Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009305

Physical Location & Seq

Genomic Coordinates Reverse (-)

24436789 .. 24440104

Gene Structure 3316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTGACCACCGCCAAAATCCATCCGGCAGCCTCCGCTGTACTCTCCTCCACCATCAAACACCACCTCCGGCCGCCTCCCAACGCCGTCGTATTCAGAACCAAACCCAACTCCCTGCGGCGCCGCGGAACCACAAGAACCCTCACGGTGGCAATGGTCGCCCCTCTCGACGTTTGCGCCAAGGCCTCCACCACTGTTCCCAACAAGCTCGGCGACTGTCCCTTTTGTCAAAGGGTGTTGCTGACTCTAGAGGAAAAGCATCTCCCTTATGACCTGAAGTTGGTAGACTTGGGCAACAAGCCAGAATGGTTCTTAAAAATTAACTCGGAAGGTAAAGTTCCTGTGGTCAAACTTGATGAGAAGTGGGTTGCGGATTCAGATATTATTACACAAGCACTGGAAGAAAAGTACCCAGAACCACCTTTAGCAACCCCCCCTGAGAAGGCTTCAGTTGGATCAAAGATCTTCTCTACATTTATCGGTTTCCTAAAGAGCAAAGACCCCAAGGATGGAACTGAACAAGCCTTGCTAAATGAACTTAGCTCTTTCAACGATTATCTCAAAGAAAATGGTCCTTTTATCAATGGGAAAGAGGTTTCTGCTGCTGATTTGTCGCTTGGACCCAAGTTGTATCATCTAGAGATTGCTCTGGGGCATTTCAAAGATTGGTCAATTCCTGATTCCCTTCCATATGTGAAATCTTACATGAAGAGTATATTCTCACTGGATTCATTCGTTAAAACTAGTGCCCTGAAAGAAGATGTCATTGCAGGTTGGCGTCCAAAAGTCTTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010731 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016667 GO:0016672 GO:0016740 GO:0016765 GO:0019538 GO:0031967 GO:0031975 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045174 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901564 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 ko01100 map00053 map00480 map01100

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

266

Amino Acids

29.3

Weight (kDa)

