Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009305

Physical Location & Seq

Genomic Coordinates Reverse (-)

18126470 .. 18131582

Gene Structure 5113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G162300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTCGACGACCGCCAGAATTCATCCAGCAGCCTCTACAGTGCTCTCCTCCACCATCAAACACCACCTCCTCCGACCGCCTCCAAACGCTGTCGTATTCAGAACCAATCCCAACTCCGTCAGGCGTCGCGGAACCATAAGAACCCTCACTGTGGCAGCGGCTGCCCCTTTCGAAGTTTGTGCCAAAGCCTCCGTCACTGTCCCCAACAAGCTCGGCGACTGTCCATTTTGTCAAAGGGTGTTGTTGACTCTAGAGGAAAAGAATCTCCCTTATGACCTGAAGTTGGTGGACTTGGCTAACAAGCCAGAGTGGTTCTTAAAGATTAATCCAGAAGGTAAAGTACCTGTGATAAATCTGAATGAGAAATGGGTTGCAGATTCAGATGTTATCACACAAGCTTTGGAAGAAAAGTATCCAGATCCACCTTTGGCAGCCCCCCCTGAGAAGGCTTCAGTTGGGTCTAAGATCTTCTCCACATTTATTGGGTTCCTTAAGAGCAAAGACCCCAAAGATGGAACAGAACAAGCATTGCTAAATGAACTTAGCTCTTTCAATGATTATCTCAAAGAAAATGGTCCTTTCATCAATGGGAAGGAGGTTTCTGCTGTAGATTTTTCACTTGGACCCAAGTTGTATCATCTAGAGATTGCTTTGGGGCATTTTAAAGATTGGTCAGTTCCAGATTCCCTTCCATATGTGAAGTCTTACATGAAGAGTATATTCTCACTGGATTCATTCGTCAAAACTAGTTCCCTGAAAGAAGACGTCATTGCGGGTTGGCGGCCGAAAGTCTTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010731 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016667 GO:0016672 GO:0016740 GO:0016765 GO:0019538 GO:0031967 GO:0031975 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045174 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901564 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 ko01100 map00053 map00480 map01100

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

267

Amino Acids

29.39

Weight (kDa)

