AT5G15970

Stress-induced protein KIN2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009815
Physical Location & Seq
Forward (+)
5211719 .. 5212743
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15970.1

Sequence Viewer

Length: 201 bp
ATGTCAGAGACCAACAAGAATGCCTTCCAAGCCGGTCAGGCCGCTGGCAAAGCTGAGGAGAAGAGCAATGTTCTGCTGGACAAGGCCAAGGATGCTGCTGCTGCAGCTGGAGCTTCCGCGCAACAGGCGGGAAAGAGTATATCGGATGCGGCAGTGGGAGGTGTTAACTTCGTGAAGGACAAGACCGGCCTGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

6.55

Weight (kDa)

9.1

Isoelectric Point (pI)

22.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 119
AciI CCGC 4 cut(s) 42, 117, 128, 149
AluBI AGCT 3 cut(s) 53, 107, 113
AluI AGCT 3 cut(s) 53, 107, 113
Alw26I GTCTC 1 cut(s) 2
AoxI GGCC 3 cut(s) 39, 84, 187
ApeKI GCWGC 4 cut(s) 95, 98, 101, 104
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 121
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 4 cut(s) 82, 85, 88, 116
BcoDI GTCTC 1 cut(s) 2
BfmI CTRYAG 1 cut(s) 102
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 6 cut(s) 42, 96, 99, 102, 105, 150
BlsI GCNGC 6 cut(s) 43, 97, 100, 103, 106, 151
BmsI GCATC 2 cut(s) 82, 136
BpmI CTGGAG 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 1 cut(s) 87
Bse118I RCCGGY 2 cut(s) 32, 185
Bse3DI GCAATG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 2 cut(s) 97, 151
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 4 cut(s) 82, 85, 88, 116
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 3 cut(s) 41, 86, 189
BsiSI CCGG 2 cut(s) 33, 186
BsmAI GTCTC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 3 cut(s) 41, 86, 189
Bso31I GGTCTC 1 cut(s) 2
BspACI CCGC 4 cut(s) 42, 117, 128, 149
BspANI GGCC 3 cut(s) 41, 86, 189
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 2
BsrDI GCAATG 1 cut(s) 73
BsrFI RCCGGY 2 cut(s) 32, 185
BssAI RCCGGY 2 cut(s) 32, 185
BssECI CCNNGG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 97, 151
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 2
BstMWI GCNNNNNNNGC 8 cut(s) 29, 38, 50, 92, 101, 104, 110, 125
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 4 cut(s) 82, 85, 88, 116
BsuRI GGCC 3 cut(s) 41, 86, 189
BtsCI GGATG 2 cut(s) 97, 151
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 46
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 2 cut(s) 32, 185
CviJI RGCY 7 cut(s) 32, 41, 53, 86, 107, 113, 189
CviKI_1 RGCY 7 cut(s) 32, 41, 53, 86, 107, 113, 189
DdeI CTNAG 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 2
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaiI YATR 1 cut(s) 140
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 6 cut(s) 42, 96, 99, 102, 105, 150
FokI GGATG 2 cut(s) 104, 158
Fsp4HI GCNGC 6 cut(s) 42, 96, 99, 102, 105, 150
GlaI GCGC 1 cut(s) 120
GluI GCNGC 6 cut(s) 42, 96, 99, 102, 105, 150
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 3 cut(s) 41, 86, 189
HapII CCGG 2 cut(s) 33, 186
HhaI GCGC 1 cut(s) 121
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HpaI GTTAAC 1 cut(s) 166
HpaII CCGG 2 cut(s) 33, 186
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 7, 145
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 34, 169
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 8 cut(s) 29, 38, 50, 92, 101, 104, 110, 125
HpyF3I CTNAG 1 cut(s) 54
HspAI GCGC 1 cut(s) 119
KspAI GTTAAC 1 cut(s) 166
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 6 cut(s) 23, 30, 46, 62, 93, 110
Lsp1109I GCAGC 4 cut(s) 82, 85, 88, 116
LweI GCATC 2 cut(s) 82, 136
MboII GAAGA 1 cut(s) 73
MnlI CCTC 2 cut(s) 49, 152
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 44, 107
MspI CCGG 2 cut(s) 33, 186
Mva1269I GAATGC 1 cut(s) 25
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 8 cut(s) 29, 38, 50, 92, 101, 104, 110, 125
PciSI GCTCTTC 1 cut(s) 56
PctI GAATGC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 23
PkrI GCNGC 6 cut(s) 43, 97, 100, 103, 106, 151
PstI CTGCAG 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 6 cut(s) 42, 96, 99, 102, 105, 150
SetI ASST 4 cut(s) 55, 109, 115, 163
SfaNI GCATC 2 cut(s) 82, 136
SfcI CTRYAG 1 cut(s) 102
SsiI CCGC 4 cut(s) 42, 117, 128, 149
StyI CCWWGG 1 cut(s) 87
TauI GCSGC 2 cut(s) 44, 152
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 159
TseI GCWGC 4 cut(s) 95, 98, 101, 104
TspRI CASTG 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.