8.94

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16710
fragaria_vesca	FvH4_1g28700 FvH4_1g28700 FvH4_1g28700 FvH4_1g28700
malus_domestica	MD09G1264700.v1.1 MD17G1260600.v1.1
prunus_persica	Prupe.3G162300_v2.0.a1 Prupe.3G162300_v2.0.a1
pyrus_communis	pycom09g17830 pycom17g26130
rosa_chinensis	RchiOBHm_Chr3g0493051
rosa_laevigata	RLG00000022732
rosa_multiflora	Rmu_sc0003941.1_g000013
rosa_roxburghii	Rroxscaffold_6G00391890
rosa_rugosa	Rorug03G0258700 Rorug03G0258700
rosa_samantha	Rh3AG307800 Rh3BG343200 Rh3CG340600 Rh3DG343000
rosa_wichuraiana	Rw3G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	126
AciI	CCGC	7 cut(s)	12, 36, 74, 118, 124, 126, 371
AclWI	GGATC	1 cut(s)	463
AcoI	YGGCCR	1 cut(s)	71
AcuI	CTGAAG	2 cut(s)	296, 432
AcyI	GRCGYC	2 cut(s)	121, 778
AfaI	GTAC	2 cut(s)	42, 410
AfiI	CCNNNNNNNGG	4 cut(s)	148, 280, 442, 509
AgsI	TTSAA	2 cut(s)	550, 661
AhlI	ACTAGT	1 cut(s)	743
AluBI	AGCT	2 cut(s)	208, 543
AluI	AGCT	2 cut(s)	208, 543
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	2 cut(s)	71, 183
ApeKI	GCWGC	2 cut(s)	29, 602
AspLEI	GCGC	2 cut(s)	123, 179
AspS9I	GGNCC	2 cut(s)	572, 620
AvaII	GGWCC	2 cut(s)	572, 620
BaeGI	GKGCMC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	41, 589
BccI	CCATC	3 cut(s)	30, 62, 503
BceAI	ACGGC	1 cut(s)	71
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	3 cut(s)	248, 638, 744
BfoI	RGCGCY	1 cut(s)	124
BfuAI	ACCTGC	1 cut(s)	761
BglII	AGATCT	1 cut(s)	462
BisI	GCNGC	5 cut(s)	30, 74, 119, 124, 603
BlsI	GCNGC	5 cut(s)	31, 75, 120, 125, 604
Bme18I	GGWCC	2 cut(s)	572, 620
BmgT120I	GGNCC	2 cut(s)	572, 620
BmiI	GGNNCC	3 cut(s)	122, 130, 622
BmsI	GCATC	1 cut(s)	268
BsaHI	GRCGYC	2 cut(s)	121, 778
BsaJI	CCNNGG	3 cut(s)	124, 180, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 280, 442, 509
Bse1I	ACTGG	2 cut(s)	402, 729
Bse3DI	GCAATG	2 cut(s)	159, 765
BseDI	CCNNGG	3 cut(s)	124, 180, 504
BseGI	GGATG	2 cut(s)	22, 514
BseLI	CCNNNNNNNGG	4 cut(s)	148, 280, 442, 509
BseMI	GCAATG	2 cut(s)	159, 765
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	402, 729
BseRI	GAGGAG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	751
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	41, 589
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	73, 185
BshNI	GGYRCC	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	26, 70
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	4 cut(s)	148, 280, 442, 509
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	73, 185
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	2 cut(s)	455, 462
BspACI	CCGC	7 cut(s)	12, 36, 74, 118, 124, 126, 371
BspANI	GGCC	2 cut(s)	73, 185
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	122, 130, 622
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	159, 765
BsrI	ACTGG	2 cut(s)	402, 729
BssECI	CCNNGG	3 cut(s)	124, 180, 504
BssMI	GATC	2 cut(s)	455, 462
BssNI	GRCGYC	2 cut(s)	121, 778
BssT1I	CCWWGG	2 cut(s)	180, 504
Bst4CI	ACNGT	3 cut(s)	148, 196, 218
Bst6I	CTCTTC	1 cut(s)	704
BstACI	GRCGYC	2 cut(s)	121, 778
BstDEI	CTNAG	2 cut(s)	438, 539
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	22, 514
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	123, 179
BstKTI	GATC	2 cut(s)	458, 465
BstMBI	GATC	2 cut(s)	455, 462
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 158
BstSLI	GKGCMC	1 cut(s)	751
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	41, 589
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	73, 185
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	22, 514
BtsIMutI	CAGTG	3 cut(s)	192, 395, 722
BveI	ACCTGC	1 cut(s)	761
CfoI	GCGC	2 cut(s)	123, 179
Cfr13I	GGNCC	2 cut(s)	572, 620
Cfr42I	CCGCGG	1 cut(s)	127
CseI	GACGC	1 cut(s)	767
Csp6I	GTAC	2 cut(s)	41, 409
CviAII	CATG	1 cut(s)	706
CviJI	RGCY	8 cut(s)	32, 73, 185, 208, 301, 446, 524, 543
CviKI_1	RGCY	8 cut(s)	32, 73, 185, 208, 301, 446, 524, 543
CviQI	GTAC	2 cut(s)	41, 409
DdeI	CTNAG	2 cut(s)	438, 539
DinI	GGCGCC	1 cut(s)	122
DpnI	GATC	2 cut(s)	457, 464
DpnII	GATC	2 cut(s)	455, 462
EaeI	YGGCCR	1 cut(s)	71
EagI	CGGCCG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	704
