Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009305

Physical Location & Seq

Genomic Coordinates Forward (+)

5483260 .. 5485185

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGATAAGCCTTAGGTTTCAACCAAGCACCACCGCCGGTGTTTTATCGGCGTCAGTGAGCCGCGCCGGTTTTATCAAGCGGTGCGGTTCGACTAAACCGGGAAGGGTTGGCCGGTTTGTTACAATGGCGACGGCGGCGAGTCCTCTTGAAATCTGCGTTAAAGCTTCTATCACCACTCCCAACAAGCTCGGAGACTGCCCTTTTTGCCAAAAGGTGTTACTGACAATGGAGGAGAAGAATGTTCCTTATGACATGAAAATGGTGGATTTGAGTAACAAACCAGAATGGTTCTTGAAGATTAGTCCAGAAGGTAAAGTCCCAGTTGTGAAGTTTGATGAGAAATGGGTTCCGGATTCAGATGTTATAACACAGGCTTTAGAAGAGAAGTATCCTGAGCCTCCTCTTGCTACCCCACCTGAAAAGGCTTCAGTTGGATCGAAGATCTTTTCCACATTTGTCGGTTTTCTGAAGAGCAAAGATTCAGGAGATGGAACTGAGCAAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCACCAAAGTTATACCACATGAAGATTGCATTGGGACATTACAAGAACTGGTCTGTTCCAGATTCACTTCCTTTCGTCAAATCCTACATGGAGAATGTTTTCTCGAGGGAATCATTCACGAACACACGGGCGGAAACAGAGGATGTAATTGCTGGTTGGAGACCAAAGGTTATGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010731 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016667 GO:0016672 GO:0016740 GO:0016765 GO:0019538 GO:0031967 GO:0031975 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045174 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901564 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 ko01100 map00053 map00480 map01100

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

258

Amino Acids

28.51

Weight (kDa)

