Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009305

Physical Location & Seq

Genomic Coordinates Forward (+)

20994984 .. 20999823

Gene Structure 4840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28700.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTCGACGACCACCGCCGCACGCATTCATCCAACAGCCGCTGCTCTGTCCTCCACCATCAAACATCACCTCCTCCTCCGACCATCTCACCGACGACATGTCGTCTTCCGAAACAACACATCCTTCTCTCGTCGCCCAATGCTCACAATGGCCTCCGCACCCACCCCTCTCCAAGTTTGCGTCAAGTCCTCCATCACTGTCCCCAACAAGCTCGGCGACTGTCCCTTTTGCCAAAGGGTGTTGCTGACTCTTGAGGAAAAGCATCTCCCTTACGAACTCAAGTTGGTGGACTTGGCCAACAAGCCAGACTGGTTCTTGAAAATTAACCCAGATGGTAAGGTTCCTGTGGTCAACCTTGATGACAAGTGGATTGCAGATTCAGATATTATCACTCAAATACTGGAAGACAAGTACCCTGAGCCGCCTTTGACAACCCCCCCTGACAAGGCTTCAGTTGGGTCAAAGATCTTCTCTACGTTTATTGGTTTCCTTAAGAGCAAAGACCCCAAAGATGGAACAGAGCAAGCATTAATCAATGAACTTAGCACTTTCAATGATTACCTCAAATTAAATATGTTGAATTCTTTTCAGGGGCCTTTTGTGAATGGGGACCAGGTTTCTTCCGTTGACCTGTCACTTGCTCCCAAGTTGTATCATATGGAGATTGCTTTGGGGCATTATAAAAGTTGGTCGGTTCCAGATTCCCTTCCATTTCTGAAGTCTTACATAAAGAGTATCTTTTCACGGGATTCATTTACGAAAACTAGTGCCCTGAAAGAGGATGTTATTGCCGGTTGGCGGCCCAAAGTCTTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010731 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016667 GO:0016672 GO:0016740 GO:0016765 GO:0019538 GO:0031967 GO:0031975 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045174 GO:0050896 GO:0051186 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901564 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 ko01100 map00053 map00480 map01100

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

273

Amino Acids

30.43

Weight (kDa)

