Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016530

Physical Location & Seq

Genomic Coordinates Reverse (-)

5532846 .. 5535295

Gene Structure 2450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAGTTTCCAAGATCTCGAAGCTGGTACTCGATCTCCGGCGCCGAATCGTTTTACCGGTGGGAGACAACAGAGACCTTCGTCTCGTGGGGATCCATCTCAGGAGGTCGCCGCCGGGATTTTCAGGATCAGCACGGCTGTCAATTCCTTCTTCCGCCTCGTTAATTCGATCGGAACACCTAAAGATACTCTTGAATTACGAGATAAGCTGCAAAAGACAAGGTTACAGATATCCGAATTGGTGAAGAATACTTCAGCTAAACTTAAGGAAGCTAGCGAAGCCGACCTTCATGGATCAGCTAGTCAAATTAAGAAGATAGCTGATGCTAAACTGGCAAAAGATTTCCAATCAGTTCTCAAAGAGTTTCAGAAAGCTCAGAGACTTGCAGCTGAAAGAGAAATAACATATACTCCTGTGGTCACAAAAGAAATACCTACCAGTTATAATGCACCTGAACTGGATACTGAATCTTTAAGGATCTCCCAGCAGCAAGCTCTTCTTCTACAATCAAGAAGGCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAATGAAGCAATTATTGAGGAAAGAGAGCAAGGGATTCGAGAAATTGAAGACCAGATTCGTGATGTGAATGGCATGTTCAAAGATCTAGCTCTTATGGTGAACCATCAAGGAAATATTGTCGATGACATCAGCTCTAACCTTGACAACTCACATGCTGCAACTACACAAGCCACTGTTCAACTCAGAAAAGCAGCTAAAACTCAAAGATCAAACTCCTCTTTGACATGCCTACTTATTCTCATTTTTGGGATTGTTCTACTCATTGTCATCATCGTTGTCTTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

279

Amino Acids

31.06

Weight (kDa)