7.59

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLIC-like_N	PF22441	48 - 130	1.2e-11	CLIC-like N-terminal domain
GST_N_3	PF13417	65 - 134	2.7e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	66 - 128	6e-18	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	169 - 230	5.7e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16710
fragaria_vesca	FvH4_1g28700 FvH4_1g28700 FvH4_1g28700 FvH4_1g28700
malus_domestica	MD09G1264700.v1.1 MD17G1260600.v1.1
prunus_persica	Prupe.3G162300_v2.0.a1 Prupe.3G162300_v2.0.a1
pyrus_communis	pycom09g17830 pycom17g26130
rosa_chinensis	RchiOBHm_Chr3g0493051
rosa_laevigata	RLG00000022732
rosa_multiflora	Rmu_sc0003941.1_g000013
rosa_roxburghii	Rroxscaffold_6G00391890
rosa_rugosa	Rorug03G0258700 Rorug03G0258700
rosa_samantha	Rh3AG307800 Rh3BG343200 Rh3CG340600 Rh3DG343000
rosa_wichuraiana	Rw3G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	598
AccII	CGCG	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	6 cut(s)	33, 61, 79, 84, 134, 728
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	109
AcuI	CTGAAG	2 cut(s)	411, 488
AcyI	GRCGYC	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	20, 149, 295, 529
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	3 cut(s)	164, 187, 517
AluI	AGCT	3 cut(s)	164, 187, 517
Alw26I	GTCTC	2 cut(s)	186, 751
AlwI	GGATC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	700
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	2 cut(s)	109, 550
ApeKI	GCWGC	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	695
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	700
AxyI	CCTNAGG	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	598
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	1 cut(s)	482
BceAI	ACGGC	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	186, 751
BfuI	GTATCC	1 cut(s)	399
BglII	AGATCT	2 cut(s)	441, 573
BisI	GCNGC	3 cut(s)	61, 135, 582
BlsI	GCNGC	3 cut(s)	62, 136, 583
Bme1390I	CCNGG	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	348, 600
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	560, 592
Bpu10I	CCTNAGC	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	751
BsaJI	CCNNGG	1 cut(s)	594
BsaWI	WCCGGW	1 cut(s)	349
Bse118I	RCCGGY	3 cut(s)	35, 65, 111
Bse1I	ACTGG	2 cut(s)	320, 650
Bse21I	CCTNAGG	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	2 cut(s)	517, 745
BseMII	CTCAG	2 cut(s)	384, 486
BseNI	ACTGG	2 cut(s)	320, 650
BseRI	GAGGAG	2 cut(s)	245, 390
BseXI	GCAGC	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	111, 552
BshNI	GGYRCC	1 cut(s)	598
BsiHKCI	CYCGRG	1 cut(s)	700
BsiSI	CCGG	5 cut(s)	36, 66, 98, 112, 350
BslFI	GGGAC	2 cut(s)	302, 645
BsmAI	GTCTC	2 cut(s)	186, 751
BsmFI	GGGAC	2 cut(s)	302, 645
BsnI	GGCC	2 cut(s)	111, 552
Bso31I	GGTCTC	1 cut(s)	751
BsoBI	CYCGRG	1 cut(s)	700
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	434, 441, 573
BspACI	CCGC	6 cut(s)	33, 61, 79, 84, 134, 728
BspANI	GGCC	2 cut(s)	111, 552
BspCNI	CTCAG	2 cut(s)	385, 487
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	348, 600
BspPI	GGATC	1 cut(s)	442
BspQI	GCTCTTC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	1 cut(s)	751
BsrFI	RCCGGY	3 cut(s)	35, 65, 111
BsrI	ACTGG	2 cut(s)	320, 650
BssAI	RCCGGY	3 cut(s)	35, 65, 111
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	3 cut(s)	434, 441, 573
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	594
Bst6I	CTCTTC	2 cut(s)	375, 464
BstACI	GRCGYC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	11, 393, 495
BstF5I	GGATG	2 cut(s)	517, 745
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	3 cut(s)	437, 444, 576
BstMAI	GTCTC	2 cut(s)	186, 751
BstMBI	GATC	3 cut(s)	434, 441, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 204
BstSCI	CCNGG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	593
BstX2I	RGATCY	2 cut(s)	441, 573
BstYI	RGATCY	2 cut(s)	441, 573
Bsu36I	CCTNAGG	1 cut(s)	11
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	111, 552
BtsCI	GGATG	2 cut(s)	517, 745
BtsIMutI	CAGTG	1 cut(s)	60
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	3 cut(s)	35, 65, 111
Cfr13I	GGNCC	1 cut(s)	551
CseI	GACGC	1 cut(s)	39
CviAII	CATG	3 cut(s)	253, 616, 685
DdeI	CTNAG	3 cut(s)	11, 393, 495
DpnI	GATC	3 cut(s)	436, 443, 575
DpnII	GATC	3 cut(s)	434, 441, 573
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	375, 464
EarI	CTCTTC	2 cut(s)	375, 464
EciI	GGCGGA	1 cut(s)	743
Eco130I	CCWWGG	1 cut(s)	594
Eco31I	GGTCTC	1 cut(s)	751
Eco57I	CTGAAG	2 cut(s)	411, 488
Eco81I	CCTNAGG	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	3 cut(s)	256, 619, 688
FaiI	YATR	9 cut(s)	249, 254, 365, 537, 560, 610, 617, 686, 770
FaqI	GGGAC	2 cut(s)	302, 645
FatI	CATG	3 cut(s)	252, 615, 684
Fnu4HI	GCNGC	3 cut(s)	61, 135, 582
FokI	GGATG	2 cut(s)	524, 752
Fsp4HI	GCNGC	3 cut(s)	61, 135, 582
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	3 cut(s)	61, 135, 582
HaeIII	GGCC	2 cut(s)	111, 552
HapII	CCGG	5 cut(s)	36, 66, 98, 112, 350
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	256, 619, 688
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	5 cut(s)	139, 353, 479, 659, 707
HpaII	CCGG	5 cut(s)	36, 66, 98, 112, 350
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	191, 358, 468
Hpy188III	TCNNGA	9 cut(s)	146, 292, 305, 350, 392, 483, 656, 700, 715
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	96, 302
HpyCH4V	TGCA	1 cut(s)	626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 204
HpyF3I	CTNAG	3 cut(s)	11, 393, 495
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	256, 619, 688
HspAI	GCGC	1 cut(s)	63
Kpn2I	TCCGGA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	434, 441, 573
LguI	GCTCTTC	1 cut(s)	464
Lsp1109I	GCAGC	1 cut(s)	593
MaeIII	GTNAC	3 cut(s)	118, 216, 272
MalI	GATC	3 cut(s)	436, 443, 575
MboI	GATC	3 cut(s)	434, 441, 573
MboII	GAAGA	7 cut(s)	247, 307, 392, 451, 481, 583, 631
MflI	RGATCY	2 cut(s)	441, 573
MluCI	AATT	1 cut(s)	744
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	3 cut(s)	412, 489, 734
MnlI	CCTC	6 cut(s)	153, 223, 408, 411, 696, 730
MroI	TCCGGA	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	695
MseI	TTAA	2 cut(s)	159, 775
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	5 cut(s)	36, 66, 98, 112, 350
MspR9I	CCNGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	134, 204
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	434, 441, 573
NlaIII	CATG	3 cut(s)	256, 619, 688
NlaIV	GGNNCC	2 cut(s)	348, 600
NmeAIII	GCCGAG	1 cut(s)	557
PaeR7I	CTCGAG	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	695
PfeI	GAWTC	4 cut(s)	353, 479, 659, 707
PkrI	GCNGC	3 cut(s)	62, 136, 583
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	348, 600
PspPI	GGNCC	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	441, 573
RseI	CAYNNNNRTG	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	159, 775
SatI	GCNGC	3 cut(s)	61, 135, 582
Sau3AI	GATC	3 cut(s)	434, 441, 573
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	8 cut(s)	17, 166, 189, 216, 313, 418, 519, 768
Sfr274I	CTCGAG	1 cut(s)	700
SgrAI	CRCCGGYG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	700
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
Sse9I	AATT	1 cut(s)	744
SsiI	CCGC	6 cut(s)	33, 61, 79, 84, 134, 728
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	594
TaqI	TCGA	3 cut(s)	89, 437, 701
TasI	AATT	1 cut(s)	744
TauI	GCSGC	2 cut(s)	63, 137
TfiI	GAWTC	4 cut(s)	353, 479, 659, 707
Tru1I	TTAA	2 cut(s)	159, 775
Tru9I	TTAA	2 cut(s)	159, 775
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	581
TspDTI	ATGAA	3 cut(s)	269, 547, 632
TspRI	CASTG	1 cut(s)	60
XhoI	CTCGAG	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.