8.81

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16710
fragaria_vesca	FvH4_1g28700 FvH4_1g28700 FvH4_1g28700 FvH4_1g28700
malus_domestica	MD09G1264700.v1.1 MD17G1260600.v1.1
prunus_persica	Prupe.3G162300_v2.0.a1 Prupe.3G162300_v2.0.a1
pyrus_communis	pycom09g17830 pycom17g26130
rosa_chinensis	RchiOBHm_Chr3g0493051
rosa_laevigata	RLG00000022732
rosa_multiflora	Rmu_sc0003941.1_g000013
rosa_roxburghii	Rroxscaffold_6G00391890
rosa_rugosa	Rorug03G0258700 Rorug03G0258700
rosa_samantha	Rh3AG307800 Rh3BG343200 Rh3CG340600 Rh3DG343000
rosa_wichuraiana	Rw3G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	768
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	129
AciI	CCGC	6 cut(s)	12, 77, 129, 158, 773, 781
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	782
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	2 cut(s)	299, 435
AcyI	GRCGYC	2 cut(s)	124, 765
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	4 cut(s)	151, 283, 445, 512
AflII	CTTAAG	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	553
AhlI	ACTAGT	1 cut(s)	746
AluBI	AGCT	3 cut(s)	211, 398, 546
AluI	AGCT	3 cut(s)	211, 398, 546
Alw21I	GWGCWC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	1 cut(s)	782
ApeKI	GCWGC	4 cut(s)	29, 155, 161, 431
ApoI	RAATTY	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AseI	ATTAAT	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	575, 623
AsuII	TTCGAA	1 cut(s)	171
AvaII	GGWCC	2 cut(s)	575, 623
BarI	GAAGNNNNNNTAC	2 cut(s)	324, 356
BbsI	GAAGAC	1 cut(s)	768
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	41, 148, 167, 443
BccI	CCATC	2 cut(s)	62, 506
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciVI	GTATCC	1 cut(s)	423
BcuI	ACTAGT	1 cut(s)	746
BfaI	CTAG	3 cut(s)	251, 641, 747
BfmI	CTRYAG	2 cut(s)	36, 606
BfrI	CTTAAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	423
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	6 cut(s)	30, 156, 159, 162, 432, 782
BlsI	GCNGC	6 cut(s)	31, 157, 160, 163, 433, 783
Bme18I	GGWCC	2 cut(s)	575, 623
BmgT120I	GGNCC	2 cut(s)	575, 623
BmiI	GGNNCC	3 cut(s)	133, 488, 625
BpiI	GAAGAC	1 cut(s)	768
Bpu14I	TTCGAA	1 cut(s)	171
BsaHI	GRCGYC	2 cut(s)	124, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 283, 445, 512
Bse1I	ACTGG	1 cut(s)	732
Bse3DI	GCAATG	2 cut(s)	527, 768
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	4 cut(s)	151, 283, 445, 512
BseMI	GCAATG	2 cut(s)	527, 768
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	732
BseRI	GAGGAG	2 cut(s)	37, 59
BseX3I	CGGCCG	1 cut(s)	782
BseXI	GCAGC	4 cut(s)	41, 148, 167, 443
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	3 cut(s)	12, 77, 785
BshFI	GGCC	1 cut(s)	784
BsiEI	CGRYCG	3 cut(s)	12, 77, 785
BsiHKAI	GWGCWC	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	4 cut(s)	151, 283, 445, 512
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	784
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	418, 465
BspACI	CCGC	6 cut(s)	12, 77, 129, 158, 773, 781
BspANI	GGCC	1 cut(s)	784
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	3 cut(s)	133, 488, 625
BspPI	GGATC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	171
BspTI	CTTAAG	1 cut(s)	491
BsrDI	GCAATG	2 cut(s)	527, 768
BsrI	ACTGG	1 cut(s)	732
BssMI	GATC	2 cut(s)	418, 465
BssNI	GRCGYC	2 cut(s)	124, 765
Bst4CI	ACNGT	4 cut(s)	40, 151, 199, 221
Bst6I	CTCTTC	1 cut(s)	707
BstACI	GRCGYC	2 cut(s)	124, 765
BstAFI	CTTAAG	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	171
BstDEI	CTNAG	3 cut(s)	441, 462, 542
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	129
BstKTI	GATC	2 cut(s)	421, 468
BstMBI	GATC	2 cut(s)	418, 465
BstMCI	CGRYCG	3 cut(s)	12, 77, 785
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	36, 606
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	41, 148, 167, 443
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	2 cut(s)	418, 465
BstYI	RGATCY	2 cut(s)	418, 465
BstZI	CGGCCG	1 cut(s)	782
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	784
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	4 cut(s)	45, 147, 195, 725
