Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009305

Physical Location & Seq

Genomic Coordinates Forward (+)

38538025 .. 38543015

Gene Structure 4991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG343000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCGACGACGACGGTACGAATTCATCCAACAGCCTCTGCTCTGTCGTCCACCATCAAACACCACCTCCTCGTCCGACCATCTCACCGCCACGTCGTCTTCAGAAACAACGACTCCTTCTCTCGTCGTGGAATGGTCTCTATGGCTGCCACCCCTCTCCCAGTTTGCGTCAAACCCTCCGTCACTGTCCCCAACAAGCTCGGCGACTGTCCCTTTTGCCAAAGGGTGTTGCTGACTCTTGAGGAGAAGCATCTTCCTTACGAGCTCAAGTTGGTGGACTTGGCCCACAAGCCAGAATGGTTCTTAAAAATTAACCCACAAGGTAAAGTTCCTGTGGTAAAACTTGATGACAAGTGGATTGCAGATTCAGACATTATCACACAAATACTGGAAGACAAGTACCCAGAACCGCCTTTGAGAACCCCCCCTGAGAAGGCTTCAGTTGGGTCAAAGATCTTCTCTACATTTATTGGTTTCCTTAAGAGCAAAGACCCCAAAGATGGAACAGAGCAAGCATTAATCAGTGAACTTAGCACTTTCAATGATTACCTCAAAGATAATGGCCCTTTTGTCAATGGGGAGAAGGTTTCTTCCGTAGACCTGTCACTTGCGCCCAAGTTGTATCATATGGAGATTGCTTTGGGGCATTATAAAAGTTGGTCGGTTCCAGATTCCCTTCCATATGTGAAGTCTTACTTAAAGAGTATCTTCTCACTGGATTCATTTACTAAAACGAGTGCCCTGAAAGAAGATGTCATTGCCGGTTGGCGTTCCAAAGTCTTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010731 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016667 GO:0016672 GO:0016740 GO:0016765 GO:0019538 GO:0031967 GO:0031975 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045174 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901564 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 ko01100 map00053 map00480 map01100

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

262

Amino Acids

29.31

Weight (kDa)