EarI	CTCTTC	1 cut(s)	704
EclXI	CGGCCG	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	180, 504
Eco147I	AGGCCT	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	572, 620
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	296, 432
EcoT14I	CCWWGG	2 cut(s)	180, 504
EgeI	GGCGCC	1 cut(s)	122
EheI	GGCGCC	1 cut(s)	122
ErhI	CCWWGG	2 cut(s)	180, 504
FaeI	CATG	1 cut(s)	709
FaiI	YATR	5 cut(s)	270, 691, 693, 707, 716
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	1 cut(s)	705
FauNDI	CATATG	1 cut(s)	691
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	30, 74, 119, 124, 603
FokI	GGATG	2 cut(s)	9, 521
Fsp4HI	GCNGC	5 cut(s)	30, 74, 119, 124, 603
FspBI	CTAG	3 cut(s)	248, 638, 744
GlaI	GCGC	2 cut(s)	122, 178
GluI	GCNGC	5 cut(s)	30, 74, 119, 124, 603
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	73, 185
HapII	CCGG	2 cut(s)	26, 70
HgaI	GACGC	1 cut(s)	767
HhaI	GCGC	2 cut(s)	123, 179
Hin1I	GRCGYC	2 cut(s)	121, 778
Hin1II	CATG	1 cut(s)	709
Hin6I	GCGC	2 cut(s)	121, 177
HinP1I	GCGC	2 cut(s)	121, 177
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	244, 374, 680, 728
HpaII	CCGG	2 cut(s)	26, 70
Hpy166II	GTNNAC	2 cut(s)	6, 286
Hpy188I	TCNGA	3 cut(s)	98, 328, 379
Hpy188III	TCNNGA	4 cut(s)	167, 248, 638, 677
Hpy8I	GTNNAC	2 cut(s)	6, 286
Hpy99I	CGWCG	2 cut(s)	92, 173
HpyAV	CCTTC	3 cut(s)	323, 436, 695
HpyCH4III	ACNGT	3 cut(s)	148, 196, 218
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 158
HpyF3I	CTNAG	2 cut(s)	438, 539
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	2 cut(s)	121, 778
Hsp92II	CATG	1 cut(s)	709
HspAI	GCGC	2 cut(s)	121, 177
KasI	GGCGCC	1 cut(s)	120
KspI	CCGCGG	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	455, 462
Lsp1109I	GCAGC	2 cut(s)	41, 589
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	3 cut(s)	248, 638, 744
MaeII	ACGT	1 cut(s)	171
MalI	GATC	2 cut(s)	457, 464
MboI	GATC	2 cut(s)	455, 462
MboII	GAAGA	4 cut(s)	413, 457, 721, 770
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	2 cut(s)	318, 672
Mly113I	GGCGCC	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	9 cut(s)	43, 58, 77, 87, 152, 174, 196, 244, 586
MseI	TTAA	4 cut(s)	314, 321, 738, 796
MspA1I	CMGCKG	2 cut(s)	38, 126
MspI	CCGG	2 cut(s)	26, 70
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	35, 158
NarI	GGCGCC	1 cut(s)	121
NdeI	CATATG	1 cut(s)	691
NdeII	GATC	2 cut(s)	455, 462
NlaIII	CATG	1 cut(s)	709
NlaIV	GGNNCC	3 cut(s)	122, 130, 622
NmeAIII	GCCGAG	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	374, 680, 728
PkrI	GCNGC	5 cut(s)	31, 75, 120, 125, 604
PleI	GAGTC	1 cut(s)	238
PluTI	GGCGCC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	122, 130, 622
PspPI	GGNCC	2 cut(s)	572, 620
PsuI	RGATCY	1 cut(s)	462
RsaI	GTAC	2 cut(s)	42, 410
RsaNI	GTAC	2 cut(s)	41, 409
SacII	CCGCGG	1 cut(s)	127
SaqAI	TTAA	4 cut(s)	314, 321, 738, 796
SatI	GCNGC	5 cut(s)	30, 74, 119, 124, 603
Sau3AI	GATC	2 cut(s)	455, 462
Sau96I	GGNCC	2 cut(s)	572, 620
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	751
SetI	ASST	9 cut(s)	69, 174, 210, 276, 334, 424, 545, 597, 775
SfaNI	GCATC	1 cut(s)	268
SfoI	GGCGCC	1 cut(s)	122
Sfr303I	CCGCGG	1 cut(s)	127
SgrBI	CCGCGG	1 cut(s)	127
SinI	GGWCC	2 cut(s)	572, 620
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	2 cut(s)	318, 672
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	7 cut(s)	12, 36, 74, 118, 124, 126, 371
SspDI	GGCGCC	1 cut(s)	120
SspMI	CTAG	3 cut(s)	248, 638, 744
StuI	AGGCCT	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	180, 504
TaaI	ACNGT	3 cut(s)	148, 196, 218
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	318, 672
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	3 cut(s)	76, 121, 126
TfiI	GAWTC	3 cut(s)	374, 680, 728
Tru1I	TTAA	4 cut(s)	314, 321, 738, 796
Tru9I	TTAA	4 cut(s)	314, 321, 738, 796
TscAI	CASTG	3 cut(s)	199, 402, 729
TseI	GCWGC	2 cut(s)	29, 602
TspDTI	ATGAA	3 cut(s)	549, 720, 722
TspRI	CASTG	3 cut(s)	199, 402, 729
VpaK11BI	GGWCC	2 cut(s)	572, 620
XbaI	TCTAGA	2 cut(s)	247, 637
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	3 cut(s)	248, 638, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.