CaiI	CAGNNNCTG	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	575, 623
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	341
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	1 cut(s)	709
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	3 cut(s)	441, 462, 542
DpnI	GATC	2 cut(s)	420, 467
DpnII	GATC	2 cut(s)	418, 465
DraI	TTTAAA	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	782
EagI	CGGCCG	1 cut(s)	782
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
EclXI	CGGCCG	1 cut(s)	782
Eco47I	GGWCC	2 cut(s)	575, 623
Eco52I	CGGCCG	1 cut(s)	782
Eco57I	CTGAAG	2 cut(s)	299, 435
EcoRI	GAATTC	1 cut(s)	18
FaeI	CATG	1 cut(s)	712
FaiI	YATR	6 cut(s)	137, 273, 694, 696, 710, 719
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	708
FauI	CCCGC	1 cut(s)	766
FauNDI	CATATG	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	30, 156, 159, 162, 432, 782
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	6 cut(s)	30, 156, 159, 162, 432, 782
FspBI	CTAG	3 cut(s)	251, 641, 747
GluI	GCNGC	6 cut(s)	30, 156, 159, 162, 432, 782
HaeIII	GGCC	1 cut(s)	784
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	2 cut(s)	124, 765
Hin1II	CATG	1 cut(s)	712
HincII	GTYRAC	2 cut(s)	6, 246
HindII	GTYRAC	2 cut(s)	6, 246
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	5 cut(s)	247, 262, 377, 683, 731
Hpy166II	GTNNAC	3 cut(s)	6, 246, 289
Hpy188I	TCNGA	4 cut(s)	74, 101, 357, 382
Hpy188III	TCNNGA	5 cut(s)	251, 329, 416, 641, 680
Hpy8I	GTNNAC	3 cut(s)	6, 246, 289
Hpy99I	CGWCG	2 cut(s)	10, 129
HpyAV	CCTTC	4 cut(s)	326, 439, 586, 698
HpyCH4III	ACNGT	4 cut(s)	40, 151, 199, 221
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	441, 462, 542
HpySE526I	ACGT	1 cut(s)	765
Hsp92I	GRCGYC	2 cut(s)	124, 765
Hsp92II	CATG	1 cut(s)	712
Kzo9I	GATC	2 cut(s)	418, 465
Lsp1109I	GCAGC	4 cut(s)	41, 148, 167, 443
MaeI	CTAG	3 cut(s)	251, 641, 747
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	420, 467
MboI	GATC	2 cut(s)	418, 465
MboII	GAAGA	4 cut(s)	416, 460, 724, 773
MflI	RGATCY	2 cut(s)	418, 465
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	9 cut(s)	43, 58, 77, 80, 90, 155, 199, 247, 589
MseI	TTAA	5 cut(s)	317, 324, 492, 663, 799
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	2 cut(s)	418, 465
NlaIII	CATG	1 cut(s)	712
NlaIV	GGNNCC	3 cut(s)	133, 488, 625
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	171
PfeI	GAWTC	4 cut(s)	262, 377, 683, 731
PkrI	GCNGC	6 cut(s)	31, 157, 160, 163, 433, 783
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PshBI	ATTAAT	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	133, 488, 625
PspPI	GGNCC	2 cut(s)	575, 623
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	2 cut(s)	418, 465
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	5 cut(s)	317, 324, 492, 663, 799
SatI	GCNGC	6 cut(s)	30, 156, 159, 162, 432, 782
Sau3AI	GATC	2 cut(s)	418, 465
Sau96I	GGNCC	2 cut(s)	575, 623
SchI	GAGTC	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	45
SfcI	CTRYAG	2 cut(s)	36, 606
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	2 cut(s)	575, 623
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SpeI	ACTAGT	1 cut(s)	746
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	6 cut(s)	12, 77, 129, 158, 773, 781
SspMI	CTAG	3 cut(s)	251, 641, 747
TaaI	ACNGT	4 cut(s)	40, 151, 199, 221
TaiI	ACGT	1 cut(s)	768
TaqI	TCGA	2 cut(s)	5, 171
TasI	AATT	1 cut(s)	18
TauI	GCSGC	2 cut(s)	161, 784
TfiI	GAWTC	4 cut(s)	262, 377, 683, 731
Tru1I	TTAA	5 cut(s)	317, 324, 492, 663, 799
Tru9I	TTAA	5 cut(s)	317, 324, 492, 663, 799
TscAI	CASTG	4 cut(s)	45, 154, 202, 732
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	4 cut(s)	29, 155, 161, 431
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	5 cut(s)	11, 552, 571, 723, 725
TspGWI	ACGGA	2 cut(s)	106, 181
TspRI	CASTG	4 cut(s)	45, 154, 202, 732
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	2 cut(s)	575, 623
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	1 cut(s)	18
XbaI	TCTAGA	2 cut(s)	250, 640
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	251, 641, 747
ZraI	GACGTC	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.