6.87

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	33 - 163	1.5e-30	Syntaxin-like protein
SNARE	PF05739	223 - 274	5.5e-15	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16830
fragaria_vesca	FvH4_7g34071
malus_domestica	MD01G1237000.v1.1 MD07G1309600.v1.1
prunus_persica	Prupe.2G327300_v2.0.a1
pyrus_communis	pycom01g24480 pycom07g28160
rosa_chinensis	RchiOBHm_Chr1g0384351
rosa_laevigata	RLG00000026046
rosa_multiflora	Rmu_sc0016737.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276750
rosa_rugosa	Rorug01G0447000
rosa_samantha	Rh1CG443100
rosa_wichuraiana	Rw1G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	40
AciI	CCGC	2 cut(s)	111, 154
AclWI	GGATC	5 cut(s)	86, 99, 134, 301, 485
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	28
AflII	CTTAAG	1 cut(s)	263
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	5 cut(s)	194, 553, 599, 631, 731
Alw26I	GTCTC	4 cut(s)	58, 67, 87, 373
AlwI	GGATC	5 cut(s)	86, 99, 134, 301, 485
ApeKI	GCWGC	5 cut(s)	208, 386, 487, 707, 743
AsiGI	ACCGGT	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	253, 661
AsuNHI	GCTAGC	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	5 cut(s)	195, 398, 499, 694, 755
BccI	CCATC	2 cut(s)	103, 663
BceAI	ACGGC	1 cut(s)	150
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciVI	GTATCC	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	4 cut(s)	58, 67, 87, 373
BfaI	CTAG	3 cut(s)	273, 300, 638
BfoI	RGCGCY	1 cut(s)	44
BfrI	CTTAAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	454
BglII	AGATCT	2 cut(s)	13, 634
BisI	GCNGC	6 cut(s)	111, 209, 387, 488, 708, 744
BlsI	GCNGC	6 cut(s)	112, 210, 388, 489, 709, 745
Bme1390I	CCNGG	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	42, 93
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	313
BmtI	GCTAGC	1 cut(s)	276
BoxI	GACNNNNGTC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	606
BpuMI	CCSGG	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 394, 424
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	3 cut(s)	336, 438, 462
BseMII	CTCAG	3 cut(s)	113, 389, 748
BseNI	ACTGG	3 cut(s)	336, 438, 462
BseRI	GAGGAG	1 cut(s)	757
BseXI	GCAGC	5 cut(s)	195, 398, 499, 694, 755
BseYI	CCCAGC	1 cut(s)	483
Bsh1285I	CGRYCG	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	40
BshTI	ACCGGT	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	38, 57, 114
BsmAI	GTCTC	4 cut(s)	58, 67, 87, 373
BsmBI	CGTCTC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	67
Bsp143I	GATC	9 cut(s)	13, 32, 91, 126, 168, 293, 477, 634, 758
BspACI	CCGC	2 cut(s)	111, 154
BspCNI	CTCAG	3 cut(s)	112, 388, 747
BspLI	GGNNCC	2 cut(s)	42, 93
BspOI	GCTAGC	1 cut(s)	276
BspPI	GGATC	5 cut(s)	86, 99, 134, 301, 485
BspQI	GCTCTTC	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	40
BspTI	CTTAAG	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	3 cut(s)	336, 438, 462
BssAI	RCCGGY	1 cut(s)	56
BssMI	GATC	9 cut(s)	13, 32, 91, 126, 168, 293, 477, 634, 758
BssNI	GRCGYC	1 cut(s)	41
BssSI	CACGAG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	727
Bst6I	CTCTTC	1 cut(s)	501
BstACI	GRCGYC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	274, 492
BstDEI	CTNAG	3 cut(s)	99, 375, 734
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	9 cut(s)	16, 35, 94, 129, 171, 296, 480, 637, 761
BstMAI	GTCTC	4 cut(s)	58, 67, 87, 373
BstMBI	GATC	9 cut(s)	13, 32, 91, 126, 168, 293, 477, 634, 758
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 332
BstNSI	RCATGY	3 cut(s)	628, 707, 780
BstPAI	GACNNNNGTC	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	113
BstV1I	GCAGC	5 cut(s)	195, 398, 499, 694, 755
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	4 cut(s)	13, 91, 477, 634
BstYI	RGATCY	4 cut(s)	13, 91, 477, 634
BsuI	GTATCC	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	723
Cac8I	GCNNGC	2 cut(s)	274, 492
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	27
CspAI	ACCGGT	1 cut(s)	56
CviAII	CATG	4 cut(s)	290, 625, 704, 777
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	3 cut(s)	99, 375, 734
