG00000022094
rosa_multiflora Rmu_sc0024549.1_g000003 Rmu_sc0025855.1_g000005
rosa_roxburghii Rroxscaffold_2G00080070
rosa_rugosa Rorug02G0557600
rosa_samantha Rh2AG632800 Rh2BG646400 Rh2CG613100 Rh2DG661000
rosa_wichuraiana Rw2G052390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 1 cut(s) 311
AcsI RAATTY 1 cut(s) 29
AgsI TTSAA 2 cut(s) 178, 245
AjnI CCWGG 1 cut(s) 140
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 4 cut(s) 9, 119, 238, 338
AluI AGCT 4 cut(s) 9, 119, 238, 338
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 3 cut(s) 198, 299, 308
Ama87I CYCGRG 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 353
AsuC2I CCSGG 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 18
BccI CCATC 2 cut(s) 151, 174
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 142
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 3 cut(s) 198, 299, 308
BfaI CTAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 14, 142
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 127, 265
BmrFI CCNGG 2 cut(s) 14, 142
BpuMI CCSGG 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 67, 162, 166
BseJI GATNNNNATC 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 256
BseSI GKGCMC 1 cut(s) 128
BseXI GCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 94
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 3 cut(s) 198, 299, 308
BsmBI CGTCTC 1 cut(s) 198
Bso31I GGTCTC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 3 cut(s) 128, 232, 266
Bsp143I GATC 2 cut(s) 85, 301
BspACI CCGC 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 127, 265
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 85, 301
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 138, 200
BstF5I GGATG 3 cut(s) 67, 162, 166
BstKTI GATC 2 cut(s) 88, 304
BstMAI GTCTC 3 cut(s) 198, 299, 308
BstMBI GATC 2 cut(s) 85, 301
BstMWI GCNNNNNNNGC 2 cut(s) 208, 280
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 12, 140
BstSLI GKGCMC 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 18
BtsCI GGATG 3 cut(s) 67, 162, 166
BtsIMutI CAGTG 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 138, 200
CviAII CATG 1 cut(s) 225
CviJI RGCY 9 cut(s) 9, 119, 140, 185, 211, 238, 264, 274, 338
CviKI_1 RGCY 9 cut(s) 9, 119, 140, 185, 211, 238, 264, 274, 338
DpnI GATC 2 cut(s) 87, 303
DpnII GATC 2 cut(s) 85, 301
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 1 cut(s) 228
FaiI YATR 4 cut(s) 81, 122, 131, 226
FatI CATG 1 cut(s) 224
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 3 cut(s) 74, 153, 169
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 1 cut(s) 218
GluI GCNGC 1 cut(s) 7
HapII CCGG 1 cut(s) 14
Hin1II CATG 1 cut(s) 228
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 139, 146
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 75, 104, 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 280
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 85, 301
LmnI GCTCC 2 cut(s) 116, 269
LpnPI CCDG 4 cut(s) 27, 127, 154, 343
Lsp1109I GCAGC 1 cut(s) 18
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 87, 303
MboI GATC 2 cut(s) 85, 301
MboII GAAGA 1 cut(s) 184
MhlI GDGCHC 3 cut(s) 128, 232, 266
MluCI AATT 3 cut(s) 29, 42, 111
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 2 cut(s) 142, 277
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 2 cut(s) 45, 278
MspA1I CMGCKG 2 cut(s) 311, 338
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 14, 142
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 208, 280
NciI CCSGG 1 cut(s) 14
NdeII GATC 2 cut(s) 85, 301
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 2 cut(s) 127, 265
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 127, 265
PvuII CAGCTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 45, 278
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 2 cut(s) 85, 301
ScrFI CCNGG 2 cut(s) 14, 142
SduI GDGCHC 3 cut(s) 128, 232, 266
SetI ASST 5 cut(s) 11, 121, 183, 240, 340
Sse9I AATT 3 cut(s) 29, 42, 111
SsiI CCGC 1 cut(s) 311
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 12, 140
StyI CCWWGG 1 cut(s) 36
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 345
TasI AATT 3 cut(s) 29, 42, 111
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 2 cut(s) 45, 278
Tru9I TTAA 2 cut(s) 45, 278
TscAI CASTG 1 cut(s) 324
TseI GCWGC 1 cut(s) 6
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 324
XapI RAATTY 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.