9.07

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLIC-like_N	PF22441	64 - 134	8.8e-10	CLIC-like N-terminal domain
GST_N_3	PF13417	69 - 138	2.6e-20	Glutathione S-transferase, N-terminal domain
GST_N	PF02798	69 - 128	2.8e-09	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	70 - 132	3e-20	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16710
fragaria_vesca	FvH4_1g28700 FvH4_1g28700 FvH4_1g28700 FvH4_1g28700
malus_domestica	MD09G1264700.v1.1 MD17G1260600.v1.1
prunus_persica	Prupe.3G162300_v2.0.a1 Prupe.3G162300_v2.0.a1
pyrus_communis	pycom09g17830 pycom17g26130
rosa_chinensis	RchiOBHm_Chr3g0493051
rosa_laevigata	RLG00000022732
rosa_multiflora	Rmu_sc0003941.1_g000013
rosa_roxburghii	Rroxscaffold_6G00391890
rosa_rugosa	Rorug03G0258700 Rorug03G0258700
rosa_samantha	Rh3AG307800 Rh3BG343200 Rh3CG340600 Rh3DG343000
rosa_wichuraiana	Rw3G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
AccI	GTMKAC	2 cut(s)	5, 597
AciI	CCGC	2 cut(s)	88, 410
AcsI	RAATTY	1 cut(s)	21
AcuI	CTGAAG	2 cut(s)	85, 423
AfaI	GTAC	2 cut(s)	18, 401
AfiI	CCNNNNNNNGG	2 cut(s)	433, 500
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	1 cut(s)	541
AjiI	CACGTC	1 cut(s)	94
AluBI	AGCT	2 cut(s)	199, 265
AluI	AGCT	2 cut(s)	199, 265
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	282, 562
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	21
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AseI	ATTAAT	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	2 cut(s)	283, 563
AsuHPI	GGTGA	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	742
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	2 cut(s)	91, 399
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	3 cut(s)	62, 88, 494
BcoDI	GTCTC	1 cut(s)	142
BfrI	CTTAAG	1 cut(s)	479
BglII	AGATCT	1 cut(s)	453
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	283, 563
BmiI	GGNNCC	1 cut(s)	666
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	91, 399
BpuEI	CTTGAG	2 cut(s)	251, 260
BsaI	GGTCTC	1 cut(s)	142
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 500
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	3 cut(s)	161, 393, 720
Bse3DI	GCAATG	1 cut(s)	756
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	433, 500
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	3 cut(s)	161, 393, 720
BseRI	GAGGAG	2 cut(s)	59, 257
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	2 cut(s)	284, 564
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	762
BslFI	GGGAC	2 cut(s)	173, 195
BslI	CCNNNNNNNGG	2 cut(s)	433, 500
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	173, 195
BsnI	GGCC	2 cut(s)	284, 564
Bso31I	GGTCTC	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	267, 742
Bsp143I	GATC	1 cut(s)	453
BspACI	CCGC	2 cut(s)	88, 410
BspANI	GGCC	2 cut(s)	284, 564
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	666
BspTI	CTTAAG	1 cut(s)	479
BspTNI	GGTCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	3 cut(s)	161, 393, 720
BssAI	RCCGGY	1 cut(s)	761
BssMI	GATC	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	16, 187, 209
BstAFI	CTTAAG	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	429, 530
BstF5I	GGATG	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	1 cut(s)	456
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	742
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	2 cut(s)	91, 399
BstX2I	RGATCY	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	284, 564
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	183, 529, 713
Cac8I	GCNNGC	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	613
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	2 cut(s)	283, 563
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	17, 400
CviJI	RGCY	8 cut(s)	35, 146, 199, 265, 284, 292, 437, 564
CviKI_1	RGCY	8 cut(s)	35, 146, 199, 265, 284, 292, 437, 564
CviQI	GTAC	2 cut(s)	17, 400
DdeI	CTNAG	2 cut(s)	429, 530
DpnI	GATC	1 cut(s)	455
DpnII	GATC	1 cut(s)	453
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	2 cut(s)	85, 423
EcoICRI	GAGCTC	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	267
FaiI	YATR	6 cut(s)	143, 627, 629, 651, 682, 684
FalI	AAGNNNNNCTT	4 cut(s)	680, 712, 692, 724
FaqI	GGGAC	2 cut(s)	173, 195
FauNDI	CATATG	2 cut(s)	627, 682
FblI	GTMKAC	2 cut(s)	5, 597
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	12
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	147
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	284, 564
HapII	CCGG	1 cut(s)	762
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	613
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	113, 235, 365, 671, 719
HpaII	CCGG	1 cut(s)	762
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	5 cut(s)	6, 51, 277, 527, 598
Hpy188I	TCNGA	3 cut(s)	77, 104, 370
Hpy188III	TCNNGA	2 cut(s)	239, 668
Hpy8I	GTNNAC	5 cut(s)	6, 51, 277, 527, 598
Hpy99I	CGWCG	5 cut(s)	10, 13, 16, 98, 129
HpyAV	CCTTC	4 cut(s)	127, 427, 577, 686
HpyCH4III	ACNGT	3 cut(s)	16, 187, 209
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	429, 530
HpySE526I	ACGT	1 cut(s)	93
HspAI	GCGC	1 cut(s)	611
Kzo9I	GATC	1 cut(s)	453
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	181, 603
MalI	GATC	1 cut(s)	455
MboI	GATC	1 cut(s)	453
MboII	GAAGA	7 cut(s)	91, 245, 404, 448, 582, 700, 761
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	267, 742
MluCI	AATT	2 cut(s)	21, 309
MlyI	GAGTC	2 cut(s)	107, 229
MmeI	TCCRAC	2 cut(s)	53, 100
MnlI	CCTC	7 cut(s)	46, 77, 80, 165, 187, 235, 560
MseI	TTAA	6 cut(s)	305, 312, 480, 518, 698, 787
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	1 cut(s)	762
NdeI	CATATG	2 cut(s)	627, 682
NdeII	GATC	1 cut(s)	453
NlaIV	GGNNCC	1 cut(s)	666
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	181, 603
PfeI	GAWTC	3 cut(s)	365, 671, 719
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	107, 229
PpsI	GAGTC	2 cut(s)	107, 229
PshBI	ATTAAT	1 cut(s)	518
PsiI	TTATAA	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	2 cut(s)	283, 563
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	2 cut(s)	18, 401
RsaNI	GTAC	2 cut(s)	17, 400
SacI	GAGCTC	1 cut(s)	267
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	6 cut(s)	305, 312, 480, 518, 698, 787
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	453
Sau96I	GGNCC	2 cut(s)	283, 563
SchI	GAGTC	2 cut(s)	107, 229
SduI	GDGCHC	2 cut(s)	267, 742
SetI	ASST	8 cut(s)	69, 96, 201, 267, 325, 552, 588, 603
SfaNI	GCATC	1 cut(s)	259
SmlI	CTYRAG	3 cut(s)	239, 266, 479
SmoI	CTYRAG	3 cut(s)	239, 266, 479
Sse9I	AATT	2 cut(s)	21, 309
SsiI	CCGC	2 cut(s)	88, 410
SstI	GAGCTC	1 cut(s)	267
TaaI	ACNGT	3 cut(s)	16, 187, 209
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	21, 309
TfiI	GAWTC	3 cut(s)	365, 671, 719
Tru1I	TTAA	6 cut(s)	305, 312, 480, 518, 698, 787
Tru9I	TTAA	6 cut(s)	305, 312, 480, 518, 698, 787
TscAI	CASTG	3 cut(s)	190, 529, 720
TseFI	GTSAC	2 cut(s)	181, 603
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	2 cut(s)	181, 603
TspDTI	ATGAA	2 cut(s)	14, 711
TspGWI	ACGGA	2 cut(s)	169, 583
TspRI	CASTG	3 cut(s)	190, 529, 720
Vha464I	CTTAAG	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	518
XapI	RAATTY	1 cut(s)	21
XmiI	GTMKAC	2 cut(s)	5, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.