9.11

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	105 - 173	2.4e-18	Glutathione S-transferase, N-terminal domain
CLIC-like_N	PF22441	105 - 169	3.8e-06	CLIC-like N-terminal domain
GST_N_2	PF13409	106 - 167	7.7e-18	Glutathione S-transferase, N-terminal domain
GST_N	PF02798	106 - 163	8.6e-09	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16710
fragaria_vesca	FvH4_1g28700 FvH4_1g28700 FvH4_1g28700 FvH4_1g28700
malus_domestica	MD09G1264700.v1.1 MD17G1260600.v1.1
prunus_persica	Prupe.3G162300_v2.0.a1 Prupe.3G162300_v2.0.a1
pyrus_communis	pycom09g17830 pycom17g26130
rosa_chinensis	RchiOBHm_Chr3g0493051
rosa_laevigata	RLG00000022732
rosa_multiflora	Rmu_sc0003941.1_g000013
rosa_roxburghii	Rroxscaffold_6G00391890
rosa_rugosa	Rorug03G0258700 Rorug03G0258700
rosa_samantha	Rh3AG307800 Rh3BG343200 Rh3CG340600 Rh3DG343000
rosa_wichuraiana	Rw3G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	6 cut(s)	15, 18, 39, 156, 422, 799
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	2 cut(s)	435, 737
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	4 cut(s)	445, 512, 778, 798
AflII	CTTAAG	1 cut(s)	491
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	3 cut(s)	319, 553, 580
AhdI	GACNNNNNGTC	2 cut(s)	98, 101
AhlI	ACTAGT	1 cut(s)	764
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	4 cut(s)	150, 294, 593, 800
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	580
AseI	ATTAAT	1 cut(s)	530
AspS9I	GGNCC	3 cut(s)	593, 610, 801
AsuHPI	GGTGA	2 cut(s)	59, 80
AvaII	GGWCC	1 cut(s)	610
BaeGI	GKGCMC	1 cut(s)	772
BalI	TGGCCA	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	97, 411
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	5 cut(s)	65, 91, 200, 326, 506
BciT130I	CCWGG	1 cut(s)	614
BcuI	ACTAGT	1 cut(s)	764
BfaI	CTAG	1 cut(s)	765
BfrI	CTTAAG	1 cut(s)	491
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	5 cut(s)	18, 39, 42, 422, 800
BlsI	GCNGC	5 cut(s)	19, 40, 43, 423, 801
Bme1390I	CCNGG	1 cut(s)	614
Bme18I	GGWCC	1 cut(s)	610
BmeRI	GACNNNNNGTC	2 cut(s)	98, 101
BmgT120I	GGNCC	3 cut(s)	593, 610, 801
BmiI	GGNNCC	4 cut(s)	342, 594, 611, 696
BmrFI	CCNGG	1 cut(s)	614
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	2 cut(s)	97, 411
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	2 cut(s)	263, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	4 cut(s)	445, 512, 778, 798
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	2 cut(s)	314, 405
BseBI	CCWGG	1 cut(s)	614
BseGI	GGATG	3 cut(s)	28, 119, 787
BseLI	CCNNNNNNNGG	4 cut(s)	445, 512, 778, 798
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	314, 405
BseRI	GAGGAG	2 cut(s)	62, 65
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	4 cut(s)	152, 296, 595, 802
BsiSI	CCGG	1 cut(s)	792
BslFI	GGGAC	3 cut(s)	185, 207, 623
BslI	CCNNNNNNNGG	4 cut(s)	445, 512, 778, 798
BsmFI	GGGAC	3 cut(s)	185, 207, 623
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	4 cut(s)	152, 296, 595, 802
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp143I	GATC	1 cut(s)	465
BspACI	CCGC	6 cut(s)	15, 18, 39, 156, 422, 799
BspANI	GGCC	4 cut(s)	152, 296, 595, 802
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	4 cut(s)	342, 594, 611, 696
BspTI	CTTAAG	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	791
BsrI	ACTGG	2 cut(s)	314, 405
BssAI	RCCGGY	1 cut(s)	791
BssMI	GATC	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	199, 221
BstAFI	CTTAAG	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	22, 525
BstDEI	CTNAG	2 cut(s)	417, 542
BstENI	CCTNNNNNAGG	1 cut(s)	776
BstF5I	GGATG	3 cut(s)	28, 119, 787
BstKTI	GATC	1 cut(s)	468
BstMBI	GATC	1 cut(s)	465
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	2 cut(s)	97, 411
BstX2I	RGATCY	1 cut(s)	465
BstXI	CCANNNNNNTGG	1 cut(s)	811
BstYI	RGATCY	1 cut(s)	465
BsuRI	GGCC	4 cut(s)	152, 296, 595, 802
BtsCI	GGATG	3 cut(s)	28, 119, 787
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	22, 525
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	3 cut(s)	593, 610, 801
CseI	GACGC	1 cut(s)	169
CsiI	ACCWGGT	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	9 cut(s)	38, 152, 211, 296, 304, 421, 449, 595, 802
CviKI_1	RGCY	9 cut(s)	38, 152, 211, 296, 304, 421, 449, 595, 802
