FvH4_6g50830

Proteasome assembly chaperone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015318
Physical Location & Seq
Reverse (-)
37790561 .. 37792178
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50830.t1

Sequence Viewer

Length: 369 bp
ATGGACTCCAGTAGCTTCCCTGTTCCTCACAAAAAGTTCTCTTTGGAAATCAAGGGGATCAAAACAGATGTGGTGATTTGCTGTTATGATGATCACTTCCTCGTTATTGCAACTCAAATAGGAGCTATGGGAACTATACTGCAAGCCAGTAAGGAGGAAGGGGCGACATTCAACCCAACGTACAGCGTGTCTGTAATCTTTGGCAAGCGAGATGAGCCAATGCTAGAGGCATGTGCTCGTCAACTTGTGGAACACATCAGTAATTCACGCTCTTCCAGGCCATTAATGCTTTCTCTTGGTCTCAAAGACCATTCAGCGGAGACATTGAAAGGCATTGTTGCTGCTGTTATCGAGAATCGCCTGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC3

Protein Analysis

123

Amino Acids

13.44

Weight (kDa)

6.4

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC3 PF10178 35 - 119 2.6e-31 Proteasome assembly chaperone 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14710
fragaria_vesca FvH4_6g50830
malus_domestica MD17G1033600.v1.1
prunus_persica Prupe.3G286100_v2.0.a1
pyrus_communis pycom17g03070
rosa_chinensis RchiOBHm_Chr2g0172221
rosa_laevigata RLG00000022094
rosa_multiflora Rmu_sc0024549.1_g000003 Rmu_sc0025855.1_g000005
rosa_roxburghii Rroxscaffold_2G00080070
rosa_rugosa Rorug02G0557600
rosa_samantha Rh2AG632800 Rh2BG646400 Rh2CG613100 Rh2DG661000
rosa_wichuraiana Rw2G052390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 317
AclWI GGATC 1 cut(s) 65
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 2 cut(s) 172, 328
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 2 cut(s) 15, 125
AluI AGCT 2 cut(s) 15, 125
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 2 cut(s) 305, 314
AlwI GGATC 1 cut(s) 65
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 341
AseI ATTAAT 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 277
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 305, 314
BfaI CTAG 1 cut(s) 224
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 9, 147
BseBI CCWGG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 316
BseNI ACTGG 2 cut(s) 9, 147
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 2 cut(s) 305, 314
BsnI GGCC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 2 cut(s) 57, 91
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 280
BspPI GGATC 1 cut(s) 65
BspQI GCTCTTC 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 305
BsrI ACTGG 2 cut(s) 9, 147
BssMI GATC 2 cut(s) 57, 91
Bst2UI CCWGG 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 144, 206
BstKTI GATC 2 cut(s) 60, 94
BstMAI GTCTC 2 cut(s) 305, 314
BstMBI GATC 2 cut(s) 57, 91
BstMWI GCNNNNNNNGC 2 cut(s) 214, 286
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 328
BsuRI GGCC 1 cut(s) 280
Cac8I GCNNGC 2 cut(s) 144, 206
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 231
CviJI RGCY 5 cut(s) 15, 125, 146, 217, 280
CviKI_1 RGCY 5 cut(s) 15, 125, 146, 217, 280
CviQI GTAC 1 cut(s) 181
DpnI GATC 2 cut(s) 59, 93
DpnII GATC 2 cut(s) 57, 91
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 275
FaeI CATG 1 cut(s) 234
FaiI YATR 4 cut(s) 87, 128, 137, 232
FatI CATG 1 cut(s) 230
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 224
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 1 cut(s) 280
Hin1II CATG 1 cut(s) 234
HincII GTYRAC 1 cut(s) 242
HindII GTYRAC 1 cut(s) 242
HinfI GANTC 2 cut(s) 5, 355
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 110, 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 286
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 57, 91
LguI GCTCTTC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 5 cut(s) 22, 33, 160, 262, 289
Lsp1109I GCAGC 1 cut(s) 328
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 179
MalI GATC 2 cut(s) 59, 93
MboI GATC 2 cut(s) 57, 91
MboII GAAGA 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 1 cut(s) 262
MnlI CCTC 4 cut(s) 36, 110, 148, 220
MseI TTAA 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 214, 286
NdeII GATC 2 cut(s) 57, 91
NlaIII CATG 1 cut(s) 234
NspI RCATGY 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 277
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 57, 91
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 238
SetI ASST 3 cut(s) 17, 127, 182
Sse9I AATT 1 cut(s) 262
SsiI CCGC 1 cut(s) 317
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 275
TaiI ACGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 351
TasI AATT 1 cut(s) 262
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TseI GCWGC 1 cut(s) 341
VspI ATTAAT 1 cut(s) 284
XceI RCATGY 1 cut(s) 234
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.