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	9 cut(s)	15, 34, 93, 128, 170, 295, 479, 636, 760
DpnII	GATC	9 cut(s)	13, 32, 91, 126, 168, 293, 477, 634, 758
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
EciI	GGCGGA	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	237
EcoRV	GATATC	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	4 cut(s)	293, 628, 707, 780
FaiI	YATR	8 cut(s)	291, 406, 408, 444, 626, 647, 705, 778
FalI	AAGNNNNNCTT	6 cut(s)	174, 206, 270, 302, 483, 515
FatI	CATG	4 cut(s)	289, 624, 703, 776
Fnu4HI	GCNGC	6 cut(s)	111, 209, 387, 488, 708, 744
Fsp4HI	GCNGC	6 cut(s)	111, 209, 387, 488, 708, 744
FspBI	CTAG	3 cut(s)	273, 300, 638
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	6 cut(s)	111, 209, 387, 488, 708, 744
GsaI	CCCAGC	1 cut(s)	487
HaeII	RGCGCY	1 cut(s)	44
HapII	CCGG	3 cut(s)	38, 57, 114
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	293, 628, 707, 780
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	4 cut(s)	46, 467, 586, 607
HpaII	CCGG	3 cut(s)	38, 57, 114
HphI	GGTGA	2 cut(s)	253, 661
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	5 cut(s)	173, 235, 369, 378, 737
Hpy188III	TCNNGA	7 cut(s)	17, 101, 124, 191, 510, 590, 611
Hpy8I	GTNNAC	1 cut(s)	652
HpyAV	CCTTC	4 cut(s)	87, 157, 296, 507
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4V	TGCA	4 cut(s)	211, 386, 449, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 332
HpyF3I	CTNAG	3 cut(s)	99, 375, 734
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	293, 628, 707, 780
HspAI	GCGC	1 cut(s)	41
KasI	GGCGCC	1 cut(s)	40
Kzo9I	GATC	9 cut(s)	13, 32, 91, 126, 168, 293, 477, 634, 758
LguI	GCTCTTC	1 cut(s)	501
Lsp1109I	GCAGC	5 cut(s)	195, 398, 499, 694, 755
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	3 cut(s)	273, 300, 638
MaeIII	GTNAC	2 cut(s)	222, 418
MalI	GATC	9 cut(s)	15, 34, 93, 128, 170, 295, 479, 636, 760
MboI	GATC	9 cut(s)	13, 32, 91, 126, 168, 293, 477, 634, 758
MboII	GAAGA	6 cut(s)	142, 256, 325, 488, 491, 611
MflI	RGATCY	4 cut(s)	13, 91, 477, 634
MluCI	AATT	7 cut(s)	142, 163, 194, 236, 306, 561, 594
Mly113I	GGCGCC	1 cut(s)	41
MnlI	CCTC	4 cut(s)	97, 167, 562, 778
MseI	TTAA	4 cut(s)	162, 264, 309, 473
MspA1I	CMGCKG	1 cut(s)	389
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	3 cut(s)	38, 57, 114
MspR9I	CCNGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	278, 332
NarI	GGCGCC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	9 cut(s)	13, 32, 91, 126, 168, 293, 477, 634, 758
NheI	GCTAGC	1 cut(s)	272
NlaIII	CATG	4 cut(s)	293, 628, 707, 780
NlaIV	GGNNCC	2 cut(s)	42, 93
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	3 cut(s)	628, 707, 780
PciSI	GCTCTTC	1 cut(s)	501
PfeI	GAWTC	4 cut(s)	46, 467, 586, 607
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	6 cut(s)	112, 210, 388, 489, 709, 745
Ple19I	CGATCG	1 cut(s)	171
PluTI	GGCGCC	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	42, 93
PsuI	RGATCY	4 cut(s)	13, 91, 477, 634
PvuI	CGATCG	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	4 cut(s)	162, 264, 309, 473
SatI	GCNGC	6 cut(s)	111, 209, 387, 488, 708, 744
Sau3AI	GATC	9 cut(s)	13, 32, 91, 126, 168, 293, 477, 634, 758
ScrFI	CCNGG	1 cut(s)	115
SfaNI	GCATC	1 cut(s)	313
SfoI	GGCGCC	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	7 cut(s)	142, 163, 194, 236, 306, 561, 594
SsiI	CCGC	2 cut(s)	111, 154
SspDI	GGCGCC	1 cut(s)	40
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	3 cut(s)	273, 300, 638
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	727
TaqI	TCGA	5 cut(s)	18, 31, 167, 589, 672
TasI	AATT	7 cut(s)	142, 163, 194, 236, 306, 561, 594
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	4 cut(s)	46, 467, 586, 607
Tru1I	TTAA	4 cut(s)	162, 264, 309, 473
Tru9I	TTAA	4 cut(s)	162, 264, 309, 473
TscAI	CASTG	1 cut(s)	730
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	5 cut(s)	208, 386, 487, 707, 743
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	278, 570
TspRI	CASTG	1 cut(s)	730
Vha464I	CTTAAG	1 cut(s)	263
XceI	RCATGY	3 cut(s)	628, 707, 780
XspI	CTAG	3 cut(s)	273, 300, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.