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	417, 542
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
DriI	GACNNNNNGTC	2 cut(s)	98, 101
EaeI	YGGCCR	1 cut(s)	294
Eam1105I	GACNNNNNGTC	2 cut(s)	98, 101
Eco47I	GGWCC	1 cut(s)	610
Eco57I	CTGAAG	2 cut(s)	435, 737
EcoNI	CCTNNNNNAGG	1 cut(s)	776
EcoO109I	RGGNCCY	1 cut(s)	593
EcoRI	GAATTC	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	612
FaeI	CATG	1 cut(s)	101
FaiI	YATR	6 cut(s)	99, 575, 657, 659, 681, 728
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	3 cut(s)	185, 207, 623
FatI	CATG	1 cut(s)	97
FauNDI	CATATG	1 cut(s)	657
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	18, 39, 42, 422, 800
FokI	GGATG	3 cut(s)	15, 106, 794
Fsp4HI	GCNGC	5 cut(s)	18, 39, 42, 422, 800
FspBI	CTAG	1 cut(s)	765
GluI	GCNGC	5 cut(s)	18, 39, 42, 422, 800
HaeIII	GGCC	4 cut(s)	152, 296, 595, 802
HapII	CCGG	1 cut(s)	792
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	101
HincII	GTYRAC	3 cut(s)	6, 352, 628
HindII	GTYRAC	3 cut(s)	6, 352, 628
HinfI	GANTC	4 cut(s)	247, 377, 701, 749
HpaII	CCGG	1 cut(s)	792
HphI	GGTGA	2 cut(s)	59, 80
Hpy166II	GTNNAC	4 cut(s)	6, 289, 352, 628
Hpy188I	TCNGA	4 cut(s)	80, 110, 382, 717
Hpy188III	TCNNGA	3 cut(s)	251, 316, 698
Hpy8I	GTNNAC	4 cut(s)	6, 289, 352, 628
Hpy99I	CGWCG	3 cut(s)	10, 96, 135
HpyAV	CCTTC	2 cut(s)	133, 716
HpyCH4III	ACNGT	2 cut(s)	199, 221
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	1 cut(s)	374
HpyF3I	CTNAG	2 cut(s)	417, 542
HpySE526I	ACGT	1 cut(s)	476
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	646
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	271
MabI	ACCWGGT	1 cut(s)	612
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	633
MalI	GATC	1 cut(s)	467
MboI	GATC	1 cut(s)	465
MboII	GAAGA	4 cut(s)	97, 416, 460, 612
MflI	RGATCY	1 cut(s)	465
MhlI	GDGCHC	1 cut(s)	772
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	3 cut(s)	321, 566, 580
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	2 cut(s)	56, 103
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	5 cut(s)	324, 492, 530, 569, 817
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	41
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	1 cut(s)	792
MspR9I	CCNGG	1 cut(s)	614
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	614
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	1 cut(s)	465
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	4 cut(s)	342, 594, 611, 696
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	633
NspI	RCATGY	1 cut(s)	101
PciI	ACATGT	1 cut(s)	97
PctI	GAATGC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	377, 701, 749
PkrI	GCNGC	5 cut(s)	19, 40, 43, 423, 801
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PscI	ACATGT	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	530
PsiI	TTATAA	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	4 cut(s)	342, 594, 611, 696
PspPI	GGNCC	3 cut(s)	593, 610, 801
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	465
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	5 cut(s)	324, 492, 530, 569, 817
SatI	GCNGC	5 cut(s)	18, 39, 42, 422, 800
Sau3AI	GATC	1 cut(s)	465
Sau96I	GGNCC	3 cut(s)	593, 610, 801
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	772
SetI	ASST	8 cut(s)	72, 213, 342, 357, 479, 564, 618, 633
SexAI	ACCWGGT	1 cut(s)	612
SfaNI	GCATC	1 cut(s)	271
SinI	GGWCC	1 cut(s)	610
SmlI	CTYRAG	3 cut(s)	251, 278, 491
SmoI	CTYRAG	3 cut(s)	251, 278, 491
SpeI	ACTAGT	1 cut(s)	764
Sse9I	AATT	3 cut(s)	321, 566, 580
SsiI	CCGC	6 cut(s)	15, 18, 39, 156, 422, 799
SspMI	CTAG	1 cut(s)	765
StyD4I	CCNGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	199, 221
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	321, 566, 580
TauI	GCSGC	4 cut(s)	20, 41, 424, 802
TfiI	GAWTC	3 cut(s)	377, 701, 749
Tru1I	TTAA	5 cut(s)	324, 492, 530, 569, 817
Tru9I	TTAA	5 cut(s)	324, 492, 530, 569, 817
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	633
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	633
TspDTI	ATGAA	3 cut(s)	17, 552, 741
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	610
VspI	ATTAAT	1 cut(s)	530
XagI	CCTNNNNNAGG	1 cut